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{"sheet":"Sheet1","index":0,"n_rows":53690,"n_cols":23,"rows_kept":2250,"cut":true,"bounds":{"rows_first":1000,"rows_last":250,"rows_between":1000,"halvings":1}}
["GeneID","W-25D-2","W-25D-4","W-35D-3","W-35D-5","E-Value_Ath","Blast_Ath","Description_Ath","E-Value_Ani","Blast_Ani","Description_Ani","E-Value_Bsu","Blast_Bsu","Description_Bsu","E-Value_Cre","Blast_Cre","Description_Cre","E-Value_Sce","Blast_Sce","Description_Sce","E-Value_Ppp","Blast_Ppp","Description_Ppp"]
["TRINITY_DN51648_c0_g1_i1@@W-35D-3@@KO",0.100537020374372,0,0.42401068400412206,0,2e-25,"AT5G63080","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \\\\ 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","","","","","","",5e-13,"chlredraft_120259","hypothetical protein","","","","","",""]
["Contig10675",19.418111231694194,10.333648287586554,18.563490862232673,12.881355501408427,3e-40,"ABCG14","ATP-binding cassette 14 \\\\ ATP-binding cassette 14 (ABCG14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 394116 Blast hits to 359785 proteins in 4146 species: Archae - 7090; Bacteria - 311308; Metazoa - 8766; Fungi - 6614; Plants - 5656; Viruses - 7; Other Eukaryotes - 54675 (source: NCBI BLink).",8e-33,"AN5194.2","hypothetical protein",2e-11,"ytre","ABC transporter ATP-binding protein",2E-41,"chlredraft_180799","hypothetical protein",3e-36,"Z74817","Putative ABC transporter",4e-38,"ppabcg8","ATP-binding cassette transporter, subfamily G, member 8, group WBC protein PpABCG8"]
["TRINITY_DN1449_c0_g1_i1@@W-25D-2@@KO",0.4068681294023881,0,0,0,2e-15,"AT5G06530","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G52310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2E-14,"AN8928.2","similar to T30566 ATP-binding cassette multidrug transport protein - Emericella nidulans",3e-12,"yfic","ABC transporter ATP-binding protein",2E-14,"chlredraft_180799","hypothetical protein",1e-16,"PDR12","Plasma membrane ATP-binding cassette (ABC) transporter, weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity",1e-15,"ppabcg5","ATP-binding cassette transporter, subfamily G, member 5, group WBC protein PpABCG5"]
["Contig5631",2.640510586676279,1.7434869414222878,5.234986075165476,4.694526442172967,1E-42,"AT3G52310","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT5G06530.1); Has 399105 Blast hits to 362643 proteins in 4152 species: Archae - 6998; Bacteria - 314182; Metazoa - 9528; Fungi - 7070; Plants - 5758; Viruses - 7; Other Eukaryotes - 55562 (source: NCBI BLink).",9e-35,"AN5194.2","hypothetical protein",9e-11,"skfe","SkfA peptide export ATP-binding protein SkfE",6e-41,"chlredraft_180799","hypothetical protein",3E-32,"ADP1","Putative ATP-dependent permease of the ABC transporter family of proteins",2e-42,"ppabcg3","ATP-binding cassette transporter, subfamily G, member 3, group WBC protein PpABCG3"]
["TRINITY_DN24918_c1_g1_i1@@W-35D-3@@KO",0.062437256169098454,0,2.0188366525133823,0,4e-33,"ABCG25","ATP-binding casette family G25 \\\\ Encodes a plasma membrane localized ABC transporter involved in abscisic acid transport and responses. \\\\ ATP-binding casette family G25 (ABCG25); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATP-binding cassette 14 (TAIR:AT1G31770.1); Has 400795 Blast hits to 363827 proteins in 4147 species: Archae - 6947; Bacteria - 316897; Metazoa - 8938; Fungi - 6866; Plants - 5594; Viruses - 13; Other Eukaryotes - 55540 (source: NCBI BLink).",6e-33,"AN5194.2","hypothetical protein",3e-16,"glnq","glutamine transport ATP-binding protein GlnQ",1e-29,"chlredraft_180799","hypothetical protein",2E-35,"ADP1","Putative ATP-dependent permease of the ABC transporter family of proteins",6e-35,"ppabcg5","ATP-binding cassette transporter, subfamily G, member 5, group WBC protein PpABCG5"]
["TRINITY_DN16854_c0_g1_i1@@W-35D-3@@KO",0,0,0.8158419857400742,0,3e-12,"AT4G27420","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, flower, egg cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 389492 Blast hits to 355855 proteins in 4126 species: Archae - 7031; Bacteria - 309319; Metazoa - 8330; Fungi - 6395; Plants - 5225; Viruses - 7; Other Eukaryotes - 53185 (source: NCBI BLink).",2E-12,"AN6369.2","hypothetical protein",2e-13,"yxdl","ABC transporter ATP-binding protein",8e-11,"chlredraft_180799","hypothetical protein",9e-11,"Z74817","Putative ABC transporter",3E-11,"ppabcg4","ATP-binding cassette transporter, subfamily G, member 4, group WBC protein PpABCG4"]
["Contig1207@@KO",4.694134744638914,2.0753686181514,6.186661628691289,2.823455589866942,1e-31,"AT3G52310","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT5G06530.1); Has 399105 Blast hits to 362643 proteins in 4152 species: Archae - 6998; Bacteria - 314182; Metazoa - 9528; Fungi - 7070; Plants - 5758; Viruses - 7; Other Eukaryotes - 55562 (source: NCBI BLink).",2E-12,"AN9344.2","hypothetical protein","","","",1E-25,"chlredraft_180799","hypothetical protein","","","",9e-30,"ppabcg3","ATP-binding cassette transporter, subfamily G, member 3, group WBC protein PpABCG3"]
["TRINITY_DN281_c1_g1_i1@@W-35D-3@@KO",0.1274454581804539,0,0.716661195316771,0,2E-19,"AT3G25620","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP-binding cassette 14 (TAIR:AT1G31770.1); Has 397244 Blast hits to 359819 proteins in 4062 species: Archae - 7097; Bacteria - 312965; Metazoa - 9004; Fungi - 6846; Plants - 5563; Viruses - 13; Other Eukaryotes - 55756 (source: NCBI BLink).",8e-19,"AN8928.2","similar to T30566 ATP-binding cassette multidrug transport protein - Emericella nidulans","","","",8e-18,"chlredraft_180799","hypothetical protein",1e-18,"SNQ2","Plasma membrane ATP-binding cassette (ABC) transporter, multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species",2e-18,"ppabcg14","ATP-binding cassette transporter, subfamily G, member 14, group WBC protein PpABCG14"]
["Contig14734",22.167460536566526,17.671783429229542,16.030579368927775,16.907897663793815,2E-14,"AT4G16510","YbaK/aminoacyl-tRNA synthetase-associated domain \\\\ YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1E-10,"chlredraft_205706","YbaK/prolyl-tRNA synthetase-like protein","","","",2e-11,"PHYPADRAFT_117069","hypothetical protein"]
["Contig12405",3.918865509941606,9.174091493506987,6.925873050348123,10.152344999173502,2e-21,"AT5G52660","Homeodomain-like superfamily protein \\\\ Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1357 Blast hits to 1347 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 5; Plants - 1057; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).","","","","","","",3e-18,"chlredraft_112628","hypothetical protein","","","",3E-23,"PHYPADRAFT_90560","hypothetical protein"]
["TRINITY_DN48509_c0_g1_i1@@W-35D-3@@KO",0.28383049638441704,0.11074152863341248,0.665024034955519,0.25230911345235973,4e-15,"AT3G09600","Homeodomain-like superfamily protein \\\\ Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).","","","","","","",6e-14,"chlredraft_112628","hypothetical protein","","","",3e-15,"PHYPADRAFT_87648","hypothetical protein"]
["Contig11413",103.1807333915116,103.88858227327425,67.78550869240726,103.56547021591564,1E-35,"RSP31","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. \\\\ RSP31; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G46610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-20,"AN4452.2","hypothetical protein","","","",6e-30,"chlredraft_80366","hypothetical protein",2e-18,"RPL36B","Ribosomal 60S subunit protein L36B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L36, no bacterial homolog; RPL36B has a paralog, RPL36A, that arose from the whole genome duplication",3e-47,"PHYPADRAFT_167387","hypothetical protein"]
["Contig7124",17.672726845978982,8.222464011671974,8.108299871928656,9.958459872081276,"","","","","","","","","",3e-19,"cuta1","copper-binding protein CutA","","","",2e-18,"PHYPADRAFT_154010","hypothetical protein"]
["Contig11392@@KO",1.035494347716188,0.18646919159596662,13.26942994453709,0,3e-33,"NAP4","non-intrinsic ABC protein 4 \\\\ member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. \\\\ non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).","","","","","","",7e-13,"chlredraft_156217","hypothetical protein","","","",2e-32,"PHYPADRAFT_5975","hypothetical protein"]
["TRINITY_DN56067_c0_g1_i1@@W-35D-3@@KO",0.02833973563201722,0,1.8725058700395685,0.03778861149809704,9e-62,"AT5G02370","ATP binding microtubule motor family protein \\\\ ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G23910.1); Has 10070 Blast hits to 9659 proteins in 326 species: Archae - 0; Bacteria - 33; Metazoa - 4508; Fungi - 1335; Plants - 1813; Viruses - 0; Other Eukaryotes - 2381 (source: NCBI BLink).",8e-54,"AN5343.2","similar to kinesin (KINA protein)","","","",4e-54,"chlredraft_119255","hypothetical protein",7e-54,"KIP3","Kinesin-related motor protein involved in mitotic spindle positioning",3E-52,"PHYPADRAFT_113725","hypothetical protein"]
["TRINITY_DN40519_c0_g1_i1@@W-35D-3@@KO",0.12398127548313112,0,1.220066984874045,0,1E-78,"CIP111","Cam interacting protein 111 \\\\ encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined. \\\\ Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink).",1e-66,"AN7254.2","similar to Cdc48p",9e-41,"ftsh","ATP-dependent zinc metalloprotease FtsH",2e-72,"chlredraft_120247","hypothetical protein",8e-75,"AFG2","ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; releases Rlp24p from purified pre-60S particles in vitro; may be involved in degradation of aberrant mRNAs",4e-75,"PHYPADRAFT_30446","hypothetical protein"]
["Contig4186",29.117281233194415,18.009543472533252,10.542332404426807,10.495634915699348,4E-41,"AT5G03340","ATPase, AAA-type, CDC48 protein \\\\ ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-40,"AN7254.2","similar to Cdc48p",2E-14,"ftsh","ATP-dependent zinc metalloprotease FtsH",1E-42,"chlredraft_120247","hypothetical protein",1E-41,"AFG2","ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; releases Rlp24p from purified pre-60S particles in vitro; may be involved in degradation of aberrant mRNAs",3e-47,"PHYPADRAFT_30446","hypothetical protein"]
["TRINITY_DN41735_c0_g1_i1@@W-35D-3@@KO",0,0,1.1457592777791636,0,9e-18,"AT1G50380","Prolyl oligopeptidase family protein \\\\ Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink).","","","","","","",3e-12,"chlredraft_170526","oligopeptidase","","","",8e-16,"PHYPADRAFT_108694","hypothetical protein"]
["TRINITY_DN10752_c0_g1_i1@@W-35D-3@@KO",0.08771549753310592,0,1.356433638909273,0,1e-31,"AT1G50380","Prolyl oligopeptidase family protein \\\\ Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink).","","","","","","",2e-21,"chlredraft_170526","oligopeptidase","","","",2e-32,"PHYPADRAFT_110753","hypothetical protein"]
["TRINITY_DN1384_c0_g1_i2@@W-25D-4@@WT",14.43890740079131,9.002258313349786,12.945469568583292,11.355368539537993,3e-111,"AT1G50380","Prolyl oligopeptidase family protein \\\\ Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink).","","","","","","",1E-41,"chlredraft_170526","oligopeptidase","","","",2E-119,"PHYPADRAFT_108694","hypothetical protein"]
["Contig3574",15.647120752396164,9.702243731551182,14.039902488223186,11.63961630320166,4e-111,"AT1G50380","Prolyl oligopeptidase family protein \\\\ Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink).","","","","","","",2E-41,"chlredraft_170526","oligopeptidase","","","",3e-119,"PHYPADRAFT_108694","hypothetical protein"]
["Contig7811",0.6085878620976731,0.28494168603428605,6.160065330531796,0,3e-41,"UBP6","ubiquitin-specific protease 6 \\\\ Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. \\\\ ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4793 Blast hits to 4476 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2508; Fungi - 875; Plants - 657; Viruses - 2; Other Eukaryotes - 751 (source: NCBI BLink).",1e-18,"AN8699.2","hypothetical protein","","","",8e-33,"chlredraft_58437","hypothetical protein",1E-26,"UBP6","Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance",3e-39,"PHYPADRAFT_207886","hypothetical protein"]
["Contig23849@@KO",0.4242982206252566,0,4.846454227815373,0,4e-44,"UBP6","ubiquitin-specific protease 6 \\\\ Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. \\\\ ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4793 Blast hits to 4476 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2508; Fungi - 875; Plants - 657; Viruses - 2; Other Eukaryotes - 751 (source: NCBI BLink).",2e-27,"AN8699.2","hypothetical protein","","","",1e-36,"chlredraft_58437","hypothetical protein",3e-25,"UBP6","Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance",1e-37,"PHYPADRAFT_207886","hypothetical protein"]
["Contig4110",41.60289654607954,18.22920506037471,31.779288752050235,28.262822601272514,5e-57,"UBP6","ubiquitin-specific protease 6 \\\\ Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. \\\\ ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4793 Blast hits to 4476 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2508; Fungi - 875; Plants - 657; Viruses - 2; Other Eukaryotes - 751 (source: NCBI BLink).",5e-46,"AN8699.2","hypothetical protein","","","",1e-39,"chlredraft_58437","hypothetical protein",8e-28,"UBP6","Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance",2e-58,"PHYPADRAFT_207886","hypothetical protein"]
["TRINITY_DN14776_c0_g1_i1@@W-35D-3@@KO",0.33460583614945427,0,3.214368424297229,0,3e-29,"MIND","septum site-determining protein (MIND) \\\\ Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus.  Its ATPase activity is stimulated by AtMinE1, a topological specificity factor. \\\\ MIND; FUNCTIONS IN: calcium-dependent ATPase activity, protein binding, ATPase activity, protein homodimerization activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Septum site-determining protein MinD (InterPro:IPR010223), Cobyrinic acid a,c-diamide synthase (InterPro:IPR002586); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","",6e-38,"mind","septum site-determining protein MinD",4E-35,"mind1","chloroplast septum site-determining protein","","","",2e-28,"PHYPADRAFT_205884","hypothetical protein"]
["Contig20269@@KO",0.42680023838555325,0.026293219343754753,6.536886330533222,0,1E-27,"AT5G06580","FAD-linked oxidases family protein \\\\ Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo. \\\\ FAD-linked oxidases family protein; FUNCTIONS IN: glycolate oxidase activity, glycolate dehydrogenase activity, D-lactate dehydrogenase (cytochrome) activity, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD-linked oxidases family protein (TAIR:AT4G36400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-23,"AN8317.2","hypothetical protein",2e-27,"glcd","glycolate oxidase subunit GlcD",7e-17,"chlredraft_96705","hypothetical protein",8e-21,"DLD1","D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane",4e-20,"PHYPADRAFT_176596","hypothetical protein"]
["Contig14408",22.410612435532236,116.32699563323271,90.52980792596698,256.1704222766064,2e-129,"AT5G06580","FAD-linked oxidases family protein \\\\ Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo. \\\\ FAD-linked oxidases family protein; FUNCTIONS IN: glycolate oxidase activity, glycolate dehydrogenase activity, D-lactate dehydrogenase (cytochrome) activity, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD-linked oxidases family protein (TAIR:AT4G36400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",6e-111,"AN8317.2","hypothetical protein",1e-64,"glcd","glycolate oxidase subunit GlcD",2E-91,"chlredraft_96705","hypothetical protein",7e-96,"DLD1","D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane",6e-117,"PHYPADRAFT_176596","hypothetical protein"]
["TRINITY_DN27134_c0_g1_i1@@W-35D-5@@WT",24.776945214674623,115.96199479449993,85.78481145329731,254.20159599573404,2e-129,"AT5G06580","FAD-linked oxidases family protein \\\\ Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo. \\\\ FAD-linked oxidases family protein; FUNCTIONS IN: glycolate oxidase activity, glycolate dehydrogenase activity, D-lactate dehydrogenase (cytochrome) activity, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD-linked oxidases family protein (TAIR:AT4G36400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",5e-111,"AN8317.2","hypothetical protein",1e-64,"glcd","glycolate oxidase subunit GlcD",2E-91,"chlredraft_96705","hypothetical protein",6e-96,"DLD1","D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane",5E-117,"PHYPADRAFT_176596","hypothetical protein"]
["Contig12801",377.01259150324415,619.3481835615595,182.76487081421504,344.1116327944159,5e-23,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",2e-31,"AN5712.2","similar to metacaspase","","","",4e-24,"chlredraft_205713","type I metacaspase",2e-29,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",2e-24,"PHYPADRAFT_116469","hypothetical protein"]
["Contig1023@@KO",2.1552294760359483,1.8967696377749783,1.9135979560814307,1.4261031939861497,1e-12,"MC7","metacaspase 7 \\\\ metacaspase 7 (MC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1196 Blast hits to 1169 proteins in 284 species: Archae - 7; Bacteria - 340; Metazoa - 0; Fungi - 299; Plants - 319; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).",4e-16,"AN5712.2","similar to metacaspase","","","",2E-12,"chlredraft_205713","type I metacaspase",2E-14,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",3e-13,"PHYPADRAFT_123059","hypothetical protein"]
["Contig5565@@KO",0.8239762285045006,0.11346671166465977,9.266894203424915,0,6e-24,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",9e-25,"AN5712.2","similar to metacaspase","","","",9e-26,"chlredraft_205713","type I metacaspase",1E-25,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",2e-25,"PHYPADRAFT_116469","hypothetical protein"]
["Contig20996@@KO",0.5647018564034013,0,5.610006402957521,0.05019877235498729,1e-20,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",1e-24,"AN5712.2","similar to metacaspase","","","",9e-22,"chlredraft_205713","type I metacaspase",1E-25,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",7e-22,"PHYPADRAFT_127529","hypothetical protein"]
["Contig1024@@KO",2.337312649262035,1.7462761324672005,1.607964005559626,1.8788052384660219,8e-22,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",1e-29,"AN5712.2","similar to metacaspase","","","",7e-24,"chlredraft_205713","type I metacaspase",4e-28,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",2e-24,"PHYPADRAFT_127529","hypothetical protein"]
["Contig1025@@KO",2.8767771473098307,2.630685690565504,2.7298546775966632,1.87001883173695,3e-25,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",3e-33,"AN5712.2","similar to metacaspase","","","",1E-26,"chlredraft_205713","type I metacaspase",5e-31,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",7e-28,"PHYPADRAFT_127529","hypothetical protein"]
["Contig15681@@KO",2.672718937940128,0.2346320128640073,26.865125147495302,0.08909604777269141,2E-45,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",2e-62,"AN5712.2","similar to metacaspase","","","",1e-37,"chlredraft_205713","type I metacaspase",2e-61,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",5e-44,"PHYPADRAFT_127529","hypothetical protein"]
["TRINITY_DN38491_c0_g1_i2@@W-35D-3@@KO",0.3003913745674477,0.043951143946363014,2.0586931217288527,0,5e-37,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",9e-49,"AN5712.2","similar to metacaspase","","","",5e-35,"chlredraft_205713","type I metacaspase",3e-45,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",7e-36,"PHYPADRAFT_127529","hypothetical protein"]
["TRINITY_DN24966_c0_g1_i6@@W-25D-4@@WT",2.725431143156445,2.5962200995174793,2.2825742989011912,1.778403613989399,2e-21,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",9e-30,"AN5712.2","similar to metacaspase","","","",3E-24,"chlredraft_205713","type I metacaspase",6e-27,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",1E-14,"PHYPADRAFT_127529","hypothetical protein"]
["TRINITY_DN24966_c0_g1_i3@@W-25D-4@@WT",2.5034077017465335,2.535157902490052,2.510989160481838,1.9503388010325864,1e-15,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",2E-19,"AN5712.2","similar to metacaspase","","","",3e-15,"chlredraft_205713","type I metacaspase",4e-18,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",1e-17,"PHYPADRAFT_116469","hypothetical protein"]
["Contig12286@@KO",0.30429393104883656,0.10685313226285727,3.5505932113481875,0,7e-37,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",1e-48,"AN5712.2","similar to metacaspase","","","",5e-35,"chlredraft_205713","type I metacaspase",4e-45,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",9e-36,"PHYPADRAFT_127529","hypothetical protein"]
["Contig1026@@KO",1.8217880992160784,1.8680610604916295,1.3546340870476838,1.2246372501098028,2E-12,"MC7","metacaspase 7 \\\\ metacaspase 7 (MC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1196 Blast hits to 1169 proteins in 284 species: Archae - 7; Bacteria - 340; Metazoa - 0; Fungi - 299; Plants - 319; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).",5e-16,"AN5712.2","similar to metacaspase","","","",2E-12,"chlredraft_205713","type I metacaspase",2E-14,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",4e-13,"PHYPADRAFT_123059","hypothetical protein"]
["Contig11599",5.006148455961687,5.456152641173388,4.885704265972386,6.895940521235325,2e-25,"MC3","metacaspase 3 \\\\ metacaspase 3 (MC3); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 1094 Blast hits to 1088 proteins in 266 species: Archae - 4; Bacteria - 271; Metazoa - 0; Fungi - 282; Plants - 308; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).",7e-32,"AN5712.2","similar to metacaspase","","","",5e-26,"chlredraft_205713","type I metacaspase",5e-32,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",1E-26,"PHYPADRAFT_127529","hypothetical protein"]
["Contig11499",33.636212344382024,28.817965973922114,28.906551778970154,27.757363964813397,5e-40,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",8e-46,"AN5712.2","similar to metacaspase","","","",1E-42,"chlredraft_205713","type I metacaspase",7e-44,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",2e-37,"PHYPADRAFT_116469","hypothetical protein"]
["TRINITY_DN24966_c0_g1_i4@@W-25D-4@@WT",2.58283561659693,2.2013724007857167,2.0446410259905563,1.7888686941328615,2E-12,"MC7","metacaspase 7 \\\\ metacaspase 7 (MC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1196 Blast hits to 1169 proteins in 284 species: Archae - 7; Bacteria - 340; Metazoa - 0; Fungi - 299; Plants - 319; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).",6e-16,"AN5712.2","similar to metacaspase","","","",2E-12,"chlredraft_205713","type I metacaspase",3e-14,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",4e-13,"PHYPADRAFT_123059","hypothetical protein"]
["TRINITY_DN31635_c1_g1_i1@@W-25D-2@@KO",25.094311092232136,23.44471136587441,22.063443870250087,19.78763652245327,4e-40,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",7e-46,"AN5712.2","similar to metacaspase","","","",8e-43,"chlredraft_205713","type I metacaspase",6e-44,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",2e-37,"PHYPADRAFT_116469","hypothetical protein"]
["TRINITY_DN39472_c1_g6_i5@@W-35D-3@@KO",1.7466669879291852,1.6314535785888151,1.5873928756202094,1.0586504129179832,1e-12,"MC7","metacaspase 7 \\\\ metacaspase 7 (MC7); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, male gametophyte, root; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 4 (TAIR:AT1G79340.1); Has 1196 Blast hits to 1169 proteins in 284 species: Archae - 7; Bacteria - 340; Metazoa - 0; Fungi - 299; Plants - 319; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).",4e-16,"AN5712.2","similar to metacaspase","","","",1e-12,"chlredraft_205713","type I metacaspase",2E-14,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",3e-13,"PHYPADRAFT_123059","hypothetical protein"]
["Contig22419@@KO",1.525357635067232,0.06612727524654878,36.05730837975775,0.18832720658601815,3e-41,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",1e-66,"AN5712.2","similar to metacaspase","","","",5e-39,"chlredraft_205713","type I metacaspase",3e-55,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",3e-41,"PHYPADRAFT_116469","hypothetical protein"]
["Contig7768",7.88430553879873,5.683011475353128,4.8020208501270005,5.657565904148041,6e-18,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",4e-18,"AN5712.2","similar to metacaspase","","","",1e-17,"chlredraft_205713","type I metacaspase",4e-17,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",5e-19,"PHYPADRAFT_127529","hypothetical protein"]
["Contig3923",2.7945172544879497,0.6541984384975338,29.81103947893928,0.26302937927431125,8e-46,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",2e-62,"AN5712.2","similar to metacaspase","","","",2e-37,"chlredraft_205713","type I metacaspase",4e-61,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",4e-44,"PHYPADRAFT_127529","hypothetical protein"]
["Contig3931",10.230489560046282,14.379035419768465,8.884769604656414,9.559571410188836,3e-39,"AMC1","metacaspase 1 \\\\ Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain \\\\ metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).",5e-39,"AN5712.2","similar to metacaspase","","","",5e-33,"chlredraft_205713","type I metacaspase",2e-34,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",3e-39,"PHYPADRAFT_116469","hypothetical protein"]
["Contig12472@@KO",0.14540756973608837,0.028366677916164942,3.236599078402084,0.06462951563824426,8e-30,"MC2","metacaspase 2 \\\\ metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).",5e-33,"AN5712.2","similar to metacaspase","","","",2e-28,"chlredraft_205713","type I metacaspase",4e-33,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",6e-32,"PHYPADRAFT_127529","hypothetical protein"]
["Contig2731",6.288501522183253,3.165293869750145,3.059307022844119,1.9202698774937716,5e-24,"AT2G26900","Sodium Bile acid symporter family \\\\ Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport, organic anion transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657), Bile acid transporter (InterPro:IPR004710); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT1G78560.1); Has 5023 Blast hits to 5015 proteins in 1109 species: Archae - 92; Bacteria - 2706; Metazoa - 448; Fungi - 4; Plants - 268; Viruses - 0; Other Eukaryotes - 1505 (source: NCBI BLink).","","","",2e-21,"yocs","sodium-dependent transporter YocS",1e-17,"chlredraft_183831","hypothetical protein","","","",5e-26,"PHYPADRAFT_142102","hypothetical protein"]
["Contig14147",8.499542635893661,3.2529954108457244,9.31161606528632,8.15264551730404,9e-64,"AT2G26900","Sodium Bile acid symporter family \\\\ Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport, organic anion transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657), Bile acid transporter (InterPro:IPR004710); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT1G78560.1); Has 5023 Blast hits to 5015 proteins in 1109 species: Archae - 92; Bacteria - 2706; Metazoa - 448; Fungi - 4; Plants - 268; Viruses - 0; Other Eukaryotes - 1505 (source: NCBI BLink).","","","",8e-38,"yocs","sodium-dependent transporter YocS",1e-37,"chlredraft_183831","hypothetical protein","","","",9e-66,"PHYPADRAFT_142102","hypothetical protein"]
["Contig3378",4.919370571203896,0.7197675512881209,2.1323552121771474,0.7106189505654444,2e-23,"AT4G23420","NAD(P)-binding Rossmann-fold superfamily protein \\\\ NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G23430.2); Has 55665 Blast hits to 55601 proteins in 3020 species: Archae - 461; Bacteria - 37265; Metazoa - 4181; Fungi - 3321; Plants - 1828; Viruses - 0; Other Eukaryotes - 8609 (source: NCBI BLink).",5e-20,"AN2813.2","hypothetical protein","","","",2e-28,"chlredraft_191453","hypothetical protein",3e-17,"ENV9","Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts",4e-21,"PHYPADRAFT_193394","hypothetical protein"]
["Contig12887",5.34853070396659,3.130236921217538,3.4070778138010427,1.5043657169488331,"","","","","","","","","",8e-11,"chlredraft_191453","hypothetical protein","","","","","",""]
["Contig6280",8.88358754219506,1.0473077899667267,213.38639941677457,0.7669750484149165,2e-25,"AT1G23410","Ribosomal protein S27a / Ubiquitin family protein \\\\ Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink).",3e-25,"AN4872.2","similar to AF175521_1 UBI1","","","",3e-15,"rps27a","ribosomal protein S27a",7e-25,"RPS31","Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog",3e-27,"PHYPADRAFT_209739","hypothetical protein"]
["Contig5676@@KO",634.149832580767,791.1651035379449,429.0679113584162,671.1194941547161,5e-24,"UBQ6","ubiquitin 6 \\\\ polyubiquitin gene \\\\ ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).",1e-21,"AN4872.2","similar to AF175521_1 UBI1","","","",9e-21,"rps27a","ribosomal protein S27a",7e-19,"RPS31","Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog",2e-23,"PHYPADRAFT_168664","hypothetical protein"]
["TRINITY_DN17753_c0_g1_i1@@W-35D-3@@KO",0,0,5.91328305226704,0,3E-32,"UBQ6","ubiquitin 6 \\\\ polyubiquitin gene \\\\ ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).",4e-31,"AN4872.2","similar to AF175521_1 UBI1","","","",5e-25,"rps27a","ribosomal protein S27a",1e-30,"RPS31","Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog",2e-31,"PHYPADRAFT_182330","hypothetical protein"]
["Contig4055@@KO",36.5236097874111,24.849970242054887,31.81884990599461,25.68424112242178,5e-23,"IWS1","Transcription elongation factor (TFIIS) family protein \\\\ The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression. \\\\ IWS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of RNA elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT4G19000.1); Has 1384 Blast hits to 1350 proteins in 337 species: Archae - 10; Bacteria - 21; Metazoa - 458; Fungi - 242; Plants - 332; Viruses - 8; Other Eukaryotes - 313 (source: NCBI BLink).",9e-14,"AN1065.2","hypothetical protein","","","",5e-16,"chlredraft_144201","hypothetical protein",7e-16,"SPN1","Protein involved in RNA polymerase II transcription; interacts genetically or physically with RNAP II, TBP, TFIIS, and chromatin remodelling factors; central domain highly conserved throughout eukaryotes; mutations confer an Spt- phenotype",1E-22,"PHYPADRAFT_132629","hypothetical protein"]
["Contig10841",36.980311735029225,23.27675105462598,30.894200209567362,26.538184374280203,5e-23,"IWS1","Transcription elongation factor (TFIIS) family protein \\\\ The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression. \\\\ IWS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of RNA elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT4G19000.1); Has 1384 Blast hits to 1350 proteins in 337 species: Archae - 10; Bacteria - 21; Metazoa - 458; Fungi - 242; Plants - 332; Viruses - 8; Other Eukaryotes - 313 (source: NCBI BLink).",9e-14,"AN1065.2","hypothetical protein","","","",5e-16,"chlredraft_144201","hypothetical protein",7e-16,"SPN1","Protein involved in RNA polymerase II transcription; interacts genetically or physically with RNAP II, TBP, TFIIS, and chromatin remodelling factors; central domain highly conserved throughout eukaryotes; mutations confer an Spt- phenotype",1E-22,"PHYPADRAFT_132629","hypothetical protein"]
["TRINITY_DN33611_c0_g1_i1@@W-35D-3@@KO",0.11182311169381762,0.0654446711149715,3.537069770434386,0.03727663676167121,6e-99,"CDC20.1","Transducin family protein / WD-40 repeat family protein \\\\ putative cdc20 protein (CDC20.1) \\\\ CDC20.1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33260.1); Has 49595 Blast hits to 24757 proteins in 709 species: Archae - 60; Bacteria - 7548; Metazoa - 19325; Fungi - 10981; Plants - 5978; Viruses - 0; Other Eukaryotes - 5703 (source: NCBI BLink).",2e-97,"AN2965.2","hypothetical protein","","","",2e-98,"cdc20","activator and specificity subunit of anaphase promoting complex",1e-81,"CDH1","Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including Cdc20p, Ase1p, Cin8p and Fin1p",3e-108,"PHYPADRAFT_119089","hypothetical protein"]
["Contig14881@@KO",0.34944722404318007,0,1.1462726107889214,0,8e-69,"FZR2","FIZZY-related 2 \\\\ FIZZY-related 2 (FZR2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: trichome branching, signal transduction, DNA endoreduplication, cell growth; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: cell cycle switch protein 52  A2 (TAIR:AT4G11920.1); Has 43458 Blast hits to 22953 proteins in 693 species: Archae - 46; Bacteria - 6865; Metazoa - 16440; Fungi - 9775; Plants - 5102; Viruses - 0; Other Eukaryotes - 5230 (source: NCBI BLink).",6e-77,"AN2965.2","hypothetical protein","","","",2E-50,"cdc20","activator and specificity subunit of anaphase promoting complex",7e-58,"CDH1","Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including Cdc20p, Ase1p, Cin8p and Fin1p",4E-70,"PHYPADRAFT_139794","hypothetical protein"]
["Contig13919",29.06948382454166,4.804376485628453,29.106842132334926,6.616156063125157,1e-93,"CDC20.1","Transducin family protein / WD-40 repeat family protein \\\\ putative cdc20 protein (CDC20.1) \\\\ CDC20.1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33260.1); Has 49595 Blast hits to 24757 proteins in 709 species: Archae - 60; Bacteria - 7548; Metazoa - 19325; Fungi - 10981; Plants - 5978; Viruses - 0; Other Eukaryotes - 5703 (source: NCBI BLink).",9e-91,"AN2965.2","hypothetical protein","","","",5e-102,"cdc20","activator and specificity subunit of anaphase promoting complex",2e-72,"CDH1","Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including Cdc20p, Ase1p, Cin8p and Fin1p",8e-113,"PHYPADRAFT_129004","hypothetical protein"]
["Contig5850",13.690613329691704,13.3800224840885,25.506323676879866,21.17964737478696,6e-26,"emb1644","Small nuclear ribonucleoprotein family protein \\\\ embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",5e-24,"AN6213.2","hypothetical protein","","","",1E-22,"smp6b","U6 snRNA-associated Sm-like protein LSm4",4e-11,"LSM4","Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; forms cytoplasmic foci upon DNA replication stress",8e-26,"PHYPADRAFT_121610","hypothetical protein"]
["TRINITY_DN30613_c0_g1_i1@@W-35D-5@@WT",14.841582961255613,17.28482750876485,22.7518343332493,22.773394524191385,5e-26,"emb1644","Small nuclear ribonucleoprotein family protein \\\\ embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4e-24,"AN6213.2","hypothetical protein","","","",1E-22,"smp6b","U6 snRNA-associated Sm-like protein LSm4",4e-11,"LSM4","Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; forms cytoplasmic foci upon DNA replication stress",7e-26,"PHYPADRAFT_121610","hypothetical protein"]
["Contig9321",3.6329726645952563,5.102888609040842,4.7358632342960405,4.403870958886461,1E-22,"emb1644","Small nuclear ribonucleoprotein family protein \\\\ embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-21,"AN6213.2","hypothetical protein","","","",3e-19,"smp6b","U6 snRNA-associated Sm-like protein LSm4","","","",5e-23,"PHYPADRAFT_121610","hypothetical protein"]
["TRINITY_DN53687_c0_g1_i1@@W-35D-3@@KO",0.24275325367705505,0,2.7301378869210327,0.16184534168232598,7e-29,"emb1644","Small nuclear ribonucleoprotein family protein \\\\ embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4e-22,"AN6213.2","hypothetical protein","","","",2e-25,"smp6b","U6 snRNA-associated Sm-like protein LSm4",5e-12,"LSM4","Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; forms cytoplasmic foci upon DNA replication stress",1e-28,"PHYPADRAFT_121610","hypothetical protein"]
["Contig20669@@KO",0.9038463169116854,0,7.549124370299975,0,4e-25,"AT1G19310","RING/U-box superfamily protein \\\\ RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).","","","","","","",4e-18,"chlredraft_100664","hypothetical protein","","","",1e-24,"PHYPADRAFT_140226","hypothetical protein"]
["Contig2098",9.756751632887731,10.076745718033692,8.202843924321098,8.736968892208479,3E-28,"AT3G59810","Small nuclear ribonucleoprotein family protein \\\\ Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G43810.2); Has 1159 Blast hits to 1159 proteins in 301 species: Archae - 313; Bacteria - 0; Metazoa - 297; Fungi - 260; Plants - 135; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).","","","","","","",6e-26,"smp6a","U6 small ribonucleoprotein F","","","",5e-30,"PHYPADRAFT_160036","hypothetical protein"]
["Contig7016",70.1509249485667,67.28256303358133,58.10252023463105,65.27801984042681,4e-123,"HDR","4-hydroxy-3-methylbut-2-enyl diphosphate reductase \\\\ Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling. \\\\ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to antibiotic, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LytB protein (InterPro:IPR003451); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-119,"ids1","4-hydroxy-3-methylbut-2-enyl diphosphate reductase","","","",2e-124,"PHYPADRAFT_206243","hypothetical protein"]
["Contig5073@@KO",35.477010635914624,36.967765764810736,32.33708493262917,37.096357520668455,1e-76,"HDR","4-hydroxy-3-methylbut-2-enyl diphosphate reductase \\\\ Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling. \\\\ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; INVOLVED IN: response to antibiotic, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LytB protein (InterPro:IPR003451); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",2e-72,"ids1","4-hydroxy-3-methylbut-2-enyl diphosphate reductase","","","",6e-76,"PHYPADRAFT_206243","hypothetical protein"]
["Contig24062@@KO",0,0,2.0642419629974764,0,2e-177,"LBA1","RNA helicase, putative \\\\ Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. \\\\ LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).",2e-151,"AN0646.2","similar to possible regulator of nonsense transcripts","","","",2e-124,"upf1","UPF1 protein",9e-118,"NAM7","ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance; forms cytoplasmic foci upon DNA replication stress",0,"PHYPADRAFT_73870","hypothetical protein"]
["Contig6063",33.85040306253607,29.483006700686428,26.59825424925365,32.49444259315489,0,"LBA1","RNA helicase, putative \\\\ Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. \\\\ LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).",0,"AN0646.2","similar to possible regulator of nonsense transcripts","","","",0,"upf1","UPF1 protein",0,"NAM7","ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance; forms cytoplasmic foci upon DNA replication stress",0,"PHYPADRAFT_73870","hypothetical protein"]
["TRINITY_DN39949_c4_g2_i1@@W-35D-3@@KO",44.285702054817584,42.34250568084268,13.597910868097491,34.644137538912545,1e-47,"LBA1","RNA helicase, putative \\\\ Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. \\\\ LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).",2e-43,"AN0646.2","similar to possible regulator of nonsense transcripts","","","",2E-41,"upf1","UPF1 protein",1E-41,"NAM7","ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance; forms cytoplasmic foci upon DNA replication stress",4e-48,"PHYPADRAFT_73870","hypothetical protein"]
["Contig19791@@KO",0.19379005268942007,0,2.3974175943512734,0,4e-100,"LBA1","RNA helicase, putative \\\\ Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. \\\\ LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).",1E-87,"AN0646.2","similar to possible regulator of nonsense transcripts","","","",3e-87,"upf1","UPF1 protein",1e-80,"NAM7","ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; involved in telomere maintenance; forms cytoplasmic foci upon DNA replication stress",3e-95,"PHYPADRAFT_73870","hypothetical protein"]
["TRINITY_DN36466_c0_g1_i1@@W-25D-4@@WT",0,0.3073916370551692,0.18459455030886526,0.17508723327451628,3e-18,"SDE3","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. \\\\ SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink).",5e-11,"AN0646.2","similar to possible regulator of nonsense transcripts","","","",2e-11,"upf1","UPF1 protein","","","",3e-22,"RHEL1501","RNA helicase"]
["TRINITY_DN17913_c0_g1_i1@@W-35D-3@@KO",0.13541079931673228,0.1584988128565716,2.474720690078225,0,1E-26,"GAS41","YEATS family protein \\\\ The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man. \\\\ GLIOMAS 41 (GAS41); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: TBP-associated factor 14 (TAIR:AT2G18000.2); Has 807 Blast hits to 807 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 350; Fungi - 284; Plants - 64; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).",2e-18,"AN1859.2","hypothetical protein","","","",9e-24,"tf2f","transcription factor IIF",5e-23,"YAF9","Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to antagonize silencing near telomeres; interacts directly with Swc4p, has homology to human leukemogenic protein AF9, contains a YEATS domain",3E-28,"YDG1501","hypothetical protein"]
["TRINITY_DN24953_c0_g1_i3@@W-25D-4@@WT",4.040641245545443,2.818641368978404,2.8688948949101505,2.521585993815404,1e-43,"AT5G26740","Protein of unknown function (DUF300) \\\\ Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).",2e-21,"AN6328.2","hypothetical protein","","","",2e-34,"chlredraft_78039","hypothetical protein",5e-29,"Z28276","Putative protein of unknown function",2e-37,"PHYPADRAFT_23257","hypothetical protein"]
["Contig2802",3.6837194776340265,2.555144590131129,2.7811238136899252,2.1103083406009078,1e-43,"AT5G26740","Protein of unknown function (DUF300) \\\\ Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).",2e-21,"AN6328.2","hypothetical protein","","","",2e-34,"chlredraft_78039","hypothetical protein",5e-29,"Z28276","Putative protein of unknown function",2e-37,"PHYPADRAFT_23257","hypothetical protein"]
["Contig18409@@KO",0.22470936446683318,0,1.2109530136942848,0,2E-46,"AT5G26740","Protein of unknown function (DUF300) \\\\ Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).",1e-33,"AN6328.2","hypothetical protein","","","",8e-45,"chlredraft_78039","hypothetical protein",7e-28,"Z28276","Putative protein of unknown function",1e-39,"PHYPADRAFT_137975","hypothetical protein"]
["Contig10211@@WT",4.023635179697187,3.001773435324458,2.880051708390357,2.2797072414110486,1e-43,"AT5G26740","Protein of unknown function (DUF300) \\\\ Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).",2e-21,"AN6328.2","hypothetical protein","","","",2e-34,"chlredraft_78039","hypothetical protein",5e-29,"Z28276","Putative protein of unknown function",2e-37,"PHYPADRAFT_23257","hypothetical protein"]
["Contig10212@@WT",3.2902324487409413,2.8442559520621975,3.140229131691041,2.0124969341898424,1e-43,"AT5G26740","Protein of unknown function (DUF300) \\\\ Protein of unknown function (DUF300); LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT3G05940.1); Has 921 Blast hits to 913 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 193; Plants - 245; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).",2e-21,"AN6328.2","hypothetical protein","","","",2e-34,"chlredraft_78039","hypothetical protein",4e-29,"Z28276","Putative protein of unknown function",2e-37,"PHYPADRAFT_23257","hypothetical protein"]
["Contig11739@@KO",0.12137662683852753,0,2.7301378869210327,0,"","","","","","","","","",4e-11,"chlredraft_190138","hypothetical protein","","","","","",""]
["Contig3666",5.2904684384211675,4.718104196660736,1.6527651597421658,7.7262331427533635,"","","","","","","","","",1E-10,"chlredraft_190138","hypothetical protein","","","",8e-11,"PHYPADRAFT_99153","hypothetical protein"]
["TRINITY_DN47534_c0_g1_i1@@W-35D-3@@KO",0,0,2.1138114120541984,0,6e-20,"AT3G49100","Signal recognition particle, SRP9/SRP14 subunit \\\\ Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, signal recognition particle binding; INVOLVED IN: negative regulation of translational elongation, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018), Signal recognition particle, SRP9 subunit (InterPro:IPR008832); Has 222 Blast hits to 222 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 16; Plants - 42; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).","","","","","","",2E-16,"srp9","subunit of the signal recognition particle","","","",2e-20,"PHYPADRAFT_212428","hypothetical protein"]
["TRINITY_DN34076_c0_g1_i1@@W-25D-4@@WT",0,0.49242349625342635,0.19713981100946776,0,1E-14,"AT3G49100","Signal recognition particle, SRP9/SRP14 subunit \\\\ Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, signal recognition particle binding; INVOLVED IN: negative regulation of translational elongation, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018), Signal recognition particle, SRP9 subunit (InterPro:IPR008832); Has 222 Blast hits to 222 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 16; Plants - 42; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).","","","","","","",3e-12,"srp9","subunit of the signal recognition particle","","","",3e-16,"PHYPADRAFT_212428","hypothetical protein"]
["Contig19561@@KO",0.4716348928582784,0.06900628586952778,12.763394621355827,0,1e-48,"AT2G25610","ATPase, F0/V0 complex, subunit C protein \\\\ ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT4G32530.1); Has 2203 Blast hits to 1865 proteins in 426 species: Archae - 105; Bacteria - 196; Metazoa - 767; Fungi - 479; Plants - 333; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).",8e-49,"AN7603.2","hypothetical protein","","","",5e-49,"atpvl2","vacuolar proton-ATPase subunit c'' proteolipid",1e-45,"VMA16","Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain",4e-49,"PHYPADRAFT_188359","hypothetical protein"]
["TRINITY_DN20951_c0_g2_i1@@W-35D-5@@WT",60.81921961597804,61.96735956089433,53.028979906910386,56.26666996594682,6e-27,"AT2G25610","ATPase, F0/V0 complex, subunit C protein \\\\ ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT4G32530.1); Has 2203 Blast hits to 1865 proteins in 426 species: Archae - 105; Bacteria - 196; Metazoa - 767; Fungi - 479; Plants - 333; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).",1e-24,"AN7603.2","hypothetical protein","","","",3E-28,"atpvl2","vacuolar proton-ATPase subunit c'' proteolipid",2e-23,"VMA16","Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain",2e-26,"PHYPADRAFT_132378","hypothetical protein"]
["Contig14806",72.3032784228427,65.66944985631143,62.08278997565101,64.36970606164023,1E-51,"AT2G25610","ATPase, F0/V0 complex, subunit C protein \\\\ ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT4G32530.1); Has 2203 Blast hits to 1865 proteins in 426 species: Archae - 105; Bacteria - 196; Metazoa - 767; Fungi - 479; Plants - 333; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).",2E-41,"AN7603.2","hypothetical protein","","","",2E-52,"atpvl2","vacuolar proton-ATPase subunit c'' proteolipid",2E-41,"VMA16","Subunit c'' of the vacuolar ATPase, which functions in acidification of the vacuole; one of three proteolipid subunits of the V0 domain",7e-52,"PHYPADRAFT_161729","hypothetical protein"]
["Contig7841",97.90071304758611,81.78924541726535,142.5908654130265,138.16011305819524,2e-30,"AVA-P2","ATPase, F0/V0 complex, subunit C protein \\\\ vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2) \\\\ AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).",2e-26,"AN3088.2","VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolipid subunit","","","",4e-32,"atpvl1","vacuolar H(+)-ATPase V0 sector, c/c' subunits",2e-24,"VMA3","Proteolipid subunit of the vacuolar H(+)-ATPase V0 sector (subunit c; dicyclohexylcarbodiimide binding subunit); required for vacuolar acidification and important for copper and iron metal ion homeostasis",2e-31,"PHYPADRAFT_220835","hypothetical protein"]
["Contig3213",4.686317318046157,0.31799134867776124,78.00711082879806,0.18112472407708582,1E-35,"AVA-P2","ATPase, F0/V0 complex, subunit C protein \\\\ vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2) \\\\ AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).",1E-26,"AN3088.2","VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolipid subunit","","","",2E-35,"atpvl1","vacuolar H(+)-ATPase V0 sector, c/c' subunits",3E-28,"VMA11","Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen",1e-33,"PHYPADRAFT_220835","hypothetical protein"]
["TRINITY_DN36994_c0_g1_i3@@W-35D-3@@KO",0,0,2.172205638518275,0,2E-14,"AVA-P2","ATPase, F0/V0 complex, subunit C protein \\\\ vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2) \\\\ AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).",1E-13,"AN4718.2","hypothetical protein","","","",1E-14,"atpvl1","vacuolar H(+)-ATPase V0 sector, c/c' subunits",2E-16,"VMA11","Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen",9e-14,"PHYPADRAFT_220835","hypothetical protein"]
["Contig16943@@KO",0.20279932502973946,0,2.470859971372955,0,1E-14,"AVA-P2","ATPase, F0/V0 complex, subunit C protein \\\\ vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2) \\\\ AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2718 Blast hits to 2491 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 340; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).",9e-14,"AN4718.2","hypothetical protein","","","",8e-15,"atpvl1","vacuolar H(+)-ATPase V0 sector, c/c' subunits",2E-16,"VMA11","Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen",7e-14,"PHYPADRAFT_220835","hypothetical protein"]
["Contig15930",63.09623950498195,44.118112324701954,54.33257958103178,56.335156626049184,5e-33,"AT1G09330","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).",1e-15,"AN3576.2","hypothetical protein","","","",4e-20,"chlredraft_145545","hypothetical protein",3e-19,"TVP23","Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern",5e-39,"PHYPADRAFT_215457","hypothetical protein"]
["Contig20214@@KO",0.025222034797063055,0,2.1274575646772598,0,3e-22,"PIP5K5","phosphatidylinositol- 4-phosphate 5-kinase 5 \\\\ Encodes a protein with phosphatidylinositol-4-phosphate 5-kinase activity that plays a role in pollen tip growth. The enzyme localizes to the apical plasma membrane and adjacent cytosolic region of pollen tubes. Overexpression of this gene leads to increased deposition of pectin in the cell wall at the tip of the pollen tube and causes altered pollen tube morphology. \\\\ phosphatidylinositol- 4-phosphate 5-kinase 5 (PIP5K5); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidyl inositol monophosphate 5 kinase 4 (TAIR:AT3G56960.1); Has 28370 Blast hits to 7831 proteins in 606 species: Archae - 2; Bacteria - 4383; Metazoa - 4412; Fungi - 450; Plants - 2408; Viruses - 2; Other Eukaryotes - 16713 (source: NCBI BLink).",2e-20,"AN2766.2","hypothetical protein","","","",4E-14,"chlredraft_120269","hypothetical protein",6e-21,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",2e-13,"PHYPADRAFT_40660","hypothetical protein"]
["TRINITY_DN13157_c0_g1_i1@@W-35D-3@@KO",0.07821562415406919,0,1.5393985964385515,0,2e-24,"PIP5K3","1-phosphatidylinositol-4-phosphate 5-kinase 3 \\\\ Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth. \\\\ 1-phosphatidylinositol-4-phosphate 5-kinase 3 (PIP5K3); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 1 (TAIR:AT1G21980.1); Has 28139 Blast hits to 7953 proteins in 632 species: Archae - 0; Bacteria - 4176; Metazoa - 4166; Fungi - 427; Plants - 2573; Viruses - 0; Other Eukaryotes - 16797 (source: NCBI BLink).",7e-30,"AN2766.2","hypothetical protein","","","",7e-21,"chlredraft_120269","hypothetical protein",5e-26,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",6e-19,"PHYPADRAFT_40660","hypothetical protein"]
["TRINITY_DN4853_c0_g1_i1@@W-35D-3@@KO",0.0925885807293896,0,1.0413025914859066,0,2E-16,"PIP5K3","1-phosphatidylinositol-4-phosphate 5-kinase 3 \\\\ Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth. \\\\ 1-phosphatidylinositol-4-phosphate 5-kinase 3 (PIP5K3); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 1 (TAIR:AT1G21980.1); Has 28139 Blast hits to 7953 proteins in 632 species: Archae - 0; Bacteria - 4176; Metazoa - 4166; Fungi - 427; Plants - 2573; Viruses - 0; Other Eukaryotes - 16797 (source: NCBI BLink).",2e-18,"AN2766.2","hypothetical protein","","","",9e-11,"chlredraft_120269","hypothetical protein",5e-17,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",2e-11,"PHYPADRAFT_30361","hypothetical protein"]
["Contig14071",53.39497126069949,42.23505222561111,33.64641091509923,37.12544744057456,9e-48,"AT3G07960","Phosphatidylinositol-4-phosphate 5-kinase family protein \\\\ Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol- 4-phosphate 5-kinase 5 (TAIR:AT2G41210.1); Has 28977 Blast hits to 7880 proteins in 615 species: Archae - 0; Bacteria - 4479; Metazoa - 4240; Fungi - 468; Plants - 2497; Viruses - 0; Other Eukaryotes - 17293 (source: NCBI BLink).",1e-31,"AN2766.2","hypothetical protein","","","",8e-37,"chlredraft_120269","hypothetical protein",4e-28,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",2e-42,"PHYPADRAFT_30361","hypothetical protein"]
["TRINITY_DN33594_c0_g1_i1@@W-35D-3@@KO",0.032752423115158226,0,2.256155614886131,0.1310176575523591,2e-29,"PIP5K3","1-phosphatidylinositol-4-phosphate 5-kinase 3 \\\\ Encodes a phosphatidylinositol-4-phosphate 5-kinase. Exclusively expressed in roots. Essential for root hair growth. \\\\ 1-phosphatidylinositol-4-phosphate 5-kinase 3 (PIP5K3); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 1 (TAIR:AT1G21980.1); Has 28139 Blast hits to 7953 proteins in 632 species: Archae - 0; Bacteria - 4176; Metazoa - 4166; Fungi - 427; Plants - 2573; Viruses - 0; Other Eukaryotes - 16797 (source: NCBI BLink).",4E-35,"AN2766.2","hypothetical protein","","","",5e-22,"chlredraft_120269","hypothetical protein",1e-37,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",1e-30,"PHYPADRAFT_40660","hypothetical protein"]
["TRINITY_DN14716_c0_g1_i1@@W-35D-3@@KO",0.06111629870430794,0,2.233880453667227,0,3e-25,"AT1G10900","Phosphatidylinositol-4-phosphate 5-kinase family protein \\\\ Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 26222 Blast hits to 7747 proteins in 608 species: Archae - 0; Bacteria - 3917; Metazoa - 3982; Fungi - 423; Plants - 1715; Viruses - 0; Other Eukaryotes - 16185 (source: NCBI BLink).",4e-29,"AN2766.2","hypothetical protein","","","",1e-23,"chlredraft_120269","hypothetical protein",1e-23,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",6e-25,"PHYPADRAFT_30361","hypothetical protein"]
["Contig22712@@KO",0,0,1.6921167111645983,0,4e-16,"PIP5K9","phosphatidyl inositol monophosphate 5 kinase \\\\ phosphatidyl inositol monophosphate 5 kinase (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 25974 Blast hits to 7709 proteins in 605 species: Archae - 0; Bacteria - 3692; Metazoa - 3999; Fungi - 475; Plants - 1866; Viruses - 0; Other Eukaryotes - 15942 (source: NCBI BLink).",3e-21,"AN2766.2","hypothetical protein","","","",5e-17,"chlredraft_120269","hypothetical protein",3e-17,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",5e-13,"PHYPADRAFT_30361","hypothetical protein"]
["Contig7609@@KO",26.023337240601645,14.2458777737565,18.528498864100147,10.723938585670618,9e-48,"AT3G07960","Phosphatidylinositol-4-phosphate 5-kinase family protein \\\\ Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol- 4-phosphate 5-kinase 5 (TAIR:AT2G41210.1); Has 28977 Blast hits to 7880 proteins in 615 species: Archae - 0; Bacteria - 4479; Metazoa - 4240; Fungi - 468; Plants - 2497; Viruses - 0; Other Eukaryotes - 17293 (source: NCBI BLink).",1e-31,"AN2766.2","hypothetical protein","","","",7e-37,"chlredraft_120269","hypothetical protein",4e-28,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",2e-42,"PHYPADRAFT_30361","hypothetical protein"]
["TRINITY_DN9478_c0_g1_i1@@W-35D-3@@KO",0.3389683633482738,0,2.3032201387950986,0,9e-18,"AT1G60890","Phosphatidylinositol-4-phosphate 5-kinase family protein \\\\ Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1); Has 27589 Blast hits to 7854 proteins in 612 species: Archae - 0; Bacteria - 4141; Metazoa - 4565; Fungi - 466; Plants - 1709; Viruses - 0; Other Eukaryotes - 16708 (source: NCBI BLink).",2e-17,"AN2766.2","hypothetical protein","","","",6e-15,"chlredraft_120269","hypothetical protein",2e-18,"MSS4","Phosphatidylinositol-4-phosphate 5-kinase, involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation",4e-13,"PHYPADRAFT_40660","hypothetical protein"]
["Contig10962",24.89101769213467,9.265481117751584,22.2815137405806,14.79613472781304,7e-17,"CCD8","carotenoid cleavage dioxygenase 8 \\\\ Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip.  Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. \\\\ carotenoid cleavage dioxygenase 8 (CCD8); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 6 (TAIR:AT3G24220.1); Has 2642 Blast hits to 2570 proteins in 479 species: Archae - 17; Bacteria - 769; Metazoa - 368; Fungi - 139; Plants - 827; Viruses - 0; Other Eukaryotes - 522 (source: NCBI BLink).",5e-45,"AN1704.2","hypothetical protein","","","",2E-19,"chlredraft_141185","hypothetical protein","","","",6e-20,"PHYPADRAFT_115616","hypothetical protein"]
["Contig16353@@KO",0.2610328661527369,0,2.715541517194271,0,2e-83,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-53,"AN0679.2","hypothetical protein","","","",1e-29,"chlredraft_113976","hypothetical protein",3e-46,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",5e-82,"PHYPADRAFT_145341","hypothetical protein"]
["Contig3669@@WT",3.3726683010868004,1.287300002896013,2.7829736772453293,2.4441111243904556,8e-28,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-26,"AN0679.2","hypothetical protein","","","",2e-18,"chlredraft_113976","hypothetical protein",2e-26,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",2e-28,"PHYPADRAFT_134361","hypothetical protein"]
["Contig1568",3.745835558473533,1.5968290217353638,4.128259126704665,2.9290206847150935,5e-30,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-29,"AN3905.2","hypothetical protein","","","",2E-19,"chlredraft_113976","hypothetical protein",1E-26,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",9e-31,"PHYPADRAFT_134361","hypothetical protein"]
["Contig7007@@KO",2.836492315650123,1.7005513928624183,2.9501726161656325,1.7834857077563817,5e-30,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-29,"AN3905.2","hypothetical protein","","","",2E-19,"chlredraft_113976","hypothetical protein",1E-26,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",9e-31,"PHYPADRAFT_134361","hypothetical protein"]
["Contig19059@@KO",3.091296968411502,1.4348724017519892,2.285294156037797,1.7056468481355092,4e-30,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-29,"AN3905.2","hypothetical protein","","","",1e-19,"chlredraft_113976","hypothetical protein",1E-26,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",8e-31,"PHYPADRAFT_134361","hypothetical protein"]
["TRINITY_DN16925_c0_g1_i1@@W-35D-5@@WT",2.9142434428474244,2.013127148961086,3.2237901619541627,1.5925795749887093,6e-28,"AT4G08960","phosphotyrosyl phosphatase activator (PTPA) family protein \\\\ phosphotyrosyl phosphatase activator (PTPA) family protein; FUNCTIONS IN: phosphatase activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphotyrosyl phosphatase activator, PTPA (InterPro:IPR004327); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-26,"AN3905.2","hypothetical protein","","","",1e-18,"chlredraft_113976","hypothetical protein",1E-26,"RRD2","Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress",2e-28,"PHYPADRAFT_134361","hypothetical protein"]
["Contig13523",2.2525243771429064,1.942748786860303,2.9999770966748556,3.319711427065384,"","","",1e-11,"AN1498.2","hypothetical protein","","","",5e-14,"chlredraft_177187","hypothetical protein",6e-12,"APA2","Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase II; AP4A phosphorylase involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; APA2 has a paralog, APA1, that arose from the whole genome duplication","","",""]
["Contig1521",32.568662107331,24.080337104625833,29.86706391607992,31.019659245724455,1e-11,"AT2G36930","zinc finger (C2H2 type) family protein \\\\ zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 726 Blast hits to 418 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 225; Plants - 112; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).","","","","","","",4e-12,"chlredraft_183857","hypothetical protein","","","",2E-14,"PHYPADRAFT_161914","hypothetical protein"]
["TRINITY_DN33444_c0_g1_i1@@W-35D-3@@KO",0.1393294398114287,0,15.278018408199975,0,7e-11,"AT1G10390","Nucleoporin autopeptidase \\\\ Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink).",2e-11,"AN8241.2","similar to chitinase","","","",2e-13,"hrp3","hydroxyproline-rich cell wall protein",1e-11,"DAN4","Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth","","",""]
["Contig20822@@KO",0.15098068216499766,0.03313564031844703,13.58410070565587,0.08807741917772922,8e-158,"MYA1","myosin 1 \\\\ Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. \\\\ myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink).",3e-139,"AN8862.2","hypothetical protein","","","",2e-143,"myo1","myosin heavy chain, class XI",2e-142,"MYO2","Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication",3E-152,"PHYPADRAFT_189333","hypothetical protein"]
["TRINITY_DN52172_c0_g1_i1@@W-35D-3@@KO",0,0,0.6522077259306802,0.37116993777681184,7E-39,"XIF","myosin-like protein XIF \\\\ Encodes an novel myosin isoform. \\\\ myosin-like protein XIF (XIF); CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",2e-28,"AN8862.2","hypothetical protein","","","",1E-27,"myo1","myosin heavy chain, class XI",3E-34,"MYO2","Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication",9e-37,"PHYPADRAFT_189333","hypothetical protein"]
["Contig11015@@KO",0.05573894492070276,0.013048525884770495,3.432119411068097,0.01486462232585294,1e-21,"XIG","myosin-like protein XIG \\\\ member of Myosin-like proteins \\\\ myosin-like protein XIG (XIG); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT4G28710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",1e-21,"AN8862.2","hypothetical protein","","","",2e-17,"myo1","myosin heavy chain, class XI",3e-27,"MYO4","Type V myosin motor involved in actin-based transport of cargos; required for mRNA transport, including ASH1 mRNA, and facilitating the growth and movement of ER tubules into the growing bud along with She3p; MYO4 has a paralog, MYO2, that arose from the whole genome duplication",6e-19,"PHYPADRAFT_143138","hypothetical protein"]
["Contig23533@@KO",0.5574935027368998,0,21.34525833124989,0.04372763898631966,6e-144,"MYA1","myosin 1 \\\\ Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. \\\\ myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink).",9e-140,"AN8862.2","hypothetical protein","","","",2e-134,"myo1","myosin heavy chain, class XI",1E-141,"MYO2","Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication",8e-149,"PHYPADRAFT_143138","hypothetical protein"]
["TRINITY_DN43546_c0_g1_i1@@W-35D-3@@KO",0,0,1.2837977155305698,0,2e-36,"XIH","Myosin family protein with Dil domain \\\\ member of Myosin-like proteins \\\\ XIH; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-26,"AN8862.2","hypothetical protein","","","",7e-25,"myo1","myosin heavy chain, class XI",9e-25,"MYO2","Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication",3e-31,"PHYPADRAFT_189333","hypothetical protein"]
["Contig7510",1.7156345918669023,0.08595221402790511,58.61694580274641,0.2403369663342998,9E-176,"MYA2","myosin 2 \\\\ Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. \\\\ myosin 2 (MYA2); CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI B (TAIR:AT1G04160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",0,"AN4706.2","hypothetical protein","","","",1e-160,"myo1","myosin heavy chain, class XI",0,"MYO1","Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively",9e-172,"PHYPADRAFT_189333","hypothetical protein"]
["TRINITY_DN34692_c0_g1_i1@@W-25D-4@@WT",0.13583528458104804,0.7949783716944031,0,0,8e-25,"ATM1","myosin 1 \\\\ member of Myosin-like proteins \\\\ myosin 1 (ATM1); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex, cell plate, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50360.1); Has 7475 Blast hits to 6721 proteins in 784 species: Archae - 2; Bacteria - 30; Metazoa - 4940; Fungi - 735; Plants - 649; Viruses - 1; Other Eukaryotes - 1118 (source: NCBI BLink).",1E-25,"AN4706.2","hypothetical protein","","","",8e-25,"myo1","myosin heavy chain, class XI",9e-26,"MYO1","Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively",1e-28,"PHYPADRAFT_143138","hypothetical protein"]
["TRINITY_DN38954_c4_g1_i1@@W-35D-3@@KO",0.19215723184636066,0.11246035502018385,7.0235975239470685,0,2e-21,"VIIIA","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ member of Myosin-like proteins \\\\ VIIIA; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: plasma membrane, myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 1 (TAIR:AT3G19960.1); Has 6923 Blast hits to 6476 proteins in 764 species: Archae - 0; Bacteria - 9; Metazoa - 4624; Fungi - 710; Plants - 496; Viruses - 0; Other Eukaryotes - 1084 (source: NCBI BLink).",7e-24,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",2e-18,"myo1","myosin heavy chain, class XI",3E-23,"MYO3","One of two type I myosins; localizes to actin cortical patches; deletion of MYO3 has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",1e-21,"PHYPADRAFT_145495","hypothetical protein"]
["TRINITY_DN21534_c0_g1_i1@@W-35D-3@@KO",0,0,2.9464529458749134,0,7e-49,"XIA","myosin XI A \\\\ member of Myosin-like proteins \\\\ myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink).",1E-50,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",7e-42,"myo1","myosin heavy chain, class XI",1E-50,"MYO3","One of two type I myosins; localizes to actin cortical patches; deletion of MYO3 has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",1e-44,"PHYPADRAFT_189333","hypothetical protein"]
["Contig551",1.085179148863271,0.14769836958096366,27.53114294880269,0.1514295523661367,6E-134,"XID","myosin XI D \\\\ member of Myosin-like proteins \\\\ myosin XI D (XID); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI A (TAIR:AT1G04600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",0,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",5e-123,"myo1","myosin heavy chain, class XI",0,"MYO5","One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",4E-136,"PHYPADRAFT_143138","hypothetical protein"]
["TRINITY_DN17892_c0_g1_i1@@W-35D-3@@KO",0,0,1.2690875333734486,0,7e-21,"XIJ","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants \\\\ XIJ; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex, vacuole; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 12832 Blast hits to 9780 proteins in 894 species: Archae - 19; Bacteria - 223; Metazoa - 7630; Fungi - 1066; Plants - 790; Viruses - 83; Other Eukaryotes - 3021 (source: NCBI BLink).",3e-38,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",9e-17,"myo1","myosin heavy chain, class XI",9e-41,"MYO5","One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",1e-18,"PHYPADRAFT_189333","hypothetical protein"]
["TRINITY_DN36278_c1_g1_i1@@W-35D-3@@KO",0.0699458527544057,0.1637437291819303,3.589090167022247,0,2e-69,"XI-I","myosin, putative \\\\ member of Myosin-like proteins \\\\ XI-I; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), ATPase, AAA+ type, core (InterPro:IPR003593), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 21143 Blast hits to 15193 proteins in 1417 species: Archae - 214; Bacteria - 1306; Metazoa - 12806; Fungi - 1491; Plants - 1144; Viruses - 22; Other Eukaryotes - 4160 (source: NCBI BLink).",5e-94,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",5e-60,"myo1","myosin heavy chain, class XI",2e-94,"MYO3","One of two type I myosins; localizes to actin cortical patches; deletion of MYO3 has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",3E-68,"PHYPADRAFT_189333","hypothetical protein"]
["Contig7730",0.22699831317356747,0.08856743908166982,11.080508149360728,0.15134140943693639,7e-143,"XID","myosin XI D \\\\ member of Myosin-like proteins \\\\ myosin XI D (XID); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI A (TAIR:AT1G04600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",0,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",1E-125,"myo1","myosin heavy chain, class XI",0,"MYO5","One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",3e-135,"PHYPADRAFT_143138","hypothetical protein"]
["Contig23531@@KO",0.6318073746977545,0.10784852393642781,18.152732008350227,0.07020508746122768,7e-142,"XIH","Myosin family protein with Dil domain \\\\ member of Myosin-like proteins \\\\ XIH; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",0,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",2E-131,"myo1","myosin heavy chain, class XI",0,"MYO5","One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",2e-138,"PHYPADRAFT_189333","hypothetical protein"]
["TRINITY_DN16951_c0_g1_i1@@W-35D-3@@KO",0,0,1.6921167111645983,0,2E-12,"XIK","Myosin family protein with Dil domain \\\\ Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. \\\\ XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).",7e-11,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",2e-13,"myo1","myosin heavy chain, class XI",3e-12,"MYO2","Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication",5e-11,"PHYPADRAFT_133521","hypothetical protein"]
["Contig24517@@KO",1.350152468357681,0.024693096452825178,22.658217148914854,0.08438965966006384,3E-51,"XI-I","myosin, putative \\\\ member of Myosin-like proteins \\\\ XI-I; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), ATPase, AAA+ type, core (InterPro:IPR003593), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 21143 Blast hits to 15193 proteins in 1417 species: Archae - 214; Bacteria - 1306; Metazoa - 12806; Fungi - 1491; Plants - 1144; Viruses - 22; Other Eukaryotes - 4160 (source: NCBI BLink).",1e-82,"AN1558.2","similar to A56511 myosin I myoA - Emericella nidulans","","","",3e-41,"myo1","myosin heavy chain, class XI",2e-84,"MYO5","One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization",7e-51,"PHYPADRAFT_189333","hypothetical protein"]
["TRINITY_DN22265_c0_g1_i1@@W-35D-3@@KO",0.24938967356175154,0,3.7689160703349613,0,6e-16,"AT1G12650","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).",7e-13,"AN6561.2","hypothetical protein","","","",1E-14,"chlredraft_120296","hypothetical protein","","","",7e-15,"PHYPADRAFT_91107","hypothetical protein"]
["Contig6233",10.728270776211176,5.596647736728598,22.68603370002744,5.259861987198572,7e-30,"CCD1","carotenoid cleavage dioxygenase 1 \\\\ Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial.  The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds. \\\\ carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).",4e-13,"AN1643.2","hypothetical protein","","","",8e-39,"ccd1","carotenoid cleavage dioxygenase","","","",5e-27,"PHYPADRAFT_159406","hypothetical protein"]
["Contig24394@@KO",0.15320491142494166,0.0298878138562775,5.420357361161317,0,5e-106,"CCD1","carotenoid cleavage dioxygenase 1 \\\\ Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial.  The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds. \\\\ carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).",4E-35,"AN1643.2","hypothetical protein","","","",5e-84,"ccd1","carotenoid cleavage dioxygenase","","","",2e-111,"PHYPADRAFT_159406","hypothetical protein"]
["Contig13710",6.458414553200125,2.021752621532699,16.0472489488608,2.2030040096585584,5e-16,"CCD1","carotenoid cleavage dioxygenase 1 \\\\ Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial.  The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds. \\\\ carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).","","","","","","",6e-19,"ccd1","carotenoid cleavage dioxygenase","","","",2E-16,"PHYPADRAFT_108830","hypothetical protein"]
["Contig4761",23.76456914909475,6.0683451313670025,24.027926683584678,21.742306949469555,9e-65,"GPT1","glucose 6-phosphate/phosphate translocator 1 \\\\ Encodes glucose6-Phosphate/phosphate transporter 1.  Essential for pollen maturation and embryo sac development. \\\\ glucose 6-phosphate/phosphate translocator 1 (GPT1); FUNCTIONS IN: antiporter activity, glucose-6-phosphate transmembrane transporter activity; INVOLVED IN: vacuole organization, pollen maturation, embryo sac development, response to nematode, lipid particle organization; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator 2 (TAIR:AT1G61800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",5e-19,"AN4287.2","hypothetical protein","","","",3E-57,"cgl51","sugar phosphate/phosphate translocator-like protein","","","",7e-64,"PHYPADRAFT_128449","hypothetical protein"]
["Contig20113@@KO",0.12491951216246293,0,4.192790812961361,0,"","","",1e-21,"AN7637.2","hypothetical protein","","","",1e-24,"chlredraft_177116","hypothetical protein","","","","","",""]
["Contig11549",162.10853543679556,207.14742027493259,89.10172345322593,141.2662425994962,2e-32,"AT5G66530","Galactose mutarotase-like superfamily protein \\\\ Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",5e-31,"AN1657.2","hypothetical protein","","","",2e-29,"chlredraft_80327","hypothetical protein",1E-22,"YMR099C","Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase), likely involved in carbohydrate metabolism; GFP-fusion protein localizes to both the nucleus and cytoplasm and is induced in response to the DNA-damaging agent MMS",8e-32,"PHYPADRAFT_110541","hypothetical protein"]
["Contig11605@@KO",0,0.4112401630873209,3.786682802281858,0,1e-18,"CKS1","cyclin-dependent kinase-subunit 1 \\\\ catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle \\\\ cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).",4e-16,"AN9424.2","hypothetical protein","","","",2e-18,"cks1","cyclin dependent kinase regulatory subunit",1e-16,"CKS1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",7e-19,"PHYPADRAFT_174548","hypothetical protein"]
["TRINITY_DN43121_c0_g1_i1@@W-35D-3@@KO",0,0,0.43589410806386786,0,2e-21,"CKS2","CDK-subunit 2 \\\\ CDK-subunit 2 (CKS2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity; INVOLVED IN: cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase-subunit 1 (TAIR:AT2G27960.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).",1e-17,"AN9424.2","hypothetical protein","","","",4e-22,"cks1","cyclin dependent kinase regulatory subunit",7e-19,"CKS1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",7e-22,"PHYPADRAFT_161852","hypothetical protein"]
["Contig3146",91.85394346589737,73.68096137635126,82.7323444202696,103.68122808749067,9e-28,"CKS1","cyclin-dependent kinase-subunit 1 \\\\ catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle \\\\ cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).",8e-17,"AN9424.2","hypothetical protein","","","",4e-28,"cks1","cyclin dependent kinase regulatory subunit",1e-18,"CKS1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",2e-29,"PHYPADRAFT_161852","hypothetical protein"]
["Contig6854",1.916378879765056,0.7477093874314926,1.4967125700718804,1.5615888373132532,1e-17,"AGL26","AGAMOUS-like 26 \\\\ Root Specific \\\\ AGAMOUS-like 26 (AGL26); FUNCTIONS IN: RNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, RNA methyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 89 (TAIR:AT5G27580.1); Has 6012 Blast hits to 6012 proteins in 2123 species: Archae - 0; Bacteria - 4418; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink).","","","",6e-17,"cspr","tRNA (cytidine(34)-2'-O)-methyltransferase",6e-14,"chlredraft_111338","hypothetical protein","","","",1E-14,"PHYPADRAFT_126968","hypothetical protein"]
["Contig14476",9.744980861719007,3.3717427798625703,5.600499440063875,9.071351279838092,2e-25,"AGL26","AGAMOUS-like 26 \\\\ Root Specific \\\\ AGAMOUS-like 26 (AGL26); FUNCTIONS IN: RNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, RNA methyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 89 (TAIR:AT5G27580.1); Has 6012 Blast hits to 6012 proteins in 2123 species: Archae - 0; Bacteria - 4418; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink).","","","",2e-20,"cspr","tRNA (cytidine(34)-2'-O)-methyltransferase",3e-19,"chlredraft_111338","hypothetical protein","","","",3E-23,"PHYPADRAFT_114578","hypothetical protein"]
["Contig19338@@KO",0.4049668764612554,0,1.138620590690197,0,1e-21,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-30,"AN3146.2","hypothetical protein","","","",6e-24,"chlredraft_60708","hypothetical protein",3e-27,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",2E-19,"PHYPADRAFT_113743","hypothetical protein"]
["Contig15526",8.233261486398028,2.3898133518588924,7.155617808159564,4.6724462844264405,4e-94,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4e-89,"AN3146.2","hypothetical protein","","","",5E-80,"chlredraft_60708","hypothetical protein",2E-79,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",5e-94,"PHYPADRAFT_113743","hypothetical protein"]
["TRINITY_DN22480_c0_g1_i2@@W-35D-5@@WT",6.943761483532021,1.9650655202392004,6.270374717850657,4.649324674504178,3e-94,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4e-89,"AN3146.2","hypothetical protein","","","",5E-80,"chlredraft_60708","hypothetical protein",2E-79,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",5e-94,"PHYPADRAFT_113743","hypothetical protein"]
["Contig14199@@KO",0,0,1.2761774078615684,0,1e-24,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",5e-27,"AN3146.2","hypothetical protein","","","",1e-18,"chlredraft_60708","hypothetical protein",4e-25,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",3E-28,"PHYPADRAFT_113743","hypothetical protein"]
["TRINITY_DN18532_c0_g1_i1@@W-35D-3@@KO",0,0,0.8568775161396175,0,1e-63,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1E-54,"AN3146.2","hypothetical protein","","","",1E-53,"chlredraft_60708","hypothetical protein",4e-59,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",3e-67,"PHYPADRAFT_113743","hypothetical protein"]
["TRINITY_DN7431_c0_g1_i1@@W-35D-3@@KO",0.049072996354874665,0,2.207608665075444,0,3E-24,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1E-22,"AN3146.2","hypothetical protein","","","",9e-24,"chlredraft_60708","hypothetical protein",3e-22,"SPF1","P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1",8e-47,"PHYPADRAFT_113743","hypothetical protein"]
["TRINITY_DN16003_c0_g1_i1@@W-35D-3@@KO",0.07062991977400869,0,2.3830298915178694,0,3E-28,"PDR2","phosphate deficiency response 2 \\\\ A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots. \\\\ phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-58,"AN8864.2","hypothetical protein","","","",3e-26,"chlredraft_60708","hypothetical protein",3e-62,"YPK9","Vacuolar protein with a possible role in sequestering heavy metals; has similarity to the type V P-type ATPase Spf1p; homolog of human ATP13A2 (PARK9), mutations in which are associated with Parkinson disease and Kufor-Rakeb syndrome",2E-35,"PHYPADRAFT_229474","hypothetical protein"]
["Contig9412@@WT",19.503678218079315,17.915991071620486,16.91410190617139,22.460146421264984,1E-135,"emb1027","Arginyl-tRNA synthetase, class Ic \\\\ embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).",6e-43,"AN6368.2","hypothetical protein",9e-29,"args","arginine--tRNA ligase",3E-131,"chlredraft_119290","arginine-tRNA ligase",6e-50,"RRS1","Essential protein that binds ribosomal protein L11; required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; localizes to the nucleolus and in foci along nuclear periphery; cooperates with Ebp2p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; mouse homolog shows altered expression in Huntington's disease model mice",7e-127,"PHYPADRAFT_122270","hypothetical protein"]
["TRINITY_DN27684_c0_g1_i1@@W-25D-2@@KO",18.944915550917706,15.591189777147068,14.862007748123059,20.2531139141266,1E-135,"emb1027","Arginyl-tRNA synthetase, class Ic \\\\ embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).",6e-43,"AN6368.2","hypothetical protein",5e-29,"args","arginine--tRNA ligase",2E-131,"chlredraft_119290","arginine-tRNA ligase",6e-50,"RRS1","Essential protein that binds ribosomal protein L11; required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; localizes to the nucleolus and in foci along nuclear periphery; cooperates with Ebp2p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; mouse homolog shows altered expression in Huntington's disease model mice",2e-127,"PHYPADRAFT_122270","hypothetical protein"]
["Contig19815@@KO",19.777551361899057,17.824852306010225,17.33407925599989,22.31989622720009,1E-135,"emb1027","Arginyl-tRNA synthetase, class Ic \\\\ embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).",6e-43,"AN6368.2","hypothetical protein",9e-29,"args","arginine--tRNA ligase",3E-131,"chlredraft_119290","arginine-tRNA ligase",7e-50,"RRS1","Essential protein that binds ribosomal protein L11; required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; localizes to the nucleolus and in foci along nuclear periphery; cooperates with Ebp2p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; mouse homolog shows altered expression in Huntington's disease model mice",7e-127,"PHYPADRAFT_122270","hypothetical protein"]
["TRINITY_DN11600_c1_g1_i1@@W-35D-3@@KO",0,0,0.48635689901736956,0,5e-23,"emb1027","Arginyl-tRNA synthetase, class Ic \\\\ embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).","","","","","","",3E-23,"chlredraft_119290","arginine-tRNA ligase",1e-11,"MSR1","Mitochondrial arginyl-tRNA synthetase; mutations in human ortholog are associated with pontocerebellar hypoplasia type 6",3e-22,"PHYPADRAFT_122270","hypothetical protein"]
["TRINITY_DN11600_c0_g1_i1@@W-35D-3@@KO",0,0,1.4166558512075706,0,7e-11,"emb1027","Arginyl-tRNA synthetase, class Ic \\\\ embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink).","","","","","","",2e-13,"chlredraft_119290","arginine-tRNA ligase","","","",1E-10,"PHYPADRAFT_122270","hypothetical protein"]
["TRINITY_DN48670_c0_g1_i1@@W-35D-3@@KO",0,0,0.6061313592231397,0,6e-29,"AT1G66530","Arginyl-tRNA synthetase, class Ic \\\\ Arginyl-tRNA synthetase, class Ic; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT4G26300.1); Has 9450 Blast hits to 9344 proteins in 2861 species: Archae - 249; Bacteria - 5610; Metazoa - 270; Fungi - 189; Plants - 83; Viruses - 3; Other Eukaryotes - 3046 (source: NCBI BLink).","","","","","","",5e-26,"chlredraft_119290","arginine-tRNA ligase","","","",2e-22,"PHYPADRAFT_122270","hypothetical protein"]
["Contig13361",8.48493379276146,9.198775147749608,10.532098632719562,50.7543604617742,3E-34,"AT4G26180","Mitochondrial substrate carrier family protein \\\\ Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G14560.1); Has 27152 Blast hits to 14144 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 12042; Fungi - 7753; Plants - 4485; Viruses - 3; Other Eukaryotes - 2869 (source: NCBI BLink).",3e-29,"AN5801.2","hypothetical protein","","","",7E-39,"chlredraft_123309","hypothetical protein",4e-26,"YPR011C","Putative transporter, member of the mitochondrial carrier family; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies",6e-31,"PHYPADRAFT_152223","hypothetical protein"]
["Contig12692",117.86836309400493,67.27873875675854,114.2090872795279,90.97057225136129,0,"AT1G63770","Peptidase M1 family protein \\\\ Peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: aminopeptidase M1 (TAIR:AT4G33090.1); Has 7682 Blast hits to 7653 proteins in 1759 species: Archae - 112; Bacteria - 3674; Metazoa - 1678; Fungi - 451; Plants - 221; Viruses - 0; Other Eukaryotes - 1546 (source: NCBI BLink).",1E-26,"AN1638.2","similar to aminopeptidase","","","",0,"chlredraft_132291","hypothetical protein",3e-25,"AAP1","Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication",0,"PHYPADRAFT_138701","hypothetical protein"]
["TRINITY_DN29110_c0_g1_i1@@W-35D-3@@KO",0.1532500646555414,0,2.208279633668388,0,"","","","","","","","","",1e-16,"chlredraft_132291","hypothetical protein",3e-12,"APE2","Aminopeptidase yscII; may have a role in obtaining leucine from dipeptide substrates; APE2 has a paralog, AAP1, that arose from the whole genome duplication",3e-17,"PHYPADRAFT_138701","hypothetical protein"]
["Contig21159@@KO",0.2502297735208142,0,5.0128346842777995,0.027804998546963607,3e-139,"MTHFR2","methylenetetrahydrofolate reductase 2 \\\\ methylenetetrahydrofolate reductase MTHFR2 mRNA, complete \\\\ methylenetetrahydrofolate reductase 2 (MTHFR2); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: oxidation reduction, methionine metabolic process; EXPRESSED IN: male gametophyte, guard cell, cultured cell, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: methylenetetrahydrofolate reductase 1 (TAIR:AT3G59970.3); Has 4605 Blast hits to 4574 proteins in 1845 species: Archae - 16; Bacteria - 3444; Metazoa - 135; Fungi - 300; Plants - 75; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).",2e-127,"AN5883.2","hypothetical protein","","","",2e-138,"chlredraft_111330","5,10-methylenetetrahydrofolate reductase",1e-115,"MET13","Major isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway",3e-144,"PHYPADRAFT_161370","hypothetical protein"]
["Contig10736",70.56607817430184,35.12803319013795,93.02129600175519,59.36235373487322,1e-178,"MTHFR2","methylenetetrahydrofolate reductase 2 \\\\ methylenetetrahydrofolate reductase MTHFR2 mRNA, complete \\\\ methylenetetrahydrofolate reductase 2 (MTHFR2); FUNCTIONS IN: methylenetetrahydrofolate reductase (NADPH) activity; INVOLVED IN: oxidation reduction, methionine metabolic process; EXPRESSED IN: male gametophyte, guard cell, cultured cell, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Methylenetetrahydrofolate reductase (InterPro:IPR003171), Eukaryotic-type methylenetetrahydrofolate reductase (InterPro:IPR004621); BEST Arabidopsis thaliana protein match is: methylenetetrahydrofolate reductase 1 (TAIR:AT3G59970.3); Has 4605 Blast hits to 4574 proteins in 1845 species: Archae - 16; Bacteria - 3444; Metazoa - 135; Fungi - 300; Plants - 75; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).",2e-151,"AN5883.2","hypothetical protein","","","",2e-168,"chlredraft_111330","5,10-methylenetetrahydrofolate reductase",3E-131,"MET13","Major isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway",0,"PHYPADRAFT_228287","hypothetical protein"]
["TRINITY_DN53273_c0_g1_i1@@W-35D-3@@KO",0,0,1.3477035752638393,0,2e-30,"AT3G04970","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5080 Blast hits to 5078 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2181; Fungi - 755; Plants - 829; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).",2e-25,"AN1907.2","hypothetical protein","","","",3e-17,"chlredraft_132294","hypothetical protein",1e-18,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",7e-28,"PHYPADRAFT_129688","hypothetical protein"]
["TRINITY_DN38368_c1_g1_i3@@W-35D-3@@KO",0.8956304836697252,0.34944620157354367,4.137025502492975,0.3980821937639101,5e-31,"AT3G26935","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G41060.1); Has 5153 Blast hits to 5144 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 770; Plants - 850; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).",4e-23,"AN4763.2","hypothetical protein","","","",1e-23,"chlredraft_132294","hypothetical protein",6e-22,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",2e-30,"PHYPADRAFT_118918","hypothetical protein"]
["Contig15361",0.5679089879600829,0.6647394510367355,1.7165115785601561,1.1358870310732052,8e-21,"AT3G26935","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G41060.1); Has 5153 Blast hits to 5144 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 770; Plants - 850; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).",7e-15,"AN4763.2","hypothetical protein","","","",3e-16,"chlredraft_132294","hypothetical protein",3e-14,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",3e-20,"PHYPADRAFT_118918","hypothetical protein"]
["Contig3382@@WT",7.0005480923899395,5.263051257050909,6.223877558306568,5.202304574880742,5e-44,"AT3G56930","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink).",2e-22,"AN4763.2","hypothetical protein","","","",3e-38,"chlredraft_132294","hypothetical protein",4e-26,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",2e-42,"PHYPADRAFT_56441","hypothetical protein"]
["Contig2718",8.974992766706041,7.282531068508244,8.553904804781457,5.475118172139563,1e-43,"AT3G56930","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink).",4e-22,"AN4763.2","hypothetical protein","","","",8e-38,"chlredraft_132294","hypothetical protein",9e-26,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",4e-42,"PHYPADRAFT_56441","hypothetical protein"]
["Contig2929",8.073028271747624,6.059122402892831,6.1815635451081485,4.746391628472659,6e-44,"AT3G56930","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink).",2e-22,"AN4763.2","hypothetical protein","","","",4e-38,"chlredraft_132294","hypothetical protein",5e-26,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",2e-42,"PHYPADRAFT_56441","hypothetical protein"]
["Contig12154@@WT",8.719134395028615,6.847004870763752,7.523824673181671,5.571408841009848,1e-43,"AT3G56930","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G05070.1); Has 5165 Blast hits to 5156 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 2209; Fungi - 768; Plants - 846; Viruses - 2; Other Eukaryotes - 1340 (source: NCBI BLink).",4e-22,"AN4763.2","hypothetical protein","","","",8e-38,"chlredraft_132294","hypothetical protein",9e-26,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",4e-42,"PHYPADRAFT_56441","hypothetical protein"]
["Contig8844",0.8351867894365347,0.11501047644921296,3.2461014459075965,0.7205971165379751,2e-31,"AT3G26935","DHHC-type zinc finger family protein \\\\ DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G41060.1); Has 5153 Blast hits to 5144 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 770; Plants - 850; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).",4e-23,"AN4763.2","hypothetical protein","","","",2e-24,"chlredraft_132294","hypothetical protein",2e-22,"ERF2","Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole",8e-31,"PHYPADRAFT_118918","hypothetical protein"]
["Contig6228",9.39931987617372,10.143924022820583,6.731531145642522,6.826252322672751,5e-20,"ULP1B","UB-like protease 1B \\\\ UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).",8e-11,"AN2689.2","hypothetical protein","","","",6e-12,"chlredraft_123346","hypothetical protein",7e-11,"ULP1","Protease that specifically cleaves Smt3p protein conjugates; required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase; sequestered to the nucleolus under stress conditions",9e-15,"PHYPADRAFT_143972","hypothetical protein"]
["Contig7140",4.392672447754537,1.153264692314988,3.203078340982347,1.4232576612935572,5e-18,"ULP1A","UB-like protease 1A \\\\ Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity. \\\\ UB-like protease 1A (ULP1A); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1394 Blast hits to 1393 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 593; Fungi - 272; Plants - 373; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).",2E-14,"AN2689.2","hypothetical protein","","","",9e-11,"chlredraft_123346","hypothetical protein",3E-11,"ULP1","Protease that specifically cleaves Smt3p protein conjugates; required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase; sequestered to the nucleolus under stress conditions",7e-17,"PHYPADRAFT_143972","hypothetical protein"]
["Contig3360",3.5108642210905425,0.5190920608692835,2.2859811262129837,0.8130916717950883,6e-18,"ULP1A","UB-like protease 1A \\\\ Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity. \\\\ UB-like protease 1A (ULP1A); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1394 Blast hits to 1393 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 593; Fungi - 272; Plants - 373; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).",2E-14,"AN2689.2","hypothetical protein","","","",1E-10,"chlredraft_123346","hypothetical protein",3E-11,"ULP1","Protease that specifically cleaves Smt3p protein conjugates; required for cell cycle progression; associates with nucleoporins and may interact with septin rings during telophase; sequestered to the nucleolus under stress conditions",7e-17,"PHYPADRAFT_143972","hypothetical protein"]
["Contig15163",16.87798891483556,27.39765193663595,11.523768048578548,18.571752958046908,2E-35,"AT1G52510","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G12830.1); Has 5012 Blast hits to 5012 proteins in 950 species: Archae - 40; Bacteria - 3506; Metazoa - 96; Fungi - 96; Plants - 325; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).","","","","","","",6e-13,"cgl76","hypothetical protein","","","",5e-33,"PHYPADRAFT_177874","hypothetical protein"]
["Contig12803",109.98431734896158,72.22562497471162,101.69547542539796,89.59496618693294,2e-123,"ckl12","casein kinase I-like 12 \\\\ casein kinase I-like 12 (ckl12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-116,"AN4563.2","hypothetical protein",1E-10,"prkc","serine/threonine protein kinase",5e-129,"ck1","ser/thr kinase",5e-115,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",6e-128,"PHYPADRAFT_141762","hypothetical protein"]
["TRINITY_DN43182_c0_g1_i1@@W-35D-3@@KO",0.04664311709510692,0,2.0982975793989422,0,6e-92,"ADK1","dual specificity kinase 1 \\\\ Phosphorylates serine, threonine, and tyrosine \\\\ dual specificity kinase 1 (ADK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 7 (TAIR:AT5G44100.1); Has 64744 Blast hits to 58833 proteins in 2294 species: Archae - 36; Bacteria - 9751; Metazoa - 22487; Fungi - 6187; Plants - 10395; Viruses - 402; Other Eukaryotes - 15486 (source: NCBI BLink).",4E-90,"AN4563.2","hypothetical protein",2e-11,"prkc","serine/threonine protein kinase",1e-92,"ck1","ser/thr kinase",1e-81,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",2E-92,"PHYPADRAFT_141762","hypothetical protein"]
["Contig11894@@KO",0.513499475986879,0.09246968115606731,5.719570432997567,0.05266981493216989,2e-114,"CK1","casein kinase 1 \\\\ Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization. \\\\ casein kinase 1 (CK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 12 (TAIR:AT5G57015.1); Has 62578 Blast hits to 62222 proteins in 2324 species: Archae - 33; Bacteria - 9966; Metazoa - 23829; Fungi - 6469; Plants - 10923; Viruses - 370; Other Eukaryotes - 10988 (source: NCBI BLink).",1e-109,"AN4563.2","hypothetical protein",3E-11,"prkc","serine/threonine protein kinase",5e-115,"ck1","ser/thr kinase",3e-99,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",1e-116,"PHYPADRAFT_141762","hypothetical protein"]
["TRINITY_DN34477_c0_g1_i1@@W-35D-3@@KO",0.09461016546147234,0.07382768575560832,3.85713940274201,0,2e-40,"ckl7","casein kinase I-like 7 \\\\ casein kinase I-like 7 (ckl7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: dual specificity kinase 1 (TAIR:AT1G03930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8e-34,"AN4563.2","hypothetical protein","","","",1E-41,"ck1","ser/thr kinase",2e-36,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",1e-39,"PHYPADRAFT_141747","hypothetical protein"]
["TRINITY_DN9056_c0_g1_i1@@W-35D-3@@KO",0,0,1.5464377890113548,0,4e-32,"ckl10","casein kinase I-like 10 \\\\ casein kinase I-like 10 (ckl10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I (TAIR:AT4G14340.1); Has 56550 Blast hits to 56234 proteins in 2232 species: Archae - 39; Bacteria - 9117; Metazoa - 21673; Fungi - 6267; Plants - 8804; Viruses - 331; Other Eukaryotes - 10319 (source: NCBI BLink).",5e-30,"AN4563.2","hypothetical protein","","","",3e-31,"ck1","ser/thr kinase",8e-28,"YCK1","Palmitoylated plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; YCK1 has a paralog, YCK2, that arose from the whole genome duplication",3e-31,"PHYPADRAFT_154549","hypothetical protein"]
["TRINITY_DN44178_c0_g1_i1@@W-35D-3@@KO",0,0,1.1493622943759536,0,1e-39,"CKL2","casein kinase 1-like protein 2 \\\\ Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. \\\\ casein kinase 1-like protein 2 (CKL2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 69362 Blast hits to 63919 proteins in 2309 species: Archae - 34; Bacteria - 10202; Metazoa - 23661; Fungi - 6612; Plants - 12027; Viruses - 386; Other Eukaryotes - 16440 (source: NCBI BLink).",3e-39,"AN4563.2","hypothetical protein","","","",3e-42,"ck1","ser/thr kinase",8e-40,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",7E-39,"PHYPADRAFT_154549","hypothetical protein"]
["TRINITY_DN42131_c0_g1_i1@@W-35D-3@@KO",0,0,0.5957574728794673,0,5e-31,"ckl5","casein kinase I-like 5 \\\\ casein kinase I-like 5 (ckl5); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 70101 Blast hits to 69707 proteins in 2404 species: Archae - 48; Bacteria - 11303; Metazoa - 26265; Fungi - 7230; Plants - 12439; Viruses - 411; Other Eukaryotes - 12405 (source: NCBI BLink).",2e-27,"AN4563.2","hypothetical protein","","","",2e-31,"ck1","ser/thr kinase",3e-29,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",2e-30,"PHYPADRAFT_141762","hypothetical protein"]
["TRINITY_DN50687_c0_g1_i1@@W-35D-3@@KO",0,0,0.3703112559387571,0,2e-33,"CK1","casein kinase 1 \\\\ Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization. \\\\ casein kinase 1 (CK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 12 (TAIR:AT5G57015.1); Has 62578 Blast hits to 62222 proteins in 2324 species: Archae - 33; Bacteria - 9966; Metazoa - 23829; Fungi - 6469; Plants - 10923; Viruses - 370; Other Eukaryotes - 10988 (source: NCBI BLink).",4e-26,"AN4563.2","hypothetical protein","","","",2e-32,"ck1","ser/thr kinase",6e-31,"HRR25","Protein kinase involved in regulating diverse events including vesicular trafficking, DNA repair, and chromosome segregation; binds the CTD of RNA pol II; homolog of mammalian casein kinase 1delta (CK1delta)",1e-34,"PHYPADRAFT_141762","hypothetical protein"]
["Contig13399",16.97913901068662,5.881123483842401,8.96327956397785,5.267318445251741,"","","",8e-129,"AN6730.2","UAPC_EMENI PURINE PERMEASE",9e-27,"pucj","uric acid permease PucJ",2e-102,"uapa2","uric acid-xanthine permease","","","",5e-102,"PHYPADRAFT_31105","hypothetical protein"]
["Contig15401",2.3860437988693812,1.0802620387938802,1.5505942225944682,1.8909421193647757,4e-27,"EMB1586","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ Encodes a DEAD-box RNA helicase that  localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata. \\\\ embryo defective 1586 (EMB1586); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: embryo, root, flower, shoot meristem; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753; Bacteria - 18819; Metazoa - 5837; Fungi - 4441; Plants - 2445; Viruses - 12; Other Eukaryotes - 6526 (source: NCBI BLink).",1e-19,"AN7424.2","hypothetical protein",5e-28,"csha","ATP-dependent RNA helicase",1e-19,"chlredraft_136620","hypothetical protein",1e-17,"DED1","ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs; mutations in human DEAD-box DBY are a frequent cause of male infertility",2e-29,"PHYPADRAFT_22197","hypothetical protein"]
["Contig15754",0.7660245571247082,0.8069709741194925,1.902509537361257,2.3492847976786893,1e-124,"CRD1","dicarboxylate diiron protein, putative (Crd1) \\\\ Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots.  Has a consensus carboxylate-bridged di-iron binding site. \\\\ COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251); Has 877 Blast hits to 876 proteins in 230 species: Archae - 0; Bacteria - 301; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).","","","","","","",5e-120,"cth1","copper target 1 protein","","","",7E-128,"PHYPADRAFT_146121","hypothetical protein"]
["Contig4881",1.5725125081943103,1.2270875834057156,3.5206944474231157,2.718088097205192,1e-20,"AT3G19100","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT1G49580.1); Has 120241 Blast hits to 118384 proteins in 3609 species: Archae - 140; Bacteria - 14458; Metazoa - 44881; Fungi - 12679; Plants - 26503; Viruses - 512; Other Eukaryotes - 21068 (source: NCBI BLink).",1e-17,"AN2412.2","KCC1_EMENI Calcium/calmodulin-dependent protein kinase (CMPK)","","","",7e-19,"chlredraft_112697","hypothetical protein",7e-13,"RAD53","Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p; also interacts with ARS1 and plays a role in initiation of DNA replication",3e-19,"PHYPADRAFT_110944","hypothetical protein"]
["TRINITY_DN35608_c1_g1_i1@@W-35D-3@@KO",0.05164655039493961,0,2.178171690176122,0,5e-33,"AT1G35710","Protein kinase family protein with leucine-rich repeat domain \\\\ Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1); Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178; Bacteria - 29187; Metazoa - 106993; Fungi - 12531; Plants - 120860; Viruses - 430; Other Eukaryotes - 33895 (source: NCBI BLink).","","","","","","",7e-17,"chlredraft_110032","hypothetical protein","","","",6e-28,"ERL1c","ERL1c AtERECTA-like receptor S/T protein kinase protein"]
["TRINITY_DN43719_c0_g1_i1@@W-35D-3@@KO",0,0,0.6694088088123685,0,5e-27,"AT1G35710","Protein kinase family protein with leucine-rich repeat domain \\\\ Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1); Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178; Bacteria - 29187; Metazoa - 106993; Fungi - 12531; Plants - 120860; Viruses - 430; Other Eukaryotes - 33895 (source: NCBI BLink).","","","","","","",4e-11,"chlredraft_110032","hypothetical protein","","","",1E-22,"PHYPADRAFT_10720","hypothetical protein"]
["TRINITY_DN27742_c1_g2_i1@@W-35D-3@@KO",0,0,1.3727594727194488,0,3e-26,"AT2G33170","Leucine-rich repeat receptor-like protein kinase family protein \\\\ Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 252347 Blast hits to 139850 proteins in 4875 species: Archae - 176; Bacteria - 22560; Metazoa - 76410; Fungi - 11433; Plants - 110453; Viruses - 462; Other Eukaryotes - 30853 (source: NCBI BLink).","","","","","","",1e-12,"chlredraft_110032","hypothetical protein","","","",4e-23,"PHYPADRAFT_139883","hypothetical protein"]
["TRINITY_DN34728_c0_g3_i1@@W-35D-3@@KO",0,0,1.122140555824944,0,1E-26,"AT1G17230","Leucine-rich receptor-like protein kinase family protein \\\\ Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-13,"chlredraft_110032","hypothetical protein","","","",2e-26,"PHYPADRAFT_151593","hypothetical protein"]
["TRINITY_DN45589_c0_g1_i1@@W-35D-3@@KO",0,0,0.9407907583308963,0,6E-37,"AT3G24240","Leucine-rich repeat receptor-like protein kinase family protein \\\\ Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G48940.1); Has 246558 Blast hits to 135557 proteins in 3810 species: Archae - 176; Bacteria - 24262; Metazoa - 71588; Fungi - 10499; Plants - 111580; Viruses - 361; Other Eukaryotes - 28092 (source: NCBI BLink).","","","","","","",1e-19,"chlredraft_110032","hypothetical protein","","","",4e-34,"PHYPADRAFT_139883","hypothetical protein"]
["Contig12621@@KO",0.7162224096091625,0.10479260354153495,1.7620388893118957,0,4e-30,"AT2G33170","Leucine-rich repeat receptor-like protein kinase family protein \\\\ Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 252347 Blast hits to 139850 proteins in 4875 species: Archae - 176; Bacteria - 22560; Metazoa - 76410; Fungi - 11433; Plants - 110453; Viruses - 462; Other Eukaryotes - 30853 (source: NCBI BLink).","","","","","","",2e-15,"chlredraft_110032","hypothetical protein","","","",4e-30,"ERL1a","ERL1a AtERECTA-like receptor S/T protein kinase protein"]
["TRINITY_DN56753_c0_g1_i1@@W-35D-3@@KO",0,0,0.7398728939505126,0,1e-66,"AT5G61140","U5 small nuclear ribonucleoprotein helicase \\\\ Encodes a predicted protein with 30% identity with MER3/RCK. \\\\ U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).",5e-55,"AN2482.2","hypothetical protein","","","",4e-56,"chlredraft_171830","hypothetical protein",1E-53,"SLH1","Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses",3e-67,"PHYPADRAFT_130836","hypothetical protein"]
["Contig10394@@KO",4.669806011524401,1.107732483695051,2.3337033911228184,2.048012857528982,5e-24,"AT5G61140","U5 small nuclear ribonucleoprotein helicase \\\\ Encodes a predicted protein with 30% identity with MER3/RCK. \\\\ U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).",6e-26,"AN2482.2","hypothetical protein","","","",8e-17,"chlredraft_171830","hypothetical protein",3e-21,"SLH1","Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses",2e-24,"PHYPADRAFT_130836","hypothetical protein"]
["Contig2700@@WT",4.814606197928258,1.6373450937735927,2.1951784361054245,2.34238325596988,5e-24,"AT5G61140","U5 small nuclear ribonucleoprotein helicase \\\\ Encodes a predicted protein with 30% identity with MER3/RCK. \\\\ U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).",6e-26,"AN2482.2","hypothetical protein","","","",8e-17,"chlredraft_171830","hypothetical protein",3e-21,"SLH1","Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses",1e-24,"PHYPADRAFT_130836","hypothetical protein"]
["Contig22838@@KO",0.8534395946193333,0.04540700099740637,4.417378988143213,0.05172675647322326,4e-30,"AT3G49080","Ribosomal protein S5 domain 2-like superfamily protein \\\\ Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9, conserved site (InterPro:IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: ribosomal protein S9 (TAIR:AT1G74970.1); Has 8295 Blast hits to 8282 proteins in 2846 species: Archae - 200; Bacteria - 5387; Metazoa - 167; Fungi - 129; Plants - 162; Viruses - 18; Other Eukaryotes - 2232 (source: NCBI BLink).",3e-19,"AN6564.2","hypothetical protein",3e-22,"rpsi","30S ribosomal protein S9",5e-16,"mrps9","mitochondrial ribosomal protein S9",6e-26,"MRPS9","Mitochondrial ribosomal protein of the small subunit",2e-28,"PHYPADRAFT_151456","hypothetical protein"]
["Contig12699@@KO",0.06755460812237868,0,4.992686456460713,0.03860498016520515,8e-89,"ATPI4K ALPHA","Phosphatidylinositol 3- and 4-kinase family protein \\\\ Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots. \\\\ ATPI4K ALPHA; FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity, inositol or phosphatidylinositol kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: shoot, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphoinositide 3-kinase, accessory (PIK) domain (InterPro:IPR001263), Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G51040.1); Has 2472 Blast hits to 2328 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 1180; Fungi - 474; Plants - 245; Viruses - 4; Other Eukaryotes - 569 (source: NCBI BLink).",1e-77,"AN4278.2","hypothetical protein","","","",9e-56,"pik1","phosphatidylinositol 4-kinase",4E-73,"STT4","Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization",7e-43,"PHYPADRAFT_147576","hypothetical protein"]
["Contig821",93.93058707821253,137.3093898146056,78.3134775980817,130.49657591813946,2E-45,"YKT61","SNARE-like superfamily protein \\\\ member of YKT6 Gene Family \\\\ YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).",1E-41,"AN8488.2","hypothetical protein","","","",6e-50,"ykt6","R-SNARE protein, YKT6-family",3e-48,"YKT6","Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus",3e-45,"YKT6A1","R-SNARE, YKT6-family"]
["Contig11369@@KO",0.3102490867400071,0,4.434234245486226,0,3E-28,"YKT61","SNARE-like superfamily protein \\\\ member of YKT6 Gene Family \\\\ YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).",3E-24,"AN8488.2","hypothetical protein","","","",1e-32,"ykt6","R-SNARE protein, YKT6-family",3E-28,"YKT6","Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus",5e-27,"YKT6A1","R-SNARE, YKT6-family"]
["TRINITY_DN50942_c0_g1_i1@@W-35D-3@@KO",136.79407271282935,122.19526938259257,128.61128307442434,121.03915118754445,2E-45,"YKT61","SNARE-like superfamily protein \\\\ member of YKT6 Gene Family \\\\ YKT61; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Synaptobrevin family protein (TAIR:AT5G58180.2); Has 1443 Blast hits to 1443 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 389; Fungi - 302; Plants - 452; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).",1E-41,"AN8488.2","hypothetical protein","","","",5e-50,"ykt6","R-SNARE protein, YKT6-family",2e-48,"YKT6","Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus",2E-45,"YKT6A1","R-SNARE, YKT6-family"]
["TRINITY_DN56400_c0_g1_i1@@W-35D-3@@KO",0.19651453869094934,1.0350942880429166,1.2431877877943986,0,"","","","","","","","","",2e-11,"chlredraft_168204","hypothetical protein",6e-12,"YSP3","Putative precursor to the subtilisin-like protease III","","",""]
["TRINITY_DN13372_c0_g1_i1@@W-35D-3@@KO",0.14114480710538868,0.16521048897101928,0.9921205472626309,0.37640903570417183,"","","",2e-29,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",2e-29,"chlredraft_144252","hypothetical protein",1E-26,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",6e-19,"PHYPADRAFT_102741","hypothetical protein"]
["TRINITY_DN45628_c0_g1_i1@@W-35D-3@@KO",0,0,0.6140746129226364,0.11648948988022254,"","","",4E-50,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",4e-49,"chlredraft_144252","hypothetical protein",2e-48,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",1e-17,"PHYPADRAFT_102741","hypothetical protein"]
["Contig16551@@KO",17.56053643280677,11.735405585060125,6.593583273951437,7.343393317365536,"","","",3e-77,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",7e-85,"chlredraft_144252","hypothetical protein",3e-77,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",1e-29,"PHYPADRAFT_102741","hypothetical protein"]
["Contig4529@@WT",20.200906665364084,12.560283282973598,8.157279617029337,7.9491255672982035,"","","",3e-77,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",4e-80,"chlredraft_144252","hypothetical protein",3e-77,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",1e-29,"PHYPADRAFT_102741","hypothetical protein"]
["Contig8687",11.020717077338672,6.303305389902963,4.694890296872874,6.568301410124917,"","","",4e-38,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",2e-40,"chlredraft_144252","hypothetical protein",2e-36,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",7e-16,"PHYPADRAFT_102741","hypothetical protein"]
["TRINITY_DN945_c0_g1_i1@@W-35D-3@@KO",0,0,0.8879912769959991,0.1684512739958903,"","","",4e-29,"AN2936.2","similar to T30525 alpha-mannosidase (EC 3.2.1.24) - Emericella nidulans","","","",1e-24,"chlredraft_144252","hypothetical protein",1E-25,"Z72678","Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway",7e-18,"PHYPADRAFT_102741","hypothetical protein"]
["Contig6581@@KO",21.509484660696316,21.336378653769255,8.383299379111147,14.097468458004622,9e-18,"KCR1","beta-ketoacyl reductase 1 \\\\ Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. \\\\ beta-ketoacyl reductase 1 (KCR1); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity, acetoacetyl-CoA reductase activity; INVOLVED IN: very long-chain fatty acid biosynthetic process, embryo development, cuticle development; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 2 (TAIR:AT1G24470.1); Has 86831 Blast hits to 86679 proteins in 3373 species: Archae - 739; Bacteria - 59178; Metazoa - 5127; Fungi - 3946; Plants - 2216; Viruses - 0; Other Eukaryotes - 15625 (source: NCBI BLink).",9e-17,"AN5861.2","hypothetical protein","","","",1e-19,"chlredraft_115715","hypothetical protein",3e-15,"IFA38","Microsomal beta-keto-reductase; contains oleate response element (ORE) sequence in the promoter region; mutants exhibit reduced VLCFA synthesis, accumulate high levels of dihydrosphingosine, phytosphingosine and medium-chain ceramides",3E-23,"PHYPADRAFT_126894","hypothetical protein"]
["Contig3943@@WT",18.968289341468353,21.625761845126313,8.069059109294287,13.960195831012456,9e-18,"KCR1","beta-ketoacyl reductase 1 \\\\ Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. \\\\ beta-ketoacyl reductase 1 (KCR1); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity, acetoacetyl-CoA reductase activity; INVOLVED IN: very long-chain fatty acid biosynthetic process, embryo development, cuticle development; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 2 (TAIR:AT1G24470.1); Has 86831 Blast hits to 86679 proteins in 3373 species: Archae - 739; Bacteria - 59178; Metazoa - 5127; Fungi - 3946; Plants - 2216; Viruses - 0; Other Eukaryotes - 15625 (source: NCBI BLink).",9e-17,"AN5861.2","hypothetical protein","","","",1e-19,"chlredraft_115715","hypothetical protein",3e-15,"IFA38","Microsomal beta-keto-reductase; contains oleate response element (ORE) sequence in the promoter region; mutants exhibit reduced VLCFA synthesis, accumulate high levels of dihydrosphingosine, phytosphingosine and medium-chain ceramides",3E-23,"PHYPADRAFT_126894","hypothetical protein"]
["TRINITY_DN54163_c0_g1_i1@@W-35D-3@@KO",23.654369581125792,32.097923840326,8.63224756999911,16.189225337556724,2E-12,"AT2G44920","Tetratricopeptide repeat (TPR)-like superfamily protein \\\\ Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (TAIR:AT5G55000.1); Has 14558 Blast hits to 5841 proteins in 857 species: Archae - 260; Bacteria - 11175; Metazoa - 170; Fungi - 0; Plants - 186; Viruses - 55; Other Eukaryotes - 2712 (source: NCBI BLink).","","","","","","",3e-15,"chlredraft_115715","hypothetical protein","","","",1e-21,"PHYPADRAFT_126894","hypothetical protein"]
["Contig3226",36.15554590673514,51.97594474537935,20.262289280187545,36.719993424324244,8e-15,"AT1G12250","Pentapeptide repeat-containing protein \\\\ Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink).","","","","","","",2e-15,"chlredraft_115715","hypothetical protein","","","",2e-13,"PHYPADRAFT_130922","hypothetical protein"]
["Contig16005@@KO",0.09461016546147233,0,4.455661034201977,0,3E-49,"UBC22","ubiquitin-conjugating enzyme 22 \\\\ ubiquitin-conjugating enzyme 22 (UBC22); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-35,"AN1159.2","hypothetical protein","","","",8e-49,"chlredraft_111359","hypothetical protein",9e-24,"RAD6","Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p), DSBR and checkpoint control (as a heterodimer with Bre1p), ubiquitin-mediated N-end rule protein degradation (as a heterodimer with Ubr1p",2e-48,"PHYPADRAFT_119740","hypothetical protein"]
["Contig22384@@KO",0.3898717101150132,0,6.4987721503339575,0,8e-68,"SAR2","secretion-associated RAS super family 2 \\\\ A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. \\\\ secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).",2e-63,"AN0411.2","SARA_ASPNG GTP-binding protein SARA","","","",2e-67,"sar1","sar-type small GTPase",2e-60,"SAR1","GTPase, GTP-binding protein of the ARF family, component of COPII coat of vesicles; required for transport vesicle formation during ER to Golgi protein transport",1e-66,"Sar12","Sar1-family small GTPase"]
["Contig3544",250.78870112676876,174.47713726447884,226.83139899582486,229.47636547153436,8e-69,"SAR1B","secretion-associated RAS 1B \\\\ Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins.  A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.   The protein is found associated to the ER and free in the cytosol. \\\\ secretion-associated RAS 1B (SAR1B); FUNCTIONS IN: GTP binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 6720 Blast hits to 6718 proteins in 371 species: Archae - 2; Bacteria - 32; Metazoa - 3237; Fungi - 1226; Plants - 1080; Viruses - 0; Other Eukaryotes - 1143 (source: NCBI BLink).",8e-62,"AN0411.2","SARA_ASPNG GTP-binding protein SARA","","","",2e-71,"sar1","sar-type small GTPase",4e-54,"SAR1","GTPase, GTP-binding protein of the ARF family, component of COPII coat of vesicles; required for transport vesicle formation during ER to Golgi protein transport",1e-67,"Sar13","Sar1-family small GTPase"]
["Contig23300@@KO",0.10195636654436313,0.11934028262141863,8.743266582864607,0,"","","","","","","","","",2e-17,"chlredraft_193232","hypothetical protein","","","","","",""]
["Contig15275@@KO",0.07221909296892388,0,4.619478621479353,0,"","","","","","","","","",4e-21,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN29306_c0_g1_i1@@W-35D-3@@KO",0,0.25487246288493925,9.642514323922887,0,"","","","","","","","","",2e-11,"chlredraft_193232","hypothetical protein","","","","","",""]
["Contig23585@@KO",0,0,0.9608233691155448,0,"","","","","","","","","",4e-13,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN39367_c1_g1_i1@@W-35D-3@@KO",0,0.08220359824003715,0.7898372979179972,0,"","","","","","","","","",6e-25,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN39206_c2_g4_i3@@W-35D-3@@KO",0,0,1.4503857524267985,0,"","","","","","","","","",2e-27,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN16183_c1_g1_i1@@W-35D-3@@KO",0,0,0.9618347621356663,0,"","","","","","","","","",2E-16,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN39367_c1_g2_i1@@W-35D-3@@KO",0,0.34898821179428613,6.007790524960546,0,"","","","","","","","","",1e-15,"chlredraft_193232","hypothetical protein","","","","","",""]
["Contig23298@@KO",0.07158280140091575,0,4.763271270635147,0.03181651265451012,"","","","","","","","","",7e-11,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN54859_c0_g1_i1@@W-35D-3@@KO",0,0,0.5623033994023896,0,"","","","","","","","","",3e-15,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN32000_c0_g2_i1@@W-25D-2@@KO",0.4387995522162464,0,8.173566290891275,0,"","","","","","","","","",3e-15,"chlredraft_193232","hypothetical protein","","","","","",""]
["TRINITY_DN19877_c0_g1_i1@@W-35D-3@@KO",0.11887916538094466,0,0.9191745097684237,0,"","","","","","","","","",7e-21,"chlredraft_193232","hypothetical protein","","","","","",""]
["Contig157",24.01535285738364,13.351476291070597,15.901202688018394,19.563183233655128,2E-78,"AT4G19880","Glutathione S-transferase family protein \\\\ Glutathione S-transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT5G45020.2); Has 2453 Blast hits to 2453 proteins in 809 species: Archae - 30; Bacteria - 1521; Metazoa - 25; Fungi - 239; Plants - 128; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).",2e-69,"AN2174.2","hypothetical protein","","","",5e-75,"chlredraft_102428","hypothetical protein",2e-63,"ECM4","Omega class glutathione transferase; not essential; similar to Ygr154cp; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm",5e-78,"PHYPADRAFT_62987","hypothetical protein"]
["TRINITY_DN8228_c0_g1_i1@@W-35D-3@@KO",0.06068831341926376,0,2.559504268988468,0,2e-54,"AT4G19880","Glutathione S-transferase family protein \\\\ Glutathione S-transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT5G45020.2); Has 2453 Blast hits to 2453 proteins in 809 species: Archae - 30; Bacteria - 1521; Metazoa - 25; Fungi - 239; Plants - 128; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).",1e-38,"AN2174.2","hypothetical protein","","","",3e-47,"chlredraft_102428","hypothetical protein",5e-37,"ECM4","Omega class glutathione transferase; not essential; similar to Ygr154cp; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm",4e-53,"PHYPADRAFT_62987","hypothetical protein"]
["Contig10905@@KO",4.624127243715584,5.016516304882641,4.91515421566812,9.324010392495063,3e-21,"AT4G04320","malonyl-CoA decarboxylase family protein \\\\ malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-12,"chlredraft_206199","malonyl-CoA decarboxylase","","","",1e-15,"PHYPADRAFT_121998","hypothetical protein"]
["TRINITY_DN16762_c0_g2_i1@@W-35D-5@@WT",9.581258150857233,13.062395049306527,4.403163120913229,10.112109844354888,7e-21,"AT4G04320","malonyl-CoA decarboxylase family protein \\\\ malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",6e-12,"chlredraft_206199","malonyl-CoA decarboxylase","","","",3e-15,"PHYPADRAFT_121998","hypothetical protein"]
["Contig14584",6.890118690955379,6.376579475143062,3.871153389283301,9.537076255393185,7e-21,"AT4G04320","malonyl-CoA decarboxylase family protein \\\\ malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",6e-12,"chlredraft_206199","malonyl-CoA decarboxylase","","","",3e-15,"PHYPADRAFT_121998","hypothetical protein"]
["Contig18835@@KO",2.4433156884768263,0.5252895063600992,3.049315039912268,3.324441138123727,8e-44,"AT1G23280","MAK16 protein-related \\\\ MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink).",4e-43,"AN6612.2","hypothetical protein","","","",3E-51,"chlredraft_206198","MAK16-like protein RBM13",4E-41,"MAK16","Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus",1E-53,"PHYPADRAFT_65635","hypothetical protein"]
["Contig7899@@KO",0.5649472722471229,0.13225455049309756,2.462062906987864,0,3e-20,"AT1G23280","MAK16 protein-related \\\\ MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink).",3e-17,"AN6612.2","hypothetical protein","","","",3e-26,"chlredraft_206198","MAK16-like protein RBM13",4e-16,"MAK16","Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus",3e-26,"PHYPADRAFT_65635","hypothetical protein"]
["TRINITY_DN1853_c0_g1_i1@@W-35D-3@@KO",0.2280602935860754,0,1.4427521432034995,0,5e-37,"AT1G23280","MAK16 protein-related \\\\ MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink).",2e-37,"AN6612.2","hypothetical protein","","","",5e-41,"chlredraft_206198","MAK16-like protein RBM13",6e-33,"MAK16","Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus",1e-38,"PHYPADRAFT_65635","hypothetical protein"]
["Contig14528",3.1550260312181395,1.1527186389568844,3.2560427623924846,4.814898915049198,1e-43,"AT1G23280","MAK16 protein-related \\\\ MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink).",6e-43,"AN6612.2","hypothetical protein","","","",4E-51,"chlredraft_206198","MAK16-like protein RBM13",5e-41,"MAK16","Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus",2e-53,"PHYPADRAFT_65635","hypothetical protein"]
["Contig11570",21.35367008155218,17.53270818759113,8.272570587915814,14.682469531075949,4e-17,"AT5G19370","rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein \\\\ rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1e-20,"pin3","peptidyl-prolyl cis-trans isomerase, parvulin-type","","","",2E-16,"PHYPADRAFT_139887","hypothetical protein"]
["Contig7011",13.946455901518119,13.009600380637782,8.433233812775354,15.875970280682244,7e-18,"AT5G19370","rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein \\\\ rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-17,"pin3","peptidyl-prolyl cis-trans isomerase, parvulin-type","","","",2E-19,"PHYPADRAFT_139887","hypothetical protein"]
["TRINITY_DN35869_c0_g1_i1@@W-35D-3@@KO",0.3417307238277155,0,5.476693203958605,0,2e-32,"PIN1AT","peptidylprolyl cis/trans isomerase, NIMA-interacting 1 \\\\ phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds \\\\ peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1AT); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G26550.1); Has 6394 Blast hits to 6305 proteins in 1691 species: Archae - 14; Bacteria - 4880; Metazoa - 261; Fungi - 147; Plants - 126; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink).",2e-39,"AN6145.2","similar to peptidyl-prolyl cis/trans isomerase",9E-13,"prsa","foldase protein PrsA",2E-35,"pin4","peptidyl-prolyl cis-trans isomerase, parvulin-type",8e-36,"ESS1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",7e-33,"PHYPADRAFT_108242","hypothetical protein"]
["Contig11458",7.764996876018695,3.3272070794851514,8.382069340424954,12.66511010614541,6e-29,"PIN1AT","peptidylprolyl cis/trans isomerase, NIMA-interacting 1 \\\\ phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds \\\\ peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1AT); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G26550.1); Has 6394 Blast hits to 6305 proteins in 1691 species: Archae - 14; Bacteria - 4880; Metazoa - 261; Fungi - 147; Plants - 126; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink).",4e-25,"AN6145.2","similar to peptidyl-prolyl cis/trans isomerase","","","",5e-30,"pin4","peptidyl-prolyl cis-trans isomerase, parvulin-type",5e-20,"ESS1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",2e-27,"PHYPADRAFT_161354","hypothetical protein"]
["Contig11133",8.332972265645063,3.9765382633838087,6.443059784819047,6.153953642903117,3e-17,"AT5G55570","unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","","","","","","",2e-13,"cgl18","hypothetical protein","","","",4e-16,"PHYPADRAFT_142011","hypothetical protein"]
["TRINITY_DN13002_c0_g1_i1@@W-35D-3@@KO",0,0,0.9825193806762184,0,"","","",1e-12,"AN1850.2","hypothetical protein","","","",2E-12,"chlredraft_206195","metalloprotease","","","",5e-11,"PHYPADRAFT_185330","hypothetical protein"]
["TRINITY_DN26130_c0_g1_i2@@W-25D-4@@WT",3.663071519660881,2.509836871625711,2.260807482133319,3.256261534301313,2e-18,"AT5G51740","Peptidase family M48 family protein \\\\ Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).",3e-25,"AN1850.2","hypothetical protein","","","",1e-12,"chlredraft_206195","metalloprotease",3e-19,"OMA1","Metalloendopeptidase of the mitochondrial inner membrane; involved in turnover of membrane-embedded proteins; mediates degradation of Cox1p in coa2 mutant cells; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes",5e-21,"PHYPADRAFT_185330","hypothetical protein"]
["Contig10512",4.664503769404613,2.0586198752194713,2.7591456019695686,2.2771639574703264,2e-18,"AT5G51740","Peptidase family M48 family protein \\\\ Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).",1E-25,"AN1850.2","hypothetical protein","","","",1e-12,"chlredraft_206195","metalloprotease",1e-20,"OMA1","Metalloendopeptidase of the mitochondrial inner membrane; involved in turnover of membrane-embedded proteins; mediates degradation of Cox1p in coa2 mutant cells; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes",6e-21,"PHYPADRAFT_185330","hypothetical protein"]
["Contig13078",5.1781516429458225,3.7631760163451276,4.319730645441863,4.96981030496214,2e-18,"AT5G51740","Peptidase family M48 family protein \\\\ Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).",1E-25,"AN1850.2","hypothetical protein","","","",1e-12,"chlredraft_206195","metalloprotease",1e-20,"OMA1","Metalloendopeptidase of the mitochondrial inner membrane; involved in turnover of membrane-embedded proteins; mediates degradation of Cox1p in coa2 mutant cells; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes",5e-21,"PHYPADRAFT_185330","hypothetical protein"]
["Contig14906",11.667766754227875,8.062367359178209,25.880582761511718,34.45575061751969,9e-12,"P5CS2","delta 1-pyrroline-5-carboxylate synthase 2 \\\\ encodes delta 1-pyrroline-5-carboxylate synthetase B. Gene expression is induced by dehydration, high salt and ABA. Knock-out mutations in P5CS2 are embryo-lethal. P5CS2 appears to be present in different cells and/or different subcellular locations from P5CS1 in a tissue-dependent manner. \\\\ delta 1-pyrroline-5-carboxylate synthase 2 (P5CS2); FUNCTIONS IN: oxidoreductase activity, glutamate-5-semialdehyde dehydrogenase activity, catalytic activity, glutamate 5-kinase activity; INVOLVED IN: hyperosmotic salinity response, proline biosynthetic process, response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Glutamate 5-kinase, conserved site (InterPro:IPR019797), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Gamma-glutamyl phosphate reductase GPR, conserved site (InterPro:IPR020593), Aldehyde dehydrogenase, C-terminal (InterPro:IPR016163), Delta l-pyrroline-5-carboxylate synthetase (InterPro:IPR005766), Gamma-glutamyl phosphate reductase GPR (InterPro:IPR000965), Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Glutamate 5-kinase, ProB-related (InterPro:IPR005715); BEST Arabidopsis thaliana protein match is: delta1-pyrroline-5-carboxylate synthase 1 (TAIR:AT2G39800.4); Has 14836 Blast hits to 14828 proteins in 2349 species: Archae - 139; Bacteria - 9225; Metazoa - 151; Fungi - 264; Plants - 176; Viruses - 0; Other Eukaryotes - 4881 (source: NCBI BLink).",2e-22,"AN5817.2","hypothetical protein",2e-24,"proj","glutamate 5-kinase",3e-30,"prob1","glutamate 5-kinase",1E-25,"YHR033W","Putative protein of unknown function; epitope-tagged protein localizes to the cytoplasm; YHR033W has a paralog, PRO1, that arose from the whole genome duplication",2E-12,"PHYPADRAFT_117839","hypothetical protein"]
["TRINITY_DN36853_c0_g1_i1@@W-25D-2@@KO",1.0077082739849843,0.16850372130931202,0,0.19195610292554943,"","","",2e-15,"AN5817.2","hypothetical protein","","","",3e-13,"prob1","glutamate 5-kinase","","","","","",""]
["Contig5945",36.793981430956634,36.39607974767089,23.674284126983714,42.24789317773891,1E-22,"TIC110","translocon at the inner envelope membrane of chloroplasts 110 \\\\ Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. \\\\ translocon at the inner envelope membrane of chloroplasts 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 131 Blast hits to 118 proteins in 52 species: Archae - 4; Bacteria - 6; Metazoa - 16; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","","","","","","",5e-11,"tic110","110 kDa translocon of chloroplast envelope inner membrane","","","",2e-23,"PHYPADRAFT_228211","hypothetical protein"]
["TRINITY_DN31764_c0_g1_i2@@W-25D-2@@KO",28.95026882256595,28.3204283092089,18.530879206456333,32.608975173835525,2e-20,"TIC110","translocon at the inner envelope membrane of chloroplasts 110 \\\\ Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. \\\\ translocon at the inner envelope membrane of chloroplasts 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 131 Blast hits to 118 proteins in 52 species: Archae - 4; Bacteria - 6; Metazoa - 16; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","","","","","","",3E-11,"tic110","110 kDa translocon of chloroplast envelope inner membrane","","","",5e-23,"PHYPADRAFT_228211","hypothetical protein"]
["Contig12042@@KO",0.44540409760569794,0,4.2936529763471745,0,3e-25,"AT1G06960","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein B (TAIR:AT2G30260.1); Has 1664 Blast hits to 1652 proteins in 256 species: Archae - 0; Bacteria - 2; Metazoa - 815; Fungi - 369; Plants - 285; Viruses - 1; Other Eukaryotes - 192 (source: NCBI BLink).",4e-13,"AN0109.2","hypothetical protein","","","",1E-26,"chlredraft_54909","hypothetical protein","","","",2e-24,"PHYPADRAFT_131194","hypothetical protein"]
["Contig11156",1.6165102674909386,2.049808481295351,0.6312559751494874,1.1974878130692306,2e-11,"U2B''","U2 small nuclear ribonucleoprotein B \\\\ encodes U2B, which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled  body and the nucleus. \\\\ U2 small nuclear ribonucleoprotein B (U2B''); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: cis assembly of pre-catalytic spliceosome; LOCATED IN: nucleoplasm, Cajal body, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1); Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0; Bacteria - 2; Metazoa - 926; Fungi - 414; Plants - 327; Viruses - 1; Other Eukaryotes - 215 (source: NCBI BLink).","","","","","","",1e-12,"chlredraft_54909","hypothetical protein","","","",2E-12,"PHYPADRAFT_131194","hypothetical protein"]
["TRINITY_DN20888_c0_g1_i1@@W-25D-4@@WT",1.195743195017662,0.9330810533474911,0.3201902843728018,0.5314737304390704,2e-11,"U2B''","U2 small nuclear ribonucleoprotein B \\\\ encodes U2B, which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled  body and the nucleus. \\\\ U2 small nuclear ribonucleoprotein B (U2B''); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: cis assembly of pre-catalytic spliceosome; LOCATED IN: nucleoplasm, Cajal body, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1); Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0; Bacteria - 2; Metazoa - 926; Fungi - 414; Plants - 327; Viruses - 1; Other Eukaryotes - 215 (source: NCBI BLink).","","","","","","",1e-12,"chlredraft_54909","hypothetical protein","","","",1e-12,"PHYPADRAFT_131194","hypothetical protein"]
["TRINITY_DN25352_c0_g3_i1@@W-25D-2@@KO",3.076789759622792,1.5606036958185512,1.5138937676218183,1.9145633555698585,7e-24,"ERCC1","nucleotide repair protein, putative \\\\ encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. \\\\ ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).",2E-19,"AN4331.2","hypothetical protein","","","",9e-12,"chlredraft_102433","hypothetical protein","","","",2e-21,"PHYPADRAFT_135142","hypothetical protein"]
["Contig14112",4.06580497691371,2.412115609539599,3.758326062843735,3.5647580656405373,2e-28,"ERCC1","nucleotide repair protein, putative \\\\ encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. \\\\ ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).",1e-24,"AN4331.2","hypothetical protein","","","",4e-16,"chlredraft_102433","hypothetical protein","","","",1E-27,"PHYPADRAFT_135142","hypothetical protein"]
["Contig1998@@KO",2.368427396744833,1.8271664388931486,0.9837399016460024,1.4354978131823695,7e-23,"ERCC1","nucleotide repair protein, putative \\\\ encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. \\\\ ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).",1e-19,"AN4331.2","hypothetical protein","","","",4e-12,"chlredraft_102433","hypothetical protein","","","",4e-20,"PHYPADRAFT_135142","hypothetical protein"]
["Contig6245@@WT",19.19484655860714,22.946039763506,7.156164996967758,6.589417482780415,1e-57,"SOS1","sodium proton exchanger, putative (NHX7) (SOS1) \\\\ Encodes a plasma membrane-localized Na+/H+ antiporter SOS1.  Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance.  Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. \\\\ SALT OVERLY SENSITIVE 1 (SOS1); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 8 (TAIR:AT1G14660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-13,"AN2288.2","hypothetical protein",5E-15,"nhak","sodium, potassium, lithium and rubidium/H(+) antiporter",2e-11,"chlredraft_148674","hypothetical protein","","","",3e-63,"PHYPADRAFT_175277","hypothetical protein"]
["TRINITY_DN16716_c0_g1_i1@@W-35D-3@@KO",0,0,1.1048887835899432,0,5e-25,"NHX5","sodium hydrogen exchanger 5 \\\\ sodium hydrogen exchanger 5 (NHX5); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: lithium ion transport, sodium ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 6 (TAIR:AT1G79610.1); Has 6647 Blast hits to 6641 proteins in 1771 species: Archae - 114; Bacteria - 4554; Metazoa - 890; Fungi - 160; Plants - 421; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).",2e-27,"AN2288.2","hypothetical protein","","","",2e-15,"chlredraft_148674","hypothetical protein",4e-26,"NHX1","Na+/H+ and K+/H+ exchanger, required for intracellular sequestration of Na+ and K+; located in the vacuole and late endosome compartments; required for osmotolerance to acute hypertonic shock and for vacuolar fusion",2E-19,"PHYPADRAFT_129706","hypothetical protein"]
["Contig2609",0.2876673352492855,0.29279619058509404,80.23109479277998,0.2501607171911836,1E-42,"NHX8","Na+/H+ exchanger 8 \\\\ member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. \\\\ Na+/H+ exchanger 8 (NHX8); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: sodium proton exchanger, putative (NHX7) (SOS1) (TAIR:AT2G01980.1); Has 7911 Blast hits to 7887 proteins in 1969 species: Archae - 132; Bacteria - 5569; Metazoa - 988; Fungi - 148; Plants - 408; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).","","","","","","",8e-11,"chlredraft_148674","hypothetical protein","","","",4e-45,"PHYPADRAFT_175277","hypothetical protein"]
["Contig22660@@KO",0.14673085555590884,0.03220293340577963,68.27771506535399,0.09782651763909482,9e-43,"NHX8","Na+/H+ exchanger 8 \\\\ member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. \\\\ Na+/H+ exchanger 8 (NHX8); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: sodium proton exchanger, putative (NHX7) (SOS1) (TAIR:AT2G01980.1); Has 7911 Blast hits to 7887 proteins in 1969 species: Archae - 132; Bacteria - 5569; Metazoa - 988; Fungi - 148; Plants - 408; Viruses - 0; Other Eukaryotes - 666 (source: NCBI BLink).","","","","","","",5e-11,"chlredraft_148674","hypothetical protein","","","",3e-45,"PHYPADRAFT_175277","hypothetical protein"]
["Contig9444",0.5046924966214315,1.012704561346481,0.2027161450979219,0.28841324615935293,6e-69,"ROC5","rotamase cyclophilin 5 \\\\ belongs to cyclophilin family \\\\ rotamase cyclophilin 5 (ROC5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16787 Blast hits to 16755 proteins in 2701 species: Archae - 108; Bacteria - 6977; Metazoa - 2940; Fungi - 1375; Plants - 1301; Viruses - 4; Other Eukaryotes - 4082 (source: NCBI BLink).",3e-63,"AN8605.2","hypothetical protein",3e-19,"ppib","peptidyl-prolyl cis-trans isomerase",5e-69,"cyn19-2","peptidyl-prolyl cis-trans isomerase, cyclophilin-type",4e-59,"CPR1","Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; protein abundance increases in response to DNA replication stress",8e-67,"PHYPADRAFT_170556","hypothetical protein"]
["TRINITY_DN29925_c1_g1_i1@@W-35D-5@@WT",322.3896121253242,266.9067612202895,438.1183838353363,384.3960621435971,4e-68,"AT2G21130","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \\\\ Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).",9E-60,"AN8605.2","hypothetical protein",7e-19,"ppib","peptidyl-prolyl cis-trans isomerase",2e-65,"cyn19-2","peptidyl-prolyl cis-trans isomerase, cyclophilin-type",2e-59,"CPR1","Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; protein abundance increases in response to DNA replication stress",1e-64,"PHYPADRAFT_170556","hypothetical protein"]
["TRINITY_DN46153_c0_g1_i1@@W-35D-3@@KO",288.10516346209073,240.33296915605686,385.6739786489331,348.5551077037244,4e-68,"AT2G21130","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \\\\ Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).",1E-59,"AN8605.2","hypothetical protein",8e-19,"ppib","peptidyl-prolyl cis-trans isomerase",2e-65,"cyn19-2","peptidyl-prolyl cis-trans isomerase, cyclophilin-type",2e-59,"CPR1","Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; protein abundance increases in response to DNA replication stress",1e-64,"PHYPADRAFT_170556","hypothetical protein"]
["Contig13229",175.1859516619862,145.62699952409187,233.0371586873882,206.5663182311035,8e-68,"AT2G21130","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \\\\ Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).",2e-59,"AN8605.2","hypothetical protein",1e-18,"ppib","peptidyl-prolyl cis-trans isomerase",4e-65,"cyn19-2","peptidyl-prolyl cis-trans isomerase, cyclophilin-type",4e-59,"CPR1","Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; protein abundance increases in response to DNA replication stress",3e-64,"PHYPADRAFT_170556","hypothetical protein"]
["Contig6281",12.757300993176045,0.8883336300218191,252.60663416578296,1.4456744031840794,9e-64,"AT2G21130","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein \\\\ Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).",2E-55,"AN4583.2","hypothetical protein",1E-14,"ppib","peptidyl-prolyl cis-trans isomerase",3e-62,"cyn19-2","peptidyl-prolyl cis-trans isomerase, cyclophilin-type",1e-48,"CPR3","Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; involved in protein refolding after import into mitochondria",3e-64,"PHYPADRAFT_170556","hypothetical protein"]
["Contig18262@@KO",0.5754509399914254,0,4.530288565349044,0,1E-25,"AT5G23535","KOW domain-containing protein \\\\ KOW domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G54600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","",1e-19,"rplx","50S ribosomal protein L24",1e-11,"chlredraft_99818","hypothetical protein","","","",1E-26,"PHYPADRAFT_192641","hypothetical protein"]
["TRINITY_DN40169_c0_g1_i1@@W-35D-3@@KO",0,0,0.8785990615662337,0,"","","","","","","","","",1e-16,"cgld12","protein with potential galactosyl transferase activity","","","",6e-13,"PHYPADRAFT_178689","hypothetical protein"]
["TRINITY_DN14381_c0_g1_i1@@W-35D-3@@KO",0.037581488101781725,0,1.2679868503436365,0,9e-24,"AT2G42450","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (TAIR:AT3G14075.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",9e-15,"AN8743.2","hypothetical protein","","","",1e-20,"chlredraft_181264","hypothetical protein","","","",2e-29,"PHYPADRAFT_159416","hypothetical protein"]
["Contig293",4.519231584558427,1.8669798815007208,2.7406062070395945,2.4812976003934515,2e-22,"UVH3","5'-3' exonuclease family protein \\\\ Required for repair of pyrimidine-pyrimidinone (6-4) dimers. \\\\ ULTRAVIOLET HYPERSENSITIVE 3 (UVH3); FUNCTIONS IN: protein binding, nuclease activity; INVOLVED IN: DNA repair, response to UV-B, response to heat, non-photoreactive DNA repair; LOCATED IN: nucleus; EXPRESSED IN: stem, leaf whorl, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), Xeroderma pigmentosum group G protein (InterPro:IPR001044), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5&apos;-3&apos; exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G01880.1); Has 8115 Blast hits to 5779 proteins in 624 species: Archae - 528; Bacteria - 414; Metazoa - 2441; Fungi - 1496; Plants - 576; Viruses - 71; Other Eukaryotes - 2589 (source: NCBI BLink).",1e-16,"AN5216.2","hypothetical protein","","","",3e-19,"chlredraft_96792","hypothetical protein",1e-15,"RAD2","Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein",1E-22,"PHYPADRAFT_71061","hypothetical protein"]
["Contig364",13.058495255663066,5.760683758542734,8.671564286594146,14.291572751382777,2e-42,"SERAT2;2","serine acetyltransferase 2;2 \\\\ Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. \\\\ serine acetyltransferase 2;2 (SERAT2;2); FUNCTIONS IN: zinc ion binding, serine O-acetyltransferase activity; INVOLVED IN: response to cadmium ion, cysteine biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: serine acetyltransferase 2;1 (TAIR:AT1G55920.1); Has 25521 Blast hits to 25511 proteins in 2666 species: Archae - 387; Bacteria - 19255; Metazoa - 8; Fungi - 225; Plants - 240; Viruses - 18; Other Eukaryotes - 5388 (source: NCBI BLink).","","","",2e-27,"cyse","serine acetyltransferase",5e-39,"sat2","serine O-acetyl transferase","","","",6e-41,"PHYPADRAFT_61589","hypothetical protein"]
["TRINITY_DN36101_c0_g1_i1@@W-35D-3@@KO",2.5200846657976665,1.8845739299262798,1.6729813040916546,1.49347429998295,3e-36,"ATSERAT3;1","Trimeric LpxA-like enzymes superfamily protein \\\\ Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation. \\\\ ATSERAT3;1; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: serine acetyltransferase 3;2 (TAIR:AT4G35640.1); Has 24316 Blast hits to 24306 proteins in 2619 species: Archae - 371; Bacteria - 18535; Metazoa - 5; Fungi - 223; Plants - 313; Viruses - 18; Other Eukaryotes - 4851 (source: NCBI BLink).","","","",7e-20,"cyse","serine acetyltransferase",6E-37,"sat2","serine O-acetyl transferase","","","",3e-35,"PHYPADRAFT_15820","hypothetical protein"]
["Contig15142",8.356385469967437,9.522074274295184,5.523691332997079,7.821904750884521,1e-49,"ATSERAT3;1","Trimeric LpxA-like enzymes superfamily protein \\\\ Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation. \\\\ ATSERAT3;1; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: serine acetyltransferase 3;2 (TAIR:AT4G35640.1); Has 24316 Blast hits to 24306 proteins in 2619 species: Archae - 371; Bacteria - 18535; Metazoa - 5; Fungi - 223; Plants - 313; Viruses - 18; Other Eukaryotes - 4851 (source: NCBI BLink).","","","",3E-23,"cyse","serine acetyltransferase",2E-50,"sat2","serine O-acetyl transferase","","","",1e-48,"PHYPADRAFT_15820","hypothetical protein"]
["Contig18541@@KO",0.09576012327371122,0,4.913682560155319,0,3e-36,"AT1G17160","pfkB-like carbohydrate kinase family protein \\\\ pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422; Bacteria - 18834; Metazoa - 425; Fungi - 293; Plants - 520; Viruses - 0; Other Eukaryotes - 3820 (source: NCBI BLink).",2e-22,"AN7995.2","hypothetical protein",3E-37,"rbsk","ribokinase",1e-29,"chlredraft_111372","PfkB-type carbohydrate kinase",3e-25,"RBK1","Putative ribokinase",1e-36,"PHYPADRAFT_192324","hypothetical protein"]
["Contig20420@@KO",0,0.09155166085578144,1.9792267668495662,0.10429383931514508,3e-12,"AT4G32930","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-11,"AN7606.2","hypothetical protein","","","",1E-13,"chlredraft_173642","hypothetical protein","","","",6e-21,"PHYPADRAFT_210689","hypothetical protein"]
["Contig5861",1.8261435579030698,0.15833388172976975,30.236241585971364,0.12024721536022971,3e-17,"ARK2","armadillo repeat kinesin 2 \\\\ Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. \\\\ armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink).","","","","","","",6e-14,"chlredraft_140706","hypothetical protein",3e-21,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1e-15,"PHYPADRAFT_115724","hypothetical protein"]
["TRINITY_DN22029_c0_g1_i1@@W-35D-3@@KO",0.33308596337868457,0.03544348016359393,1.7453279284968182,0.040376510818022626,3e-13,"ARIA","ARM repeat protein interacting with  ABF2 \\\\ Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. \\\\ ARM repeat protein interacting with  ABF2 (ARIA); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, negative regulation of seed germination, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARMADILLO BTB protein 1 (TAIR:AT5G13060.1); Has 17070 Blast hits to 12388 proteins in 371 species: Archae - 10; Bacteria - 73; Metazoa - 10231; Fungi - 1020; Plants - 4279; Viruses - 94; Other Eukaryotes - 1363 (source: NCBI BLink).","","","","","","",2e-15,"chlredraft_140706","hypothetical protein","","","",1E-14,"PHYPADRAFT_106616","hypothetical protein"]
["Contig6932",0.4540721414213777,0.03037103000844486,13.113397889755825,0.034598076036281664,2e-13,"ARK3","armadillo repeat kinesin 3 \\\\ Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved  in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. \\\\ armadillo repeat kinesin 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1); Has 26314 Blast hits to 21250 proteins in 1081 species: Archae - 170; Bacteria - 1529; Metazoa - 12103; Fungi - 2761; Plants - 3107; Viruses - 18; Other Eukaryotes - 6626 (source: NCBI BLink).","","","","","","",2E-14,"chlredraft_140706","hypothetical protein",4e-20,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1E-14,"PHYPADRAFT_73690","hypothetical protein"]
["Contig6933",0.7239145357266833,0.07565575792676449,17.046359517483936,0.03447421657553125,2e-13,"ARIA","ARM repeat protein interacting with  ABF2 \\\\ Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. \\\\ ARM repeat protein interacting with  ABF2 (ARIA); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, negative regulation of seed germination, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARMADILLO BTB protein 1 (TAIR:AT5G13060.1); Has 17070 Blast hits to 12388 proteins in 371 species: Archae - 10; Bacteria - 73; Metazoa - 10231; Fungi - 1020; Plants - 4279; Viruses - 94; Other Eukaryotes - 1363 (source: NCBI BLink).","","","","","","",2E-14,"chlredraft_140706","hypothetical protein",1e-20,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",9e-14,"PHYPADRAFT_73690","hypothetical protein"]
["Contig20450@@KO",0.22872909210099057,0,12.75488796005127,0.03388785160151928,2e-13,"ARK3","armadillo repeat kinesin 3 \\\\ Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved  in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. \\\\ armadillo repeat kinesin 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 2 (TAIR:AT1G01950.1); Has 26314 Blast hits to 21250 proteins in 1081 species: Archae - 170; Bacteria - 1529; Metazoa - 12103; Fungi - 2761; Plants - 3107; Viruses - 18; Other Eukaryotes - 6626 (source: NCBI BLink).","","","","","","",1e-11,"chlredraft_140706","hypothetical protein",5e-20,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1E-14,"PHYPADRAFT_73690","hypothetical protein"]
["TRINITY_DN23422_c0_g1_i2@@W-35D-3@@KO",0.7935283245198073,0.1125851722843572,14.502247773155412,0,3e-17,"ARK2","armadillo repeat kinesin 2 \\\\ Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. \\\\ armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink).","","","","","","",5e-14,"chlredraft_140706","hypothetical protein",3e-21,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1e-15,"PHYPADRAFT_115724","hypothetical protein"]
["TRINITY_DN23422_c0_g1_i1@@W-35D-3@@KO",0.2553415190415694,0.0298878138562775,9.009997997691992,0.03404760576345927,3e-17,"ARK2","armadillo repeat kinesin 2 \\\\ Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. \\\\ armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink).","","","","","","",5e-14,"chlredraft_140706","hypothetical protein",2e-21,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1e-15,"PHYPADRAFT_115724","hypothetical protein"]
["Contig20890@@KO",0.28302714422831043,0.13251370375990312,9.429875754184424,0.0377392468847749,2E-19,"ARIA","ARM repeat protein interacting with  ABF2 \\\\ Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. \\\\ ARM repeat protein interacting with  ABF2 (ARIA); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, negative regulation of seed germination, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARMADILLO BTB protein 1 (TAIR:AT5G13060.1); Has 17070 Blast hits to 12388 proteins in 371 species: Archae - 10; Bacteria - 73; Metazoa - 10231; Fungi - 1020; Plants - 4279; Viruses - 94; Other Eukaryotes - 1363 (source: NCBI BLink).","","","","","","",2E-12,"chlredraft_140706","hypothetical protein","","","",7e-21,"PHYPADRAFT_72129","hypothetical protein"]
["TRINITY_DN34315_c0_g1_i1@@W-35D-3@@KO",0.061202621160104984,0,3.3555534780721694,0,6e-13,"ARIA","ARM repeat protein interacting with  ABF2 \\\\ Encodes an armadillo repeat protein involved in the abscisic acid response.  The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. \\\\ ARM repeat protein interacting with  ABF2 (ARIA); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, negative regulation of seed germination, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARMADILLO BTB protein 1 (TAIR:AT5G13060.1); Has 17070 Blast hits to 12388 proteins in 371 species: Archae - 10; Bacteria - 73; Metazoa - 10231; Fungi - 1020; Plants - 4279; Viruses - 94; Other Eukaryotes - 1363 (source: NCBI BLink).","","","","","","",3e-14,"chlredraft_140706","hypothetical protein",4e-11,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",9E-13,"PHYPADRAFT_106476","hypothetical protein"]
["TRINITY_DN23422_c0_g1_i4@@W-35D-3@@KO",1.1685422857932648,0.19539754584409488,18.170930802555667,0.06359800438149739,3e-17,"ARK2","armadillo repeat kinesin 2 \\\\ Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules. \\\\ armadillo repeat kinesin 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo repeat kinesin 3 (TAIR:AT1G12430.1); Has 19604 Blast hits to 16795 proteins in 739 species: Archae - 69; Bacteria - 853; Metazoa - 8320; Fungi - 2122; Plants - 2828; Viruses - 22; Other Eukaryotes - 5390 (source: NCBI BLink).","","","","","","",5e-14,"chlredraft_140706","hypothetical protein",3e-21,"VAC8","Phosphorylated and palmitoylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions",1e-15,"PHYPADRAFT_115724","hypothetical protein"]
["Contig11026",44.19520573048432,67.20490084886394,104.15793496497567,100.32905646242048,2e-17,"MPI7","CAMV movement protein interacting protein 7 \\\\ Encodes protein that interacts with CaMV movement protein.  Colocalizes in the cytoplasm with the movement protein.  Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors. \\\\ CAMV movement protein interacting protein 7 (MPI7); FUNCTIONS IN: protein binding; INVOLVED IN: vesicle-mediated transport, spread of virus in host; LOCATED IN: endoplasmic reticulum, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.E (TAIR:AT1G08770.1); Has 616 Blast hits to 616 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 81; Plants - 374; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).","","","","","","",3e-12,"pra1","prenylated rab acceptor family protein","","","",3e-16,"PHYPADRAFT_196148","hypothetical protein"]
["Contig14185",13.361671301663677,11.27991551433519,5.668857877781714,9.705742607938289,7e-27,"ISPD","Nucleotide-diphospho-sugar transferases superfamily protein \\\\ Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity). \\\\ ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).","","","",7e-16,"ispd","2-D-methyl-D-erythritol 4-phosphate cytidylyltransferase",2e-28,"cms","4-diphosphocytidyl-2C-methyl-D-erythritol synthase","","","",8e-28,"PHYPADRAFT_213502","hypothetical protein"]
["Contig22787@@KO",0,0,1.7045770698624232,0,3e-21,"AT4G14930","Survival protein SurE-like phosphatase/nucleotidase \\\\ Survival protein SurE-like phosphatase/nucleotidase; FUNCTIONS IN: hydrolase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Survival protein SurE-like phosphatase/nucleotidase (InterPro:IPR002828); BEST Arabidopsis thaliana protein match is: Survival protein SurE-like phosphatase/nucleotidase (TAIR:AT1G72880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1e-23,"chlredraft_144281","hypothetical protein","","","",3e-22,"PHYPADRAFT_5105","hypothetical protein"]
["Contig7047@@WT",8.671217984671248,2.739263167049333,2.458812003261349,8.211879900595562,2e-21,"AT3G07270","GTP cyclohydrolase I \\\\ GTP cyclohydrolase I; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I/Nitrile oxidoreductase (InterPro:IPR020602); Has 13749 Blast hits to 7133 proteins in 2143 species: Archae - 132; Bacteria - 8697; Metazoa - 425; Fungi - 313; Plants - 76; Viruses - 16; Other Eukaryotes - 4090 (source: NCBI BLink).",1e-39,"AN8188.2","similar to GTP cyclohydrolase I",1E-41,"fole","GTP cyclohydrolase 1",9e-25,"chlredraft_103770","GTP cyclohydrolase I",1e-49,"FOL2","GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway",6e-19,"PHYPADRAFT_137528","hypothetical protein"]
["Contig19811@@KO",8.744234190841036,2.965059298407365,3.2529731040938312,8.346907394048188,2e-21,"AT3G07270","GTP cyclohydrolase I \\\\ GTP cyclohydrolase I; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I/Nitrile oxidoreductase (InterPro:IPR020602); Has 13749 Blast hits to 7133 proteins in 2143 species: Archae - 132; Bacteria - 8697; Metazoa - 425; Fungi - 313; Plants - 76; Viruses - 16; Other Eukaryotes - 4090 (source: NCBI BLink).",5e-40,"AN8188.2","similar to GTP cyclohydrolase I",1E-41,"fole","GTP cyclohydrolase 1",9e-25,"chlredraft_103770","GTP cyclohydrolase I",6e-50,"FOL2","GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway",3e-19,"PHYPADRAFT_137528","hypothetical protein"]
["Contig3396",3.429398269474039,2.6918234138769703,1.4746938935289235,1.398741584260102,"","","",5e-20,"AN8188.2","similar to GTP cyclohydrolase I",2E-19,"fole","GTP cyclohydrolase 1",5e-11,"chlredraft_103770","GTP cyclohydrolase I",2E-19,"FOL2","GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway","","",""]
["Contig18043@@KO",0.25119684510930046,0.07350669581754046,2.2071087536929546,0,4e-28,"AT3G07270","GTP cyclohydrolase I \\\\ GTP cyclohydrolase I; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase I/Nitrile oxidoreductase (InterPro:IPR020602); Has 13749 Blast hits to 7133 proteins in 2143 species: Archae - 132; Bacteria - 8697; Metazoa - 425; Fungi - 313; Plants - 76; Viruses - 16; Other Eukaryotes - 4090 (source: NCBI BLink).",3E-52,"AN8188.2","similar to GTP cyclohydrolase I",2E-51,"fole","GTP cyclohydrolase 1",3E-34,"chlredraft_103770","GTP cyclohydrolase I",5e-60,"FOL2","GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway",1E-27,"PHYPADRAFT_122994","hypothetical protein"]
["Contig15269",18.55033257772577,11.416348058899914,13.005928532578944,10.985040356886719,7e-40,"AT4G31210","DNA topoisomerase, type IA, core \\\\ DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 21441 Blast hits to 18441 proteins in 2923 species: Archae - 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750; Plants - 256; Viruses - 35; Other Eukaryotes - 8168 (source: NCBI BLink).","","","",4e-45,"topa","DNA topoisomerase 1",3e-74,"chlredraft_114438","DNA topoisomerase-like protein","","","",2E-45,"PHYPADRAFT_137401","hypothetical protein"]
["Contig3750@@KO",13.684717230852018,10.332227337612574,7.372211476414325,9.360497794348296,4e-31,"PAS2","Protein-tyrosine phosphatase-like, PTPLA \\\\ Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). \\\\ PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-16,"AN5000.2","hypothetical protein","","","",1e-21,"chlredraft_95439","hypothetical protein",5e-13,"PHS1","Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane, involved in elongation of very long-chain fatty acids; evolutionarily conserved, similar to mammalian PTPLA and PTPLB; involved in sphingolipid biosynthesis and protein trafficking",1e-31,"PHYPADRAFT_205799","hypothetical protein"]
["Contig17540",11.847381059012655,9.616856526977402,7.147092582668825,7.638469429028393,4e-31,"PAS2","Protein-tyrosine phosphatase-like, PTPLA \\\\ Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). \\\\ PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-16,"AN5000.2","hypothetical protein","","","",1e-21,"chlredraft_95439","hypothetical protein",6e-13,"PHS1","Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane, involved in elongation of very long-chain fatty acids; evolutionarily conserved, similar to mammalian PTPLA and PTPLB; involved in sphingolipid biosynthesis and protein trafficking",1e-31,"PHYPADRAFT_205799","hypothetical protein"]
["Contig12074@@KO",0,0,1.8859505139915027,0,2e-13,"PAS2","Protein-tyrosine phosphatase-like, PTPLA \\\\ Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). \\\\ PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-11,"AN5000.2","hypothetical protein","","","",1E-14,"chlredraft_95439","hypothetical protein","","","",2E-19,"PHYPADRAFT_218307","hypothetical protein"]
["TRINITY_DN26414_c0_g2_i1@@W-25D-4@@WT",17.370343929780386,15.592814704650374,9.290052531884069,9.748684223062574,4e-31,"PAS2","Protein-tyrosine phosphatase-like, PTPLA \\\\ Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). \\\\ PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-16,"AN5000.2","hypothetical protein","","","",1e-21,"chlredraft_95439","hypothetical protein",5e-13,"PHS1","Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane, involved in elongation of very long-chain fatty acids; evolutionarily conserved, similar to mammalian PTPLA and PTPLB; involved in sphingolipid biosynthesis and protein trafficking",1e-31,"PHYPADRAFT_205799","hypothetical protein"]
["Contig13511@@KO",0.42855285937603177,0.16720753883770192,8.300669229273371,0.06349317250614327,5e-34,"PAS2","Protein-tyrosine phosphatase-like, PTPLA \\\\ Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). \\\\ PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-18,"AN5000.2","hypothetical protein","","","",6e-21,"chlredraft_95439","hypothetical protein",3e-26,"PHS1","Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane, involved in elongation of very long-chain fatty acids; evolutionarily conserved, similar to mammalian PTPLA and PTPLB; involved in sphingolipid biosynthesis and protein trafficking",5e-34,"PHYPADRAFT_205799","hypothetical protein"]
["Contig17595",1.7034478931244945,1.370800543624403,1.3470413130646925,2.69728980990471,"","","","","","","","","",5e-13,"chlredraft_95439","hypothetical protein","","","",1e-11,"PHYPADRAFT_205799","hypothetical protein"]
["Contig23422@@KO",0.23721599880303462,0.030851350434369172,2.8531310969271693,0,"","","","","","","","","",6E-11,"ssa18","hypothetical protein","","","","","",""]
["Contig14679",2.534166115747586,1.3690385891981505,1.7617153419580007,1.8937777223715353,8e-15,"AT1G10040","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1); Has 823 Blast hits to 815 proteins in 221 species: Archae - 0; Bacteria - 56; Metazoa - 168; Fungi - 260; Plants - 184; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).","","","","","","",7e-17,"chlredraft_169573","hypothetical protein","","","",4E-14,"PHYPADRAFT_138752","hypothetical protein"]
["Contig15803@@KO",1.2855754769337235,0.6196114150064929,1.0631099756007947,1.3108625318458549,"","","","","","","","","",2e-13,"chlredraft_169573","hypothetical protein","","","",7e-11,"PHYPADRAFT_138752","hypothetical protein"]
["Contig667",2.2335801949151715,0.9063299814203957,1.9677398455604813,1.6678412736665262,3E-37,"PMS1","DNA mismatch repair protein, putative \\\\ Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. \\\\ POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink).",2e-25,"AN6316.2","hypothetical protein","","","",3e-21,"chlredraft_101121","hypothetical protein",2e-25,"PMS1","ATP-binding protein required for mismatch repair in mitosis and meiosis; functions as a heterodimer with Mlh1p, binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL",3e-33,"PHYPADRAFT_155569","hypothetical protein"]
["TRINITY_DN54852_c0_g1_i1@@W-35D-3@@KO",0.1384391558509723,0,1.167722714413908,0,2E-16,"PMS1","DNA mismatch repair protein, putative \\\\ Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. \\\\ POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink).",5e-17,"AN6316.2","hypothetical protein","","","",1E-14,"chlredraft_101121","hypothetical protein",5e-17,"PMS1","ATP-binding protein required for mismatch repair in mitosis and meiosis; functions as a heterodimer with Mlh1p, binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL",1e-15,"PHYPADRAFT_155569","hypothetical protein"]
["Contig16507",2.578835627473314,2.525713876127392,3.872001478341016,3.883108760638867,"","","","","","","","","",2e-34,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["TRINITY_DN321_c0_g1_i1@@W-35D-3@@KO",0.03497292637720285,0,1.4503857524267985,0,"","","","","","","","","",6e-33,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["TRINITY_DN31858_c1_g1_i2@@W-25D-2@@KO",3.6213608578077103,3.7126177259314526,3.4056896572834447,3.596604607437326,"","","","","","","","","",4e-26,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["Contig22553@@KO",0.45863098837165883,0.021473166856097764,27.87909141900148,0.09784722604672375,"","","","","","","","","",7e-52,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["Contig8079",3.4372444452967867,3.7118248087598347,4.738619571900042,4.228437327648119,"","","","","","","","","",1E-26,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["Contig24395@@KO",2.462609941624732,1.7785598347146123,3.2164540144507234,3.2603910428386347,"","","","","","","","","",2e-34,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["Contig4831",0.29125940335771316,0.07748185168668334,5.788248914817856,0.12357210781061186,"","","","","","","","","",2e-26,"ssa10","dopamine beta-monooxygenase-like protein","","","","","",""]
["Contig7058",0.9694495191760628,0.17193091564102683,4.047313733551663,0,3E-11,"CID8","CTC-interacting domain 8 \\\\ RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins. \\\\ CTC-interacting domain 8 (CID8); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 9 (TAIR:AT3G14450.1); Has 4564 Blast hits to 3628 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2619; Fungi - 543; Plants - 1016; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).","","","","","","",7e-12,"cgl28","RNA binding protein","","","",2e-11,"PHYPADRAFT_127042","hypothetical protein"]
["TRINITY_DN37390_c0_g1_i2@@W-35D-3@@KO",0.8836935426577184,0.1426712239496566,4.926415741365286,0.16252823341938222,3E-11,"CID8","CTC-interacting domain 8 \\\\ RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins. \\\\ CTC-interacting domain 8 (CID8); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 9 (TAIR:AT3G14450.1); Has 4564 Blast hits to 3628 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2619; Fungi - 543; Plants - 1016; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).","","","","","","",6e-12,"cgl28","RNA binding protein","","","",2e-11,"PHYPADRAFT_127042","hypothetical protein"]
["Contig20959@@KO",0.035663749614283397,0,2.256155614886131,0,"","","",4e-49,"AN5200.2","hypothetical protein","","","",1e-18,"ssa14","monooxygenase",8e-59,"BNA4","Kynurenine 3-mono oxygenase, required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; putative therapeutic target for Huntington disease",1e-15,"PHYPADRAFT_98082","hypothetical protein"]
["Contig7475",1.4309286837195756,1.1595510102292792,12.276084658135714,0.1956944520934475,"","","","","","","","","",3E-11,"ssa20","hypothetical protein","","","","","",""]
["TRINITY_DN22370_c0_g2_i1@@W-25D-2@@KO",21.088674605453317,7.736891203846208,17.257132172942587,14.12992127128239,7e-19,"AT4G22310","Uncharacterised protein family (UPF0041) \\\\ Uncharacterised protein family (UPF0041); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G14695.1); Has 886 Blast hits to 886 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 234; Plants - 170; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).",1e-16,"AN8762.2","hypothetical protein","","","",1e-19,"chlredraft_111398","hypothetical protein",2e-21,"FMP43","Highly conserved subunit of the mitochondrial pyruvate carrier; a mitochondrial inner membrane complex comprised of Fmp37p/Mpc1p and either Mpc2p or Fmp43p/Mpc3p mediates mitochondrial pyruvate uptake; more highly expressed in glucose-containing minimal medium than in lactate-containing medium; expression regulated by osmotic and alkaline stresses; protein abundance increases in response to DNA replication stress",1e-20,"PHYPADRAFT_165416","hypothetical protein"]
["Contig15196@@KO",0.22451531492929705,0,8.364141670730708,0,2e-27,"AT4G22310","Uncharacterised protein family (UPF0041) \\\\ Uncharacterised protein family (UPF0041); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G14695.1); Has 886 Blast hits to 886 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 234; Plants - 170; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).",1E-14,"AN8762.2","hypothetical protein","","","",7e-35,"chlredraft_111398","hypothetical protein",5e-23,"FMP43","Highly conserved subunit of the mitochondrial pyruvate carrier; a mitochondrial inner membrane complex comprised of Fmp37p/Mpc1p and either Mpc2p or Fmp43p/Mpc3p mediates mitochondrial pyruvate uptake; more highly expressed in glucose-containing minimal medium than in lactate-containing medium; expression regulated by osmotic and alkaline stresses; protein abundance increases in response to DNA replication stress",3e-29,"PHYPADRAFT_165416","hypothetical protein"]
["Contig13",15.428290461316394,6.655982700629985,16.483936547418306,16.692955750241776,2e-24,"AT4G22310","Uncharacterised protein family (UPF0041) \\\\ Uncharacterised protein family (UPF0041); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G14695.1); Has 886 Blast hits to 886 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 387; Fungi - 234; Plants - 170; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).",1e-16,"AN8762.2","hypothetical protein","","","",1E-25,"chlredraft_111398","hypothetical protein",1e-23,"FMP43","Highly conserved subunit of the mitochondrial pyruvate carrier; a mitochondrial inner membrane complex comprised of Fmp37p/Mpc1p and either Mpc2p or Fmp43p/Mpc3p mediates mitochondrial pyruvate uptake; more highly expressed in glucose-containing minimal medium than in lactate-containing medium; expression regulated by osmotic and alkaline stresses; protein abundance increases in response to DNA replication stress",6e-27,"PHYPADRAFT_165416","hypothetical protein"]
["Contig18744@@KO",4.595760461658792,2.5615969754597434,5.435283981316588,4.668992887320434,"","","","","","","","","",7e-12,"chlredraft_111398","hypothetical protein",1E-10,"MPC2","Highly conserved subunit of the mitochondrial pyruvate carrier; a mitochondrial inner membrane complex comprised of Fmp37p/Mpc1p and either Mpc2p or Fmp43p/Mpc3p mediates mitochondrial pyruvate uptake; more highly expressed in glucose-containing minimal medium than in lactate-containing medium",1e-11,"PHYPADRAFT_165416","hypothetical protein"]
["Contig22204@@KO",0.10699124884285019,0,10.97995732577917,0,1e-12,"AT1G10390","Nucleoporin autopeptidase \\\\ Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink).",4e-15,"AN8241.2","similar to chitinase","","","",1e-19,"vsp3","extracellular matrix protein",6e-18,"DAN4","Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth","","",""]
["TRINITY_DN31621_c0_g1_i1@@W-35D-3@@KO",0.11679637676914914,0.4101316990358726,6.896173766255722,0,4e-13,"AT4G22485","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \\\\ Encodes a Protease inhibitor/seed storage/LTP family protein \\\\ Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2E-14,"AN8241.2","similar to chitinase","","","",2E-16,"vsp3","extracellular matrix protein",2e-17,"DAN4","Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth","","",""]
["TRINITY_DN28725_c0_g1_i1@@W-35D-3@@KO",0,0,3.630766982896224,0,"","","","","","","","","",2E-12,"vsp3","extracellular matrix protein",8e-12,"DAN4","Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth","","",""]
["Contig13516@@KO",0.301611061123116,0,6.642834049397913,0,"","","","","","","","","",1e-12,"vsp3","extracellular matrix protein","","","","","",""]
["Contig22205@@KO",0,0.49242349625342635,11.434109038549131,0,"","","","","","","","","",1E-13,"vsp3","extracellular matrix protein",5e-13,"DAN4","Cell wall mannoprotein with similarity to Tir1p, Tir2p, Tir3p, and Tir4p; expressed under anaerobic conditions, completely repressed during aerobic growth","","",""]
["Contig15306",0.8645205289710596,1.160010776332281,11.116095182833128,13.580123655292043,1E-59,"AT1G05140","Peptidase M50 family protein \\\\ Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).","","","",5e-19,"rsep","zinc metalloprotease RasP",1e-64,"rsep2","intramembrane metalloprotease","","","",6E-65,"PHYPADRAFT_144310","hypothetical protein"]
["Contig420",2.745519236835123,1.2575112424984194,2.6011050270794653,2.148797862914518,8e-11,"AT1G05140","Peptidase M50 family protein \\\\ Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).","","","","","","",4e-13,"rsep2","intramembrane metalloprotease","","","",6e-15,"PHYPADRAFT_144310","hypothetical protein"]
["TRINITY_DN9446_c0_g1_i1@@W-35D-3@@KO",0.2850753669825943,0,1.5028668158369787,0,"","","","","","","","","",2e-13,"rsep3","intramembrane metalloprotease","","","","","",""]
["Contig15542@@KO",0.5022613420388805,0.08016799807287078,6.226418920323264,0,5e-59,"MYB3R-4","myb domain protein 3r-4 \\\\ Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4.  Functions in powdery mildew induced host endoreduplication at the site of infection. \\\\ myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-21,"AN0279.2","similar to FlbD","","","",8e-32,"chlredraft_103798","hypothetical protein",2e-17,"BAS1","Myb-related transcription factor involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes",2e-60,"PHYPADRAFT_135480","hypothetical protein"]
["TRINITY_DN29568_c0_g2_i2@@W-35D-3@@KO",0,0,1.2451424855739497,0,2e-60,"PC-MYB1","Homeodomain-like protein \\\\ Encodes a putative c-myb-like transcription factor with three MYB repeats. \\\\ ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1 (ATMYB3R1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 12611 Blast hits to 8395 proteins in 560 species: Archae - 0; Bacteria - 0; Metazoa - 1244; Fungi - 1015; Plants - 7252; Viruses - 4; Other Eukaryotes - 3096 (source: NCBI BLink).",6e-23,"AN7174.2","hypothetical protein","","","",3E-32,"chlredraft_103798","hypothetical protein",8e-17,"BAS1","Myb-related transcription factor involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes",9e-58,"PHYPADRAFT_121437","hypothetical protein"]
["Contig15891",69.2231344023729,65.77625329735707,127.5414858468479,117.92150149701841,4E-35,"MC4","metacaspase 4 \\\\ metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).",7e-19,"AN5712.2","similar to metacaspase","","","",5e-45,"chlredraft_189175","metacaspase type II",5e-19,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",9e-38,"PHYPADRAFT_123168","hypothetical protein"]
["Contig13440@@WT",20.47238914516863,25.887492763256937,56.442551545480576,46.322038521770736,1e-19,"MC4","metacaspase 4 \\\\ metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).",1e-12,"AN5712.2","similar to metacaspase","","","",2e-22,"chlredraft_189175","metacaspase type II",2e-13,"MCA1","Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that form a continuous beta-sheet, blocking potential dimerization",5e-19,"PHYPADRAFT_123168","hypothetical protein"]
["Contig16967",3.005650112001456,2.1108743631302946,3.450744368201562,3.2062217052813153,1e-30,"SNM1","DNA repair metallo-beta-lactamase family protein \\\\ involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage. \\\\ SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1210 Blast hits to 1152 proteins in 342 species: Archae - 175; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).",5e-20,"AN7589.2","hypothetical protein","","","",1e-23,"chlredraft_174912","hypothetical protein",3e-15,"PSO2","Nuclease required for DNA single- and double-strand break repair; acts at a post-incision step in repair of breaks that result from interstrand cross-links produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation; forms nuclear foci upon DNA replication stress",7e-34,"PHYPADRAFT_226781","hypothetical protein"]
["Contig20595@@KO",0.11250053426574037,0,4.243837498013852,0,9e-54,"AT3G51050","FG-GAP repeat-containing protein \\\\ FG-GAP repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell-matrix adhesion; LOCATED IN: integrin complex, integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 99 Blast hits to 94 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","","","","","","",1e-17,"chlredraft_152723","hypothetical protein","","","",7e-50,"PHYPADRAFT_110865","hypothetical protein"]
["Contig11785",7.883089990871142,4.902564458966333,10.076904076389253,17.095256030013577,1e-18,"AT1G07010","Calcineurin-like metallo-phosphoesterase superfamily protein \\\\ Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G18480.1); Has 774 Blast hits to 772 proteins in 270 species: Archae - 8; Bacteria - 399; Metazoa - 0; Fungi - 31; Plants - 105; Viruses - 3; Other Eukaryotes - 228 (source: NCBI BLink).","","","","","","",3e-18,"chlredraft_189179","protein ser/thr phosphatase","","","",4e-18,"PHYPADRAFT_214162","hypothetical protein"]
["TRINITY_DN29172_c0_g1_i1@@W-35D-3@@KO",0.23808492187557323,0.055735846279233975,1.6735220220309215,0,1e-64,"AT2G04540","Beta-ketoacyl synthase \\\\ Beta-ketoacyl synthase; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I (TAIR:AT5G46290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-54,"AN7489.2","hypothetical protein",7e-65,"fabf","3-oxoacyl-[acyl-carrier-protein] synthase 2",2e-54,"chlredraft_114457","3-ketoacyl-CoA-synthase",8e-50,"CEM1","Mitochondrial beta-keto-acyl synthase with possible role in fatty acid synthesis; required for mitochondrial respiration",7e-64,"PHYPADRAFT_134001","hypothetical protein"]
["Contig2438",5.425070620153612,1.8200820615108702,3.4490034399814298,2.395930560598644,1e-15,"AT2G04540","Beta-ketoacyl synthase \\\\ Beta-ketoacyl synthase; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I (TAIR:AT5G46290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-17,"AN7489.2","hypothetical protein",3e-13,"fabf","3-oxoacyl-[acyl-carrier-protein] synthase 2",1e-17,"chlredraft_114457","3-ketoacyl-CoA-synthase",1E-14,"CEM1","Mitochondrial beta-keto-acyl synthase with possible role in fatty acid synthesis; required for mitochondrial respiration",3e-17,"PHYPADRAFT_134001","hypothetical protein"]
["Contig469",111.30828320457817,117.18111685153346,67.14265244957323,146.46584822013372,"","","",6e-25,"AN8130.2","hypothetical protein",5e-21,"ald","alanine dehydrogenase",2e-123,"chlredraft_139758","NAD(P) transhydrogenase","","","","","",""]
["TRINITY_DN50314_c0_g1_i1@@W-35D-3@@KO",0.2563991466352327,0,1.0813526911584415,0.5128294702419264,"","","","","","",1E-10,"ald","alanine dehydrogenase",4e-11,"chlredraft_139758","NAD(P) transhydrogenase","","","","","",""]
["TRINITY_DN39404_c0_g1_i2@@W-35D-3@@KO",86.67653352302973,96.35292811993835,56.91384821154439,121.13383538936095,"","","","","","",4e-21,"ald","alanine dehydrogenase",3e-95,"chlredraft_139758","NAD(P) transhydrogenase","","","","","",""]
["TRINITY_DN4864_c0_g1_i1@@W-35D-3@@KO",0.05450497582560293,0,1.4558589062095413,0,"","","","","","",6e-62,"ald","alanine dehydrogenase",3e-14,"chlredraft_139758","NAD(P) transhydrogenase","","","","","",""]
["TRINITY_DN39404_c0_g2_i1@@W-35D-3@@KO",15.22732762127782,17.34515310505878,7.758195487037686,19.35044280953734,"","","",3e-13,"AN8130.2","hypothetical protein","","","",5e-23,"chlredraft_139758","NAD(P) transhydrogenase","","","","","",""]
["TRINITY_DN49843_c0_g1_i1@@W-35D-3@@KO",0,0,0.34415933108432506,0,1e-11,"GGH3","gamma-glutamyl hydrolase 3 \\\\ gamma-glutamyl hydrolase 3 (GGH3); FUNCTIONS IN: hydrolase activity, omega peptidase activity, catalytic activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase 2 (TAIR:AT1G78680.1); Has 364 Blast hits to 360 proteins in 88 species: Archae - 0; Bacteria - 9; Metazoa - 192; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).","","","","","","",2e-11,"ggh2","gamma-glutamyl hydrolase","","","",2e-15,"PHYPADRAFT_165556","hypothetical protein"]
["Contig11678@@KO",0.07921655535896586,0.09272325432194317,5.512526470375345,0,1e-38,"GGH1","gamma-glutamyl hydrolase 1 \\\\ The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. \\\\ gamma-glutamyl hydrolase 1 (GGH1); CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase 2 (TAIR:AT1G78680.1); Has 448 Blast hits to 444 proteins in 135 species: Archae - 0; Bacteria - 95; Metazoa - 194; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).","","","","","","",3e-48,"ggh2","gamma-glutamyl hydrolase","","","",2E-45,"PHYPADRAFT_234686","hypothetical protein"]
["Contig15065",14.949175957114917,10.56486798145675,12.292284782162355,10.060748912812318,"","","","","","","","","",6E-11,"chlredraft_115782","hypothetical protein","","","","","",""]
["Contig23176@@KO",1.244816103157922,0.48568719671507576,23.999816773398845,0,3e-17,"AT3G22845","emp24/gp25L/p24 family/GOLD family protein \\\\ emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G07680.1); Has 1821 Blast hits to 1821 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 918; Fungi - 476; Plants - 264; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).",2e-23,"AN1154.2","hypothetical protein","","","",2e-11,"chlredraft_194512","Emp24/gp25L/p24 family protein",2e-25,"EMP24","Component of the p24 complex; binds to GPI anchor proteins and mediates their efficient transport from the ER to the Golgi; integral membrane protein that associates with endoplasmic reticulum-derived COPII-coated vesicles",9e-19,"PHYPADRAFT_231474","hypothetical protein"]
["Contig22772@@KO",0.9379102982977127,0.05489136375985164,5.471909884155648,0,3e-12,"AT4G26580","RING/U-box superfamily protein \\\\ RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G55970.2); Has 9396 Blast hits to 9372 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 691; Plants - 4936; Viruses - 28; Other Eukaryotes - 1352 (source: NCBI BLink).","","","","","","",7e-13,"chlredraft_190155","hypothetical protein","","","",3E-11,"PHYPADRAFT_186213","hypothetical protein"]
["Contig11339",22.064107611439262,12.697839830546275,16.370690670955945,12.013411154380176,"","","","","","","","","",1E-13,"chlredraft_190155","hypothetical protein","","","","","",""]
["Contig3425",11.860026997829141,2.5285441112602625,16.881469358891387,1.7791122090797622,2e-11,"SDIR1","RING/U-box superfamily protein \\\\ Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. \\\\ SALT- AND DROUGHT-INDUCED RING FINGER1 (SDIR1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G04790.1); Has 9775 Blast hits to 9747 proteins in 287 species: Archae - 0; Bacteria - 6; Metazoa - 2690; Fungi - 760; Plants - 4971; Viruses - 89; Other Eukaryotes - 1259 (source: NCBI BLink).","","","","","","",1e-12,"chlredraft_190155","hypothetical protein","","","",1e-11,"PHYPADRAFT_186213","hypothetical protein"]
["Contig8029",26.239812927544712,23.927674823595034,25.72135011167316,32.02681676248189,2e-39,"AT5G36290","Uncharacterized protein family (UPF0016) \\\\ Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 1755 Blast hits to 1667 proteins in 691 species: Archae - 14; Bacteria - 1095; Metazoa - 159; Fungi - 139; Plants - 208; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).",4e-19,"AN4814.2","hypothetical protein","","","",2e-36,"chlredraft_194510","hypothetical protein",1E-25,"GDT1","Protein of unknown function involved in calcium homeostasis; localizes to the cis- and medial-Golgi apparatus; GFP-fusion protein localizes to the vacuole; TMEM165, a human gene which causes Congenital Disorders of Glycosylation is orthologous and functionally complements the null allele; expression pattern and physical interactions suggest a possible role in ribosome biogenesis; expression reduced in a gcr1 null mutant",1e-37,"PHYPADRAFT_141924","hypothetical protein"]
["Contig1248",6.336433353853838,3.1949367001009708,5.8243837302178525,4.029566696059171,5e-18,"AT2G20930","SNARE-like superfamily protein \\\\ SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G80500.1); Has 516 Blast hits to 516 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 97; Plants - 87; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).","","","","","","",1E-13,"chlredraft_127759","hypothetical protein","","","",3e-19,"PHYPADRAFT_110355","hypothetical protein"]
["TRINITY_DN23105_c0_g1_i1@@W-35D-3@@KO",5.894517868491606,3.8447894790545303,4.744252461209154,3.959916864713359,6e-18,"AT2G20930","SNARE-like superfamily protein \\\\ SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G80500.1); Has 516 Blast hits to 516 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 97; Plants - 87; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).","","","","","","",1E-13,"chlredraft_127759","hypothetical protein","","","",4e-19,"PHYPADRAFT_110355","hypothetical protein"]
["TRINITY_DN22435_c0_g1_i4@@W-25D-2@@KO",3.6059463895717885,2.180732626265174,2.9570971651420166,1.763014304539512,1e-17,"AT2G20930","SNARE-like superfamily protein \\\\ SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G80500.1); Has 516 Blast hits to 516 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 97; Plants - 87; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).","","","","","","",2E-14,"chlredraft_127759","hypothetical protein","","","",1e-17,"PHYPADRAFT_110355","hypothetical protein"]
["TRINITY_DN13171_c0_g2_i1@@W-35D-5@@WT",5.406979211809484,2.7439934093144682,4.837150388983615,4.033423174910323,3e-44,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2E-41,"AN3747.2","hypothetical protein","","","",9e-49,"chlredraft_190175","hypothetical protein",6E-37,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",4E-50,"PHYPADRAFT_179254","hypothetical protein"]
["Contig4921@@KO",0.6467381459903632,0,1.7615692627422497,0,2E-107,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",9e-93,"AN3747.2","hypothetical protein","","","",7e-100,"chlredraft_190175","hypothetical protein",9e-88,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",4e-112,"PHYPADRAFT_191544","hypothetical protein"]
["Contig11335",5.6854907722708825,4.5524290749897105,4.46593598588971,5.938210378272392,8e-54,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1E-51,"AN3747.2","hypothetical protein","","","",5e-57,"chlredraft_190175","hypothetical protein",4e-46,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",1e-57,"PHYPADRAFT_179254","hypothetical protein"]
["Contig6968",11.646962881439178,9.069992406581212,9.95777733262414,14.199065588208715,2e-71,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-67,"AN3747.2","hypothetical protein","","","",3e-76,"chlredraft_190175","hypothetical protein",6e-61,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",6e-77,"PHYPADRAFT_179254","hypothetical protein"]
["Contig2270",5.094990918273498,2.306715945289206,4.223253022873373,3.5570967026320197,4E-50,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-47,"AN3747.2","hypothetical protein","","","",2e-56,"chlredraft_190175","hypothetical protein",1e-40,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",6E-57,"PHYPADRAFT_179254","hypothetical protein"]
["Contig13570@@KO",0.2134554471987898,0,5.701516406091553,0,2e-59,"PGGT-I","Prenyltransferase family protein \\\\ encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. \\\\ PGGT-I; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1518 Blast hits to 1317 proteins in 251 species: Archae - 0; Bacteria - 20; Metazoa - 603; Fungi - 437; Plants - 177; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).",1e-29,"AN3747.2","hypothetical protein","","","",1e-31,"chlredraft_190175","hypothetical protein",1e-28,"RAM1","Beta subunit of the CAAX farnesyltransferase (FTase) that prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit",5e-67,"PHYPADRAFT_118171","hypothetical protein"]
["Contig20593@@KO",9.053065307923955,5.422696020046315,7.6182596412413,8.614394920107637,8e-67,"RGTB1","RAB geranylgeranyl transferase beta subunit 1 \\\\ RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-63,"AN3747.2","hypothetical protein","","","",2e-72,"chlredraft_190175","hypothetical protein",9e-56,"BET2","Beta subunit of Type II geranylgeranyltransferase required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p",1e-72,"PHYPADRAFT_179254","hypothetical protein"]
["TRINITY_DN53272_c0_g1_i1@@W-35D-3@@KO",0,0,0.6508141196786916,0,"","","","","","","","","",2e-28,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN30758_c1_g1_i1@@W-35D-3@@KO",0.17734565804101363,0,1.0803691962142319,0,"","","","","","","","","",5e-11,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN30758_c0_g1_i1@@W-35D-3@@KO",0,0,2.583499621510235,0,"","","","","","","","","",2e-27,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN33989_c1_g1_i1@@W-35D-3@@KO",0.08508876933010177,0.024899175313747135,2.392388869982348,0.05672929502267096,"","","","","","","","","",6e-27,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN1048_c0_g1_i1@@W-35D-3@@KO",0.06146305784589266,0,1.641713234661823,0,"","","","","","","","","",7e-20,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN28896_c0_g1_i1@@W-35D-3@@KO",0.1096073923643027,0,1.9004211292337645,0,"","","","","","","","","",2e-15,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN16168_c0_g1_i1@@W-35D-3@@KO",0,0,1.059412201772618,0,"","","","","","","","","",1e-24,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN7788_c0_g1_i1@@W-35D-3@@KO",0,0,0.7022040530481329,0,"","","","","","","","","",2E-14,"chlredraft_190174","hypothetical protein","","","","","",""]
["TRINITY_DN32074_c0_g1_i1@@W-35D-3@@KO",0.07477386674953292,0,3.1535565971661192,0,"","","","","","","","","",1e-28,"chlredraft_190174","hypothetical protein","","","","","",""]
["Contig2780",32.64520202474965,29.18602701302764,18.534403194169826,28.382562025553163,6e-32,"MAM1","methylthioalkylmalate synthase 1 \\\\ Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. \\\\ methylthioalkylmalate synthase 1 (MAM1); FUNCTIONS IN: 2-(2'-methylthio)ethylmalate synthase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1E-13,"AN1990.2","HOSM_PENCH Homocitrate synthase, mitochondrial precursor",8e-28,"leua","2-isopropylmalate synthase",4e-24,"leu2","isopropylmalate synthase",4E-14,"LYS21","Homocitrate synthase isozyme; catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; LYS21 has a paralog, LYS20, that arose from the whole genome duplication",6e-30,"PHYPADRAFT_124018","hypothetical protein"]
["Contig147",101.11907002714169,120.18015069326309,70.98650062795936,143.76823330283594,1e-144,"MAML-4","methylthioalkylmalate synthase-like 4 \\\\ Encodes an active Arabidopsis isopropylmalate synthase IPMS1.  Involved in leucine biosynthesis.  Do not participate in the chain elongation of glucosinolates.  Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). \\\\ methylthioalkylmalate synthase-like 4 (MAML-4); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 1 (TAIR:AT1G74040.1); Has 16947 Blast hits to 16939 proteins in 2437 species: Archae - 505; Bacteria - 8907; Metazoa - 233; Fungi - 482; Plants - 265; Viruses - 0; Other Eukaryotes - 6555 (source: NCBI BLink).",2e-39,"AN1990.2","HOSM_PENCH Homocitrate synthase, mitochondrial precursor",1E-125,"leua","2-isopropylmalate synthase",1E-100,"leu2","isopropylmalate synthase",2E-41,"LYS20","Homocitrate synthase isozyme; catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; LYS20 has a paralog, LYS21, that arose from the whole genome duplication",2e-143,"PHYPADRAFT_124018","hypothetical protein"]
["Contig23695@@KO",0.3661076529504892,0,8.859869997624655,0,9e-37,"AT1G14240","GDA1/CD39 nucleoside phosphatase family protein \\\\ GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1471 Blast hits to 1463 proteins in 237 species: Archae - 0; Bacteria - 39; Metazoa - 609; Fungi - 317; Plants - 332; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).",1e-28,"AN0210.2","hypothetical protein","","","",9e-24,"chlredraft_170567","hypothetical protein",6e-31,"YND1","Apyrase with wide substrate specificity, helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity",4e-36,"PHYPADRAFT_31384","hypothetical protein"]
["Contig1678@@KO",14.260449803043368,8.222125916934653,13.979792359816896,16.02458545164811,2e-27,"APY1","apyrase 1 \\\\ Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination. \\\\ apyrase 1 (APY1); CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: apyrase 2 (TAIR:AT5G18280.1); Has 1435 Blast hits to 1431 proteins in 229 species: Archae - 0; Bacteria - 35; Metazoa - 605; Fungi - 313; Plants - 348; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).",1e-15,"AN1082.2","hypothetical protein","","","",2E-16,"chlredraft_170567","hypothetical protein",4e-15,"GDA1","Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate",1e-32,"PHYPADRAFT_175090","hypothetical protein"]
["TRINITY_DN18390_c0_g1_i1@@W-25D-4@@WT",12.08280978518534,9.962782522413073,15.312726501582931,17.30188950792404,4e-29,"APY1","apyrase 1 \\\\ Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination. \\\\ apyrase 1 (APY1); CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: apyrase 2 (TAIR:AT5G18280.1); Has 1435 Blast hits to 1431 proteins in 229 species: Archae - 0; Bacteria - 35; Metazoa - 605; Fungi - 313; Plants - 348; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).",2e-25,"AN1082.2","hypothetical protein","","","",3E-24,"chlredraft_170567","hypothetical protein",3e-26,"GDA1","Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate",2e-29,"PHYPADRAFT_175090","hypothetical protein"]
["Contig13171@@KO",0.1258720574621767,0,1.7252954702070413,0,6e-23,"AT1G14230","GDA1/CD39 nucleoside phosphatase family protein \\\\ GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14250.1); Has 1467 Blast hits to 1458 proteins in 234 species: Archae - 0; Bacteria - 41; Metazoa - 609; Fungi - 317; Plants - 334; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).","","","","","","",2e-11,"chlredraft_170567","hypothetical protein",8e-12,"YND1","Apyrase with wide substrate specificity, helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity",2e-17,"PHYPADRAFT_31384","hypothetical protein"]
["Contig17514",1.0215667374779016,0.19929123816936312,3.111633087721147,1.2486574789518547,4e-17,"KP1","kinesin-like protein 1 \\\\ kinesin-like protein 1 (KP1); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (TAIR:AT2G47500.1); Has 10649 Blast hits to 10123 proteins in 338 species: Archae - 0; Bacteria - 46; Metazoa - 4773; Fungi - 1367; Plants - 1910; Viruses - 0; Other Eukaryotes - 2553 (source: NCBI BLink).",2E-16,"AN5343.2","similar to kinesin (KINA protein)","","","",9e-20,"chlredraft_102475","hypothetical protein",1E-14,"CIN8","Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation",2e-17,"PHYPADRAFT_130773","hypothetical protein"]
["TRINITY_DN34236_c0_g1_i1@@W-35D-3@@KO",0.15257554852589553,0,4.7188606874731045,0,"","","","","","","","","",1e-34,"chlredraft_123392","hypothetical protein","","","","","",""]
["Contig11886@@KO",0.42100816528969076,0.037907040444023106,3.414585291587754,0,8e-64,"AT3G13235","ubiquitin family protein \\\\ ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); Has 8885 Blast hits to 4319 proteins in 604 species: Archae - 0; Bacteria - 8; Metazoa - 3791; Fungi - 1215; Plants - 2329; Viruses - 83; Other Eukaryotes - 1459 (source: NCBI BLink).",7e-54,"AN6741.2","hypothetical protein","","","",1E-50,"chlredraft_182542","DNA damage inducible protein",2e-43,"DDI1","DNA damage-inducible v-SNARE binding protein with a role in suppression of protein secretion; may play a role in S-phase checkpoint control; has ubiquitin-associated (UBA), ubiquitin-like (UBL), and retroviral-like proteinase (RVP) domains","","",""]
["Contig15611",26.316902502070246,9.399415837659438,38.505745783235504,14.285672560797344,2e-27,"AT3G13235","ubiquitin family protein \\\\ ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); Has 8885 Blast hits to 4319 proteins in 604 species: Archae - 0; Bacteria - 8; Metazoa - 3791; Fungi - 1215; Plants - 2329; Viruses - 83; Other Eukaryotes - 1459 (source: NCBI BLink).",2e-18,"AN6741.2","hypothetical protein","","","",9e-24,"chlredraft_182542","DNA damage inducible protein",4e-25,"DDI1","DNA damage-inducible v-SNARE binding protein with a role in suppression of protein secretion; may play a role in S-phase checkpoint control; has ubiquitin-associated (UBA), ubiquitin-like (UBL), and retroviral-like proteinase (RVP) domains","","",""]
["Contig1574",32.60278434845998,29.365935691246122,17.293028376646888,18.010612846325095,3e-46,"KAK","HEAT repeat ;HECT-domain (ubiquitin-transferase) \\\\ encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. \\\\ KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",9e-35,"AN1746.2","hypothetical protein","","","",6e-38,"chlredraft_113116","hypothetical protein",2e-22,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",2e-44,"PHYPADRAFT_147629","hypothetical protein"]
["TRINITY_DN30853_c0_g1_i1@@W-25D-2@@KO",18.312698574262843,11.9754658602743,9.941185678092014,8.426073101336096,2E-41,"KAK","HEAT repeat ;HECT-domain (ubiquitin-transferase) \\\\ encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. \\\\ KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",4e-32,"AN1746.2","hypothetical protein","","","",2e-38,"chlredraft_113116","hypothetical protein",6e-23,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",5e-45,"PHYPADRAFT_147629","hypothetical protein"]
["Contig11948",68.66996973569081,33.653857524340545,27.068072458389857,28.543116513527952,2e-40,"UPL4","ubiquitin-protein ligase 4 \\\\ encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. \\\\ ubiquitin-protein ligase 4 (UPL4); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: HEAT repeat ;HECT-domain (ubiquitin-transferase) (TAIR:AT4G38600.1); Has 5635 Blast hits to 5003 proteins in 272 species: Archae - 0; Bacteria - 11; Metazoa - 3196; Fungi - 992; Plants - 513; Viruses - 0; Other Eukaryotes - 923 (source: NCBI BLink).",8e-42,"AN1746.2","hypothetical protein","","","",2e-43,"chlredraft_113116","hypothetical protein",1e-43,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",3e-38,"PHYPADRAFT_188237","hypothetical protein"]
["TRINITY_DN24471_c0_g3_i1@@W-35D-3@@KO",20.280831513280813,14.284612014117789,10.884426412356063,10.013998258326259,6e-41,"KAK","HEAT repeat ;HECT-domain (ubiquitin-transferase) \\\\ encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. \\\\ KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",1e-31,"AN1746.2","hypothetical protein","","","",4e-38,"chlredraft_113116","hypothetical protein",1E-22,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",1e-44,"PHYPADRAFT_147629","hypothetical protein"]
["Contig6367@@WT",19.162814411336285,14.416248438579416,9.93004564189565,8.500695304345191,8E-41,"KAK","HEAT repeat ;HECT-domain (ubiquitin-transferase) \\\\ encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. \\\\ KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",1e-31,"AN1746.2","hypothetical protein","","","",5e-38,"chlredraft_113116","hypothetical protein",2e-22,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",2e-44,"PHYPADRAFT_147629","hypothetical protein"]
["TRINITY_DN20967_c1_g1_i1@@W-35D-3@@KO",0,0,1.1729692221166663,0,2e-38,"KAK","HEAT repeat ;HECT-domain (ubiquitin-transferase) \\\\ encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. \\\\ KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",2e-26,"AN1746.2","hypothetical protein","","","",1e-39,"chlredraft_113116","hypothetical protein",3E-24,"UFD4","Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress",1e-39,"PHYPADRAFT_147629","hypothetical protein"]
["Contig6976",74.44631552555195,77.86911330856097,104.70106492695105,86.34197701580813,2e-15,"BI1","BAX inhibitor 1 \\\\ Encodes BI-1, a homolog of mammalian Bax inhibitor 1.  Functions as an attenuator of biotic and abiotic types of cell death.  Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta. \\\\ BAX inhibitor 1 (BI1); CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G17580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",7e-17,"chlredraft_139760","hypothetical protein","","","",1E-10,"PHYPADRAFT_185792","hypothetical protein"]
["TRINITY_DN18831_c0_g1_i1@@W-35D-3@@KO",0,0.07153684078152739,3.608576117462444,0,1e-28,"BI1","BAX inhibitor 1 \\\\ Encodes BI-1, a homolog of mammalian Bax inhibitor 1.  Functions as an attenuator of biotic and abiotic types of cell death.  Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta. \\\\ BAX inhibitor 1 (BI1); CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G17580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",5e-24,"chlredraft_139760","hypothetical protein","","","",5e-27,"PHYPADRAFT_185792","hypothetical protein"]
["TRINITY_DN14353_c0_g1_i1@@W-35D-3@@KO",0.05068006524135009,0,0.7837172135920244,0,1e-23,"FZL","FZO-like \\\\ A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. \\\\ FZO-like (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding; INVOLVED IN: vegetative to reproductive phase transition of meristem, thylakoid membrane organization; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), GTP-binding protein, HSR1-related (InterPro:IPR002917); Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53; Bacteria - 3501; Metazoa - 428; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).","","","","","","",8e-24,"chlredraft_190184","hypothetical protein","","","",3E-28,"PHYPADRAFT_149030","hypothetical protein"]
["Contig3807",4.6472663598671975,2.971655994768691,4.1135071588192025,5.278697519577273,7e-12,"FZL","FZO-like \\\\ A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. \\\\ FZO-like (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding; INVOLVED IN: vegetative to reproductive phase transition of meristem, thylakoid membrane organization; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), GTP-binding protein, HSR1-related (InterPro:IPR002917); Has 4318 Blast hits to 3768 proteins in 1124 species: Archae - 53; Bacteria - 3501; Metazoa - 428; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).","","","","","","",2e-11,"chlredraft_190184","hypothetical protein","","","",4e-11,"PHYPADRAFT_192506","hypothetical protein"]
["Contig3177",33.04111006268052,48.86235884982774,11.186012248926554,29.589459568412195,4e-32,"MST1","mercaptopyruvate sulfurtransferase 1 \\\\ encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. \\\\ mercaptopyruvate sulfurtransferase 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: rhodanese homologue 2 (TAIR:AT1G16460.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2E-19,"AN3365.2","hypothetical protein","","","",7e-33,"tst","thiosulfate sulfurtransferase",1e-12,"TUM1","Rhodanese domain sulfur transferase, accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized",5E-36,"PHYPADRAFT_212228","hypothetical protein"]
["Contig24779@@KO",1.0781032060432656,0.048535521640289875,5.712715556926988,0,1E-41,"MST1","mercaptopyruvate sulfurtransferase 1 \\\\ encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. \\\\ mercaptopyruvate sulfurtransferase 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: rhodanese homologue 2 (TAIR:AT1G16460.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-25,"AN3365.2","hypothetical protein","","","",2e-38,"tst","thiosulfate sulfurtransferase",5e-29,"TUM1","Rhodanese domain sulfur transferase, accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized",1e-40,"PHYPADRAFT_212228","hypothetical protein"]
["Contig7345@@KO",16.68277881869547,15.56662777394767,8.28308879591062,12.211212166838058,4e-18,"AT1G53530","Peptidase S24/S26A/S26B/S26C family protein \\\\ Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 5097 Blast hits to 5089 proteins in 1522 species: Archae - 0; Bacteria - 3881; Metazoa - 248; Fungi - 243; Plants - 276; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).",3e-15,"AN6841.2","hypothetical protein","","","",9e-18,"imp1","mitochondrial inner membrane signal peptidase",5e-17,"IMP2","Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p",6e-20,"PHYPADRAFT_187631","hypothetical protein"]
["TRINITY_DN25298_c0_g1_i5@@W-25D-4@@WT",17.644715680458265,15.79615287451934,8.285635895855126,12.926779460064287,6e-16,"AT1G53530","Peptidase S24/S26A/S26B/S26C family protein \\\\ Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 5097 Blast hits to 5089 proteins in 1522 species: Archae - 0; Bacteria - 3881; Metazoa - 248; Fungi - 243; Plants - 276; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).",6e-14,"AN6841.2","hypothetical protein","","","",1e-15,"imp1","mitochondrial inner membrane signal peptidase",3e-14,"IMP2","Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p",9e-18,"PHYPADRAFT_187631","hypothetical protein"]
["Contig14424",18.60445017934807,17.28268085855263,9.011413117536994,13.508779625828897,2e-18,"AT1G29960","Peptidase S24/S26A/S26B/S26C family protein \\\\ Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G23465.1); Has 5579 Blast hits to 5574 proteins in 1487 species: Archae - 0; Bacteria - 4203; Metazoa - 246; Fungi - 240; Plants - 281; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).",3e-15,"AN6841.2","hypothetical protein","","","",3e-21,"imp1","mitochondrial inner membrane signal peptidase",8e-19,"IMP2","Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p",3e-21,"PHYPADRAFT_187631","hypothetical protein"]
["Contig14423",15.761204456041687,15.969001152306024,7.489514753684388,11.973130611081842,4e-18,"AT1G53530","Peptidase S24/S26A/S26B/S26C family protein \\\\ Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G29960.1); Has 5097 Blast hits to 5089 proteins in 1522 species: Archae - 0; Bacteria - 3881; Metazoa - 248; Fungi - 243; Plants - 276; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).",3e-15,"AN6841.2","hypothetical protein","","","",1e-17,"imp1","mitochondrial inner membrane signal peptidase",2e-17,"IMP2","Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p",3e-20,"PHYPADRAFT_187631","hypothetical protein"]
["Contig5315",48.537596061485566,23.78979033683526,45.79901201236059,31.82986690955923,4e-139,"RHL2","Spo11/DNA topoisomerase VI, subunit A protein \\\\ Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication \\\\ ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).",4e-17,"AN8259.2","hypothetical protein","","","",4e-139,"spo11a","topoisomerase","","","",2e-141,"PHYPADRAFT_126981","hypothetical protein"]
["Contig12228",105.5221980167696,102.5079437953769,101.0219978897563,121.22568294304178,6e-172,"ERF1-3","eukaryotic release factor 1-3 \\\\ eukaryotic release factor 1-3 (ERF1-3); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, leaf, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-2 (TAIR:AT1G12920.1); Has 1175 Blast hits to 1170 proteins in 381 species: Archae - 342; Bacteria - 2; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).",3e-163,"AN8853.2","ERF1_PODAN Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1)","","","",9e-168,"erf1","eukaryotic release factor 1",5e-160,"Z36012","Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p",2e-172,"PHYPADRAFT_165521","hypothetical protein"]
["Contig7422",0.49806271013050946,0.0971640232070937,7.274156896270802,0.07379155425362756,7e-177,"ERF1-3","eukaryotic release factor 1-3 \\\\ eukaryotic release factor 1-3 (ERF1-3); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, leaf, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-2 (TAIR:AT1G12920.1); Has 1175 Blast hits to 1170 proteins in 381 species: Archae - 342; Bacteria - 2; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).",4e-173,"AN8853.2","ERF1_PODAN Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1)","","","",0,"erf1","eukaryotic release factor 1",4E-159,"Z36012","Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p",1E-175,"PHYPADRAFT_233066","hypothetical protein"]
["TRINITY_DN53537_c0_g1_i1@@W-35D-3@@KO",0,0,0.7931797083584055,0,4E-50,"ERF1-2","eukaryotic release factor 1-2 \\\\ Encodes a eukaryotic release factor one homolog. \\\\ eukaryotic release factor 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1); Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310; Bacteria - 0; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).",1E-51,"AN8853.2","ERF1_PODAN Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1)","","","",3e-54,"erf1","eukaryotic release factor 1",2e-54,"Z36012","Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p",1E-50,"PHYPADRAFT_151110","hypothetical protein"]
["TRINITY_DN4677_c0_g1_i1@@W-35D-3@@KO",0,0,0.7149788920413795,0,8e-40,"ERF1-2","eukaryotic release factor 1-2 \\\\ Encodes a eukaryotic release factor one homolog. \\\\ eukaryotic release factor 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1); Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310; Bacteria - 0; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).",5e-39,"AN8853.2","ERF1_PODAN Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1)","","","",2e-43,"erf1","eukaryotic release factor 1",7e-38,"Z36012","Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p",2e-39,"PHYPADRAFT_233066","hypothetical protein"]
["Contig12778",60.45286073382653,38.125760091939796,16.196719858377488,39.3152387659415,3e-67,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",1E-54,"AN3624.2","hypothetical protein",5e-63,"copa","copper-exporting P-type ATPase A",2E-66,"ctp3","heavy metal transporting ATPase",1E-46,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",2e-75,"PHYPADRAFT_192723","hypothetical protein"]
["Contig1619",9.85604458591145,6.013100357223246,6.575044737493025,3.1014680016613485,2E-87,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",3E-51,"AN3624.2","hypothetical protein",2e-60,"copa","copper-exporting P-type ATPase A",1e-101,"ctp3","heavy metal transporting ATPase",3e-66,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",3E-79,"PHYPADRAFT_81365","hypothetical protein"]
["Contig24204@@KO",0.150805530561558,0.058839466489678555,0.8480213680082441,0.13405751039580133,2e-40,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",5e-30,"AN3624.2","hypothetical protein",4e-42,"copa","copper-exporting P-type ATPase A",6e-28,"ctp3","heavy metal transporting ATPase",5e-29,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",4e-36,"PHYPADRAFT_81365","hypothetical protein"]
["Contig18339@@KO",0.32777198019178766,0,3.2255174827040753,0,5e-40,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",6e-27,"AN3624.2","hypothetical protein",1e-36,"copa","copper-exporting P-type ATPase A",4e-34,"ctp3","heavy metal transporting ATPase",2e-31,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",6e-40,"PHYPADRAFT_81365","hypothetical protein"]
["Contig3268",41.54942621458868,72.71275986055014,18.767112614734636,22.261091087759926,5e-14,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).","","","","","","",1e-19,"ctp3","heavy metal transporting ATPase","","","",3e-15,"PHYPADRAFT_192723","hypothetical protein"]
["Contig14702@@KO",25.897088169997332,26.14273036753761,6.868403939009054,10.780203208459143,6e-25,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",4e-18,"AN3624.2","hypothetical protein",5e-18,"copa","copper-exporting P-type ATPase A",3e-25,"ctp1","heavy metal transporting ATPase",2e-17,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",1E-25,"PHYPADRAFT_81365","hypothetical protein"]
["TRINITY_DN9178_c0_g1_i1@@W-35D-3@@KO",0.045325790566270216,0.053053995935254096,1.5929969038160445,0,8e-87,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",5e-63,"AN3624.2","hypothetical protein",1e-69,"copa","copper-exporting P-type ATPase A",2e-77,"ctp1","heavy metal transporting ATPase",5e-63,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",1e-82,"PHYPADRAFT_192723","hypothetical protein"]
["Contig3432@@KO",27.650735595284115,50.887751451497735,12.317861760389365,15.737537006315499,7e-58,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",7e-44,"AN3624.2","hypothetical protein",1E-51,"copa","copper-exporting P-type ATPase A",4e-58,"ctp1","heavy metal transporting ATPase",3e-39,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",4e-59,"PHYPADRAFT_81365","hypothetical protein"]
["TRINITY_DN22047_c1_g1_i1@@W-35D-5@@WT",4.877790006300021,3.3132676889935992,3.5885309780078622,1.752404154558588,4e-65,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",2E-51,"AN3624.2","hypothetical protein",1e-60,"copa","copper-exporting P-type ATPase A",2e-76,"ctp1","heavy metal transporting ATPase",3e-46,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",2E-79,"PHYPADRAFT_81365","hypothetical protein"]
["Contig11842",5.133812975531448,3.690465417589106,4.009563293568579,1.590368717752009,5e-65,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",2E-51,"AN3624.2","hypothetical protein",2e-60,"copa","copper-exporting P-type ATPase A",2e-76,"ctp1","heavy metal transporting ATPase",4e-46,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",3E-79,"PHYPADRAFT_81365","hypothetical protein"]
["Contig17670@@KO",16.698207702796555,13.47000195407815,6.2648241211901645,10.346352659561253,3E-49,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",7e-40,"AN3624.2","hypothetical protein",1E-46,"copa","copper-exporting P-type ATPase A",7e-50,"ctp1","heavy metal transporting ATPase",1e-32,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",3e-53,"PHYPADRAFT_192723","hypothetical protein"]
["Contig13611@@WT",20.361137731738943,13.290018688133099,7.4868138894860365,12.407267701908463,4e-65,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",2e-53,"AN3624.2","hypothetical protein",1E-61,"copa","copper-exporting P-type ATPase A",7e-54,"ctp1","heavy metal transporting ATPase",9e-40,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",7e-71,"PHYPADRAFT_192723","hypothetical protein"]
["Contig5410@@WT",4.580318791703039,3.5101980938660033,3.6559601934651176,1.7182121026939552,5e-65,"RAN1","copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) \\\\ ATP dependent copper transporter vital for ethylene response pathway \\\\ RESPONSIVE-TO-ANTAGONIST 1 (RAN1); CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), Copper ion-binding (InterPro:IPR006122), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 5 (TAIR:AT1G63440.1); Has 47831 Blast hits to 34622 proteins in 3461 species: Archae - 1084; Bacteria - 31583; Metazoa - 5562; Fungi - 2713; Plants - 1975; Viruses - 3; Other Eukaryotes - 4911 (source: NCBI BLink).",2E-51,"AN3624.2","hypothetical protein",1e-60,"copa","copper-exporting P-type ATPase A",2e-76,"ctp1","heavy metal transporting ATPase",3e-46,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",2E-79,"PHYPADRAFT_81365","hypothetical protein"]
["Contig5122@@WT",16.423182330163524,24.181131774572304,8.216536056991874,14.451618018144789,2e-57,"HMA5","heavy metal atpase 5 \\\\ The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity,  which is especially dramatic in roots where  HMA5 is mostly expressed. \\\\ heavy metal atpase 5 (HMA5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: detoxification of copper ion, response to copper ion; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (TAIR:AT5G44790.1); Has 47061 Blast hits to 34034 proteins in 3459 species: Archae - 1020; Bacteria - 31793; Metazoa - 4958; Fungi - 2589; Plants - 1873; Viruses - 3; Other Eukaryotes - 4825 (source: NCBI BLink).",2e-43,"AN3624.2","hypothetical protein",2E-51,"copa","copper-exporting P-type ATPase A",9e-58,"ctp1","heavy metal transporting ATPase",7E-39,"CCC2","Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism",1E-58,"PHYPADRAFT_81365","hypothetical protein"]
["TRINITY_DN38271_c0_g1_i1@@W-25D-2@@KO",0.4237795186440521,0,0,0,9e-20,"HMA4","heavy metal atpase 4 \\\\ Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and  Cd resistance, suggesting a role in Zn and Cd transport. \\\\ heavy metal atpase 4 (HMA4); FUNCTIONS IN: zinc ion transmembrane transporter activity, protein binding, cadmium ion transmembrane transporter activity, cadmium-transporting ATPase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating (InterPro:IPR006404), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: heavy metal atpase 2 (TAIR:AT4G30110.1); Has 40067 Blast hits to 31648 proteins in 3107 species: Archae - 784; Bacteria - 26302; Metazoa - 4194; Fungi - 2461; Plants - 1970; Viruses - 7; Other Eukaryotes - 4349 (source: NCBI BLink).",2e-11,"AN3624.2","hypothetical protein",1e-16,"zosa","zinc-transporting ATPase",8e-12,"ctp2","heavy metal transporting ATPase","","","",4e-18,"PHYPADRAFT_125099","hypothetical protein"]
["Contig24845@@KO",0.2903280119353724,0,1.4285206405811683,0,1e-16,"AT5G30495","Fcf2 pre-rRNA processing protein \\\\ Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT1G54770.1); Has 334 Blast hits to 334 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).","","","","","","",1e-17,"chlredraft_147368","hypothetical protein",2e-18,"FCF2","Essential nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p; member of a transcriptionally co-regulated set of genes called the RRB regulon",1E-27,"PHYPADRAFT_18400","hypothetical protein"]
["TRINITY_DN5244_c0_g1_i1@@W-35D-3@@KO",0,0,0.9146576817105936,0,1E-22,"PIS1","phosphatidylinositol synthase 1 \\\\ phosphatidylinositol synthase 1 \\\\ phosphatidylinositol synthase 1 (PIS1); CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (TAIR:AT4G38570.1); Has 2907 Blast hits to 2907 proteins in 1088 species: Archae - 25; Bacteria - 1785; Metazoa - 167; Fungi - 194; Plants - 81; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).",1e-17,"AN0913.2","hypothetical protein","","","",1E-22,"pis1","phosphatidylinositol synthase",2E-19,"PIS1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL51/YPR100W",3e-21,"PHYPADRAFT_142350","hypothetical protein"]
["Contig5940",27.180640444667716,21.978502049444597,18.459455030886524,16.633287161079046,9e-27,"PIS1","phosphatidylinositol synthase 1 \\\\ phosphatidylinositol synthase 1 \\\\ phosphatidylinositol synthase 1 (PIS1); CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (TAIR:AT4G38570.1); Has 2907 Blast hits to 2907 proteins in 1088 species: Archae - 25; Bacteria - 1785; Metazoa - 167; Fungi - 194; Plants - 81; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).",5e-24,"AN0913.2","hypothetical protein","","","",6e-26,"pis1","phosphatidylinositol synthase",2e-20,"PIS1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene MRPL51/YPR100W",9e-26,"PHYPADRAFT_142350","hypothetical protein"]
["Contig17520",0.7835276935806536,0.3057072993178806,1.0681196993214341,1.1080863256551579,1e-15,"CYP706A7","cytochrome P450, family 706, subfamily A, polypeptide 7 \\\\ member of CYP706A \\\\ cytochrome P450, family 706, subfamily A, polypeptide 7 (CYP706A7); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 3 (TAIR:AT5G44620.1); Has 32880 Blast hits to 32631 proteins in 1648 species: Archae - 51; Bacteria - 3420; Metazoa - 11813; Fungi - 6994; Plants - 9311; Viruses - 3; Other Eukaryotes - 1288 (source: NCBI BLink).",7e-15,"AN3281.2","hypothetical protein","","","",9e-17,"cyp770a1","cytochrome P450","","","",1E-14,"PHYPADRAFT_168494","hypothetical protein"]
["Contig7914",2.9477180803642398,3.2777985788025696,3.384233422329196,2.8823884661519004,3E-11,"CYP72A10","cytochrome P450, family 72, subfamily A, polypeptide 10 \\\\ putative cytochrome P450 \\\\ cytochrome P450, family 72, subfamily A, polypeptide 10 (CYP72A10); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 15 (TAIR:AT3G14690.1); Has 32136 Blast hits to 32015 proteins in 1625 species: Archae - 62; Bacteria - 4981; Metazoa - 11360; Fungi - 6183; Plants - 8149; Viruses - 3; Other Eukaryotes - 1398 (source: NCBI BLink).",3e-17,"AN8895.2","hypothetical protein","","","",7e-11,"cyp770a1","cytochrome P450","","","",2e-11,"PHYPADRAFT_133201","hypothetical protein"]
["Contig19539@@KO",0.5173905167922905,0.30280370217374875,0.45459851941735474,0.17247399098683694,8e-12,"CYP71A16","cytochrome P450, family 71, subfamily A, polypeptide 16 \\\\ putative cytochrome P450 \\\\ cytochrome P450, family 71, subfamily A, polypeptide 16 (CYP71A16); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 20 (TAIR:AT4G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",7e-14,"cyp770a1","cytochrome P450","","","","","",""]
["Contig9910",3.0590508846702664,1.2353172565736326,2.0427247272089395,2.223045457424762,5e-35,"AT1G48650","DEA(D/H)-box RNA helicase family protein \\\\ DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 12828 Blast hits to 8781 proteins in 1491 species: Archae - 14; Bacteria - 5237; Metazoa - 2858; Fungi - 1715; Plants - 974; Viruses - 58; Other Eukaryotes - 1972 (source: NCBI BLink).",1e-36,"AN2138.2","hypothetical protein","","","",4e-30,"chlredraft_122089","hypothetical protein",1E-25,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",6e-39,"PHYPADRAFT_175128","hypothetical protein"]
["Contig15434",7.658750647259352,4.742650382478547,6.067956818837755,5.178287512411401,1E-35,"AT1G48650","DEA(D/H)-box RNA helicase family protein \\\\ DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 12828 Blast hits to 8781 proteins in 1491 species: Archae - 14; Bacteria - 5237; Metazoa - 2858; Fungi - 1715; Plants - 974; Viruses - 58; Other Eukaryotes - 1972 (source: NCBI BLink).",3E-37,"AN2138.2","hypothetical protein","","","",5e-30,"chlredraft_122089","hypothetical protein",2e-26,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",1e-39,"PHYPADRAFT_175128","hypothetical protein"]
["Contig7772@@KO",6.921287709509645,2.6022651171804982,6.014958919067188,2.3491859178942844,5E-36,"AT1G48650","DEA(D/H)-box RNA helicase family protein \\\\ DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 12828 Blast hits to 8781 proteins in 1491 species: Archae - 14; Bacteria - 5237; Metazoa - 2858; Fungi - 1715; Plants - 974; Viruses - 58; Other Eukaryotes - 1972 (source: NCBI BLink).",1e-37,"AN2138.2","hypothetical protein","","","",3e-30,"chlredraft_122089","hypothetical protein",1E-26,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",7e-40,"PHYPADRAFT_175128","hypothetical protein"]
["Contig23318@@KO",0.33985455514787705,0.04420010467459949,6.741923837424438,0.02517594203947293,5e-27,"AT3G06640","PAS domain-containing protein tyrosine kinase family protein \\\\ PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: PAS fold (InterPro:IPR013767), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT3G06620.1); Has 125232 Blast hits to 123605 proteins in 4849 species: Archae - 220; Bacteria - 14873; Metazoa - 46551; Fungi - 11020; Plants - 33122; Viruses - 498; Other Eukaryotes - 18948 (source: NCBI BLink).",2E-12,"AN5674.2","hypothetical protein",3E-11,"prkc","serine/threonine protein kinase",1e-24,"chlredraft_150994","hypothetical protein",9e-14,"CDC15","Protein kinase of the Mitotic Exit Network; localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p; required for spindle disassembly after meiosis II; relocalizes to the cytoplasm upon DNA replication stress",5e-28,"PHYPADRAFT_99879","hypothetical protein"]
["TRINITY_DN37418_c0_g1_i1@@W-35D-3@@KO",0,0,1.328390689138563,0,2E-12,"HT1","Protein kinase superfamily protein \\\\ high leaf temperature 1 (HT1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G58950.1); Has 132835 Blast hits to 130849 proteins in 5233 species: Archae - 136; Bacteria - 14325; Metazoa - 51137; Fungi - 12092; Plants - 33829; Viruses - 555; Other Eukaryotes - 20761 (source: NCBI BLink).","","","","","","",2e-13,"chlredraft_150994","hypothetical protein","","","","","",""]
["TRINITY_DN33166_c0_g1_i1@@W-35D-3@@KO",0.09989960987055753,0,3.4407998599358516,0.09990568353992571,3e-17,"AT2G46210","Fatty acid/sphingolipid desaturase \\\\ Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).","","","","","","",6e-26,"chlredraft_182572","hypothetical protein","","","",2e-88,"PHYPADRAFT_64577","hypothetical protein"]
["Contig5754@@KO",2.8114126820034215,1.7759702202672494,3.6386608577875195,3.3917516559151917,1e-31,"AT3G23620","Ribosomal RNA processing Brix domain protein \\\\ Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).",9e-18,"AN1484.2","hypothetical protein","","","",3e-30,"chlredraft_183898","hypothetical protein",2e-17,"RPF2","Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles",1e-28,"PHYPADRAFT_104698","hypothetical protein"]
["Contig14180@@KO",0.04227459100619935,0,2.377217623489777,0,1E-51,"AT3G23620","Ribosomal RNA processing Brix domain protein \\\\ Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).",4e-44,"AN1484.2","hypothetical protein","","","",1E-56,"chlredraft_183898","hypothetical protein",2e-47,"RPF2","Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles",3e-53,"PHYPADRAFT_104698","hypothetical protein"]
["Contig5169@@WT",2.1201935550509763,1.14778345212343,2.123684092544193,2.1203224580033164,2e-31,"AT3G23620","Ribosomal RNA processing Brix domain protein \\\\ Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).",2e-17,"AN1484.2","hypothetical protein","","","",6e-30,"chlredraft_183898","hypothetical protein",3e-17,"RPF2","Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles",2e-28,"PHYPADRAFT_104698","hypothetical protein"]
["Contig3551",43.80003726106163,39.83669650396245,36.43877511873861,45.67714007742745,1e-21,"AT1G21350","Thioredoxin superfamily protein \\\\ Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32; Bacteria - 684; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).","","","","","","",3e-31,"chlredraft_139747","hypothetical protein","","","",4e-24,"PHYPADRAFT_144006","hypothetical protein"]
["TRINITY_DN23170_c0_g1_i1@@W-35D-3@@KO",0.10030429579017207,0,3.1962204544220194,0,7E-94,"THY-2","thymidylate synthase 2 \\\\ Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function. \\\\ thymidylate synthase 2 (THY-2); CONTAINS InterPro DOMAIN/s: Thymidylate synthase, active site (InterPro:IPR020940), Dihydrofolate reductase domain (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: thymidylate synthase 1 (TAIR:AT2G16370.1); Has 13567 Blast hits to 13544 proteins in 2627 species: Archae - 73; Bacteria - 8801; Metazoa - 517; Fungi - 428; Plants - 92; Viruses - 256; Other Eukaryotes - 3400 (source: NCBI BLink).",6e-73,"AN7028.2","hypothetical protein",1e-31,"thya","thymidylate synthase",4E-90,"chlredraft_139742","hypothetical protein",2e-68,"CDC21","Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S",5e-99,"PHYPADRAFT_120817","hypothetical protein"]
["Contig15101",4.214834436070302,1.4281121704482902,2.2349800929034114,1.3803805763280976,6e-76,"THY-1","thymidylate synthase 1 \\\\ Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene.  This is unique in Arabidopsis and protozoa.  Other organisms have independent genes for  this function. \\\\ thymidylate synthase 1 (THY-1); CONTAINS InterPro DOMAIN/s: Thymidylate synthase, active site (InterPro:IPR020940), Dihydrofolate reductase domain (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: thymidylate synthase 2 (TAIR:AT4G34570.1); Has 13474 Blast hits to 13433 proteins in 2607 species: Archae - 76; Bacteria - 8708; Metazoa - 513; Fungi - 424; Plants - 92; Viruses - 253; Other Eukaryotes - 3408 (source: NCBI BLink).",6e-70,"AN7028.2","hypothetical protein",2e-18,"thya","thymidylate synthase",5e-76,"chlredraft_139742","hypothetical protein",3e-72,"CDC21","Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S",4e-71,"PHYPADRAFT_120817","hypothetical protein"]
["TRINITY_DN11863_c0_g1_i1@@W-35D-5@@WT",2.9272439205291696,1.4960116303874313,2.2604489652474746,1.5393016512431308,5e-76,"THY-1","thymidylate synthase 1 \\\\ Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene.  This is unique in Arabidopsis and protozoa.  Other organisms have independent genes for  this function. \\\\ thymidylate synthase 1 (THY-1); CONTAINS InterPro DOMAIN/s: Thymidylate synthase, active site (InterPro:IPR020940), Dihydrofolate reductase domain (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: thymidylate synthase 2 (TAIR:AT4G34570.1); Has 13474 Blast hits to 13433 proteins in 2607 species: Archae - 76; Bacteria - 8708; Metazoa - 513; Fungi - 424; Plants - 92; Viruses - 253; Other Eukaryotes - 3408 (source: NCBI BLink).",5e-70,"AN7028.2","hypothetical protein",2e-18,"thya","thymidylate synthase",4e-76,"chlredraft_139742","hypothetical protein",2e-72,"CDC21","Thymidylate synthase, required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S",3e-71,"PHYPADRAFT_120817","hypothetical protein"]
["Contig6945",9.67373319293115,6.767082736491934,10.219759053427401,13.815007190867712,6e-25,"ADT6","arogenate dehydratase 6 \\\\ Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Although this enzyme has sequence similarity to prephenate dehydratases, it is 98 times more active with arogenate than prephenate in enzymatic assays. \\\\ arogenate dehydratase 6 (ADT6); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: prephenate dehydratase 1 (TAIR:AT2G27820.1); Has 7065 Blast hits to 7063 proteins in 2215 species: Archae - 179; Bacteria - 3948; Metazoa - 2; Fungi - 121; Plants - 264; Viruses - 0; Other Eukaryotes - 2551 (source: NCBI BLink).","","","","","","",3e-26,"prd1","prephenate dehydratase","","","",2e-24,"PHYPADRAFT_116601","hypothetical protein"]
["Contig13727@@KO",0,0,1.230630335392435,0,2e-17,"HAG2","histone acetyltransferase of the GNAT family 2 \\\\ Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of  lysine 12 of histone H4 reduces radioactive acetylation by  HAG2. HAG2 acetylates histone H4 lysine 12. \\\\ histone acetyltransferase of the GNAT family 2 (HAG2); FUNCTIONS IN: histone acetyltransferase activity, H4 histone acetyltransferase activity; INVOLVED IN: histone acetylation, chromatin modification, chromatin silencing at telomere; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetyltransferase type B, catalytic subunit (InterPro:IPR017380), GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Histone acetyl transferase HAT1 N-terminal (InterPro:IPR019467); Has 368 Blast hits to 368 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 147; Plants - 50; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).","","","","","","",2e-17,"chlredraft_170595","histone acetyltransferase, type b catalytic subunit",3e-22,"HAT1","Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex that uses the cofactor acetyl coenzyme A, to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair",7e-21,"PHYPADRAFT_169354","hypothetical protein"]
["Contig4504",16.79388704444927,9.99573149198018,50.411603101679425,14.266775817034919,3e-20,"AT5G54830","DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein \\\\ DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein; FUNCTIONS IN: dopamine beta-monooxygenase activity, monooxygenase activity; INVOLVED IN: histidine catabolic process, metabolic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Electron transfer DM13 (InterPro:IPR019545), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane with DOMON related domain (TAIR:AT3G61750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",2e-13,"chlredraft_149117","hypothetical protein","","","",4e-24,"PHYPADRAFT_136386","hypothetical protein"]
["TRINITY_DN23690_c0_g1_i1@@W-35D-3@@KO",0.14183782579821383,0,2.492479607280096,0,1E-70,"TUBG1","gamma-tubulin \\\\ Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. \\\\ gamma-tubulin (TUBG1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, microtubule, plasma membrane, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin  complex protein 2 (TAIR:AT5G05620.1); Has 22646 Blast hits to 22602 proteins in 4766 species: Archae - 19; Bacteria - 43; Metazoa - 4166; Fungi - 13770; Plants - 1412; Viruses - 0; Other Eukaryotes - 3236 (source: NCBI BLink).",2e-64,"AN0676.2","TBG_EMENI Tubulin gamma chain (Gamma tubulin)","","","",2e-69,"tug","gamma tubulin",6e-44,"TUB4","Gamma-tubulin; involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body; protein abundance increases in response to DNA replication stress",6e-71,"PHYPADRAFT_170153","gamma tubulin"]
["TRINITY_DN49412_c0_g1_i1@@W-35D-3@@KO",0,0,0.6280020783703664,0,6e-41,"TUBG1","gamma-tubulin \\\\ Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. \\\\ gamma-tubulin (TUBG1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, microtubule, plasma membrane, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin  complex protein 2 (TAIR:AT5G05620.1); Has 22646 Blast hits to 22602 proteins in 4766 species: Archae - 19; Bacteria - 43; Metazoa - 4166; Fungi - 13770; Plants - 1412; Viruses - 0; Other Eukaryotes - 3236 (source: NCBI BLink).",2e-40,"AN0676.2","TBG_EMENI Tubulin gamma chain (Gamma tubulin)","","","",6e-38,"tug","gamma tubulin",3e-19,"TUB2","Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria",2E-41,"PHYPADRAFT_170153","gamma tubulin"]
["Contig11994",33.09068832571477,23.231850629631435,21.665346528167515,20.393821270670273,1e-170,"GCP2","gamma-tubulin  complex protein 2 \\\\ Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. \\\\ gamma-tubulin  complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",6e-156,"AN0676.2","TBG_EMENI Tubulin gamma chain (Gamma tubulin)","","","",3e-154,"tug","gamma tubulin",1e-71,"TUB4","Gamma-tubulin; involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body; protein abundance increases in response to DNA replication stress",2e-172,"PHYPADRAFT_170153","gamma tubulin"]
["Contig22135@@KO",0.033204180675367304,0.038865609282837485,6.3483551094727,0,4e-65,"WNK9","Protein kinase superfamily protein \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. \\\\ WNK9; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 1 (TAIR:AT3G04910.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-29,"AN8836.2","hypothetical protein",4E-14,"prkc","serine/threonine protein kinase",8e-62,"wnk2","WNK protein kinase",1e-33,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-59,"PHYPADRAFT_1987","hypothetical protein"]
["TRINITY_DN29864_c2_g1_i1@@W-35D-3@@KO",25.683240383623957,17.028439661159343,15.8343833337599,10.970385326135387,6e-75,"WNK3","with no lysine (K) kinase 3 \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. \\\\ with no lysine (K) kinase 3 (WNK3); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 2 (TAIR:AT3G22420.1); Has 106620 Blast hits to 105555 proteins in 3648 species: Archae - 79; Bacteria - 10632; Metazoa - 39040; Fungi - 10406; Plants - 28734; Viruses - 420; Other Eukaryotes - 17309 (source: NCBI BLink).",5e-20,"AN8019.2","hypothetical protein",2E-12,"prkc","serine/threonine protein kinase",5e-67,"wnk2","WNK protein kinase",5e-18,"MKK2","MAPKK involved in the protein kinase C signaling pathway; involved in control of cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk1p; MKK2 has a paralog, MKK1, that arose from the whole genome duplication",2e-74,"PHYPADRAFT_1987","hypothetical protein"]
["Contig3585",22.652849531786792,14.103692130494228,13.223578742804824,9.663765370945303,7e-75,"WNK3","with no lysine (K) kinase 3 \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. \\\\ with no lysine (K) kinase 3 (WNK3); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 2 (TAIR:AT3G22420.1); Has 106620 Blast hits to 105555 proteins in 3648 species: Archae - 79; Bacteria - 10632; Metazoa - 39040; Fungi - 10406; Plants - 28734; Viruses - 420; Other Eukaryotes - 17309 (source: NCBI BLink).",6e-20,"AN8019.2","hypothetical protein",3e-12,"prkc","serine/threonine protein kinase",6e-67,"wnk2","WNK protein kinase",7e-18,"MKK2","MAPKK involved in the protein kinase C signaling pathway; involved in control of cell integrity; upon activation by Bck1p phosphorylates downstream target, Slt2p; functionally redundant with Mkk1p; MKK2 has a paralog, MKK1, that arose from the whole genome duplication",2e-74,"PHYPADRAFT_1987","hypothetical protein"]
["Contig17075@@KO",0.19306094160009352,0,10.796039689846209,0,1e-69,"WNK8","with no lysine (K) kinase 8 \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Interacts specifically with and phosphorylates AtVHA-C, subunit C of the vacuolar H+-ATPase. \\\\ with no lysine (K) kinase 8 (WNK8); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 10 (TAIR:AT1G64630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-21,"AN2269.2","similar to MAPKK kinase","","","",6e-64,"wnk2","WNK protein kinase",4e-20,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-65,"PHYPADRAFT_1987","hypothetical protein"]
["TRINITY_DN27929_c0_g1_i1@@W-35D-3@@KO",0.2780203395687262,0,3.405947110648449,0.05295947477597651,4e-47,"WNK6","with no lysine (K) kinase 6 \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. \\\\ with no lysine (K) kinase 6 (WNK6); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G49160.2); Has 109997 Blast hits to 108787 proteins in 3825 species: Archae - 81; Bacteria - 10561; Metazoa - 41131; Fungi - 10681; Plants - 29357; Viruses - 431; Other Eukaryotes - 17755 (source: NCBI BLink).",8e-15,"AN2269.2","similar to MAPKK kinase","","","",4e-42,"wnk2","WNK protein kinase",7e-14,"CDC15","Protein kinase of the Mitotic Exit Network; localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p; required for spindle disassembly after meiosis II; relocalizes to the cytoplasm upon DNA replication stress",3e-47,"PHYPADRAFT_1987","hypothetical protein"]
["Contig13182@@KO",0.2716705691620961,0,2.5779583750031185,0,7E-39,"WNK9","Protein kinase superfamily protein \\\\ Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. \\\\ WNK9; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 1 (TAIR:AT3G04910.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-12,"AN1867.2","similar to cyclin-dependent protein kinase PHOA(M47)","","","",7e-37,"wnk2","WNK protein kinase",3e-14,"PHO85","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene NOP4/YPL043W",4e-39,"PHYPADRAFT_1987","hypothetical protein"]
["TRINITY_DN10144_c0_g1_i1@@W-35D-3@@KO",0.16992727757393855,0,1.6722094557391323,0,9e-36,"UBC37","ubiquitin-conjugating enzyme 37 \\\\ ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 11 (TAIR:AT3G08690.2); Has 10163 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4605; Fungi - 2137; Plants - 1818; Viruses - 27; Other Eukaryotes - 1574 (source: NCBI BLink).",5e-30,"AN5495.2","hypothetical protein","","","",1e-31,"chlredraft_77514","hypothetical protein",2e-34,"UBC13","Ubiquitin-conjugating enzyme involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus",4e-40,"PHYPADRAFT_198289","hypothetical protein"]
["TRINITY_DN1000_c0_g1_i1@@W-35D-3@@KO",0,0,0.797332481700596,0,2e-15,"BAC2","Mitochondrial substrate carrier family protein \\\\ encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol \\\\ BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink).",2e-11,"AN5356.2","similar to carnitine/acyl carnitine carrier","","","",1E-13,"ccp2","low-CO2-inducible chloroplast envelope protein","","","",5e-13,"PHYPADRAFT_80318","hypothetical protein"]
["Contig23868@@KO",0.3892046926468951,0.1012367666948162,8.024888833786598,0.23065384024187774,2E-41,"BOU","Mitochondrial substrate carrier family protein \\\\ Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein \\\\ A BOUT DE SOUFFLE (BOU); FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, ornithine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G33820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-34,"AN7671.2","hypothetical protein","","","",5e-27,"ccp2","low-CO2-inducible chloroplast envelope protein",2e-28,"CRC1","Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation",2e-40,"PHYPADRAFT_196448","hypothetical protein"]
["TRINITY_DN10466_c0_g1_i1@@W-35D-3@@KO",0.13091074254185597,0,2.3924792169940545,0,6e-40,"BOU","Mitochondrial substrate carrier family protein \\\\ Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein \\\\ A BOUT DE SOUFFLE (BOU); FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, ornithine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G33820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2E-51,"AN5356.2","similar to carnitine/acyl carnitine carrier","","","",2e-32,"ccp1","low-CO2-inducible chloroplast envelope protein",4e-44,"CRC1","Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation",3e-35,"PHYPADRAFT_155608","hypothetical protein"]
["Contig14734@@KO",1.1286332668631824,0.047181041966607364,11.84324291609529,0.1612431264574615,3e-47,"BOU","Mitochondrial substrate carrier family protein \\\\ Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein \\\\ A BOUT DE SOUFFLE (BOU); FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, ornithine transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G33820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3E-49,"AN8881.2","similar to mitochondrial carrier AMCA","","","",2E-35,"ccp1","low-CO2-inducible chloroplast envelope protein",3E-43,"ORT1","Ornithine transporter of the mitochondrial inner membrane, exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome",7e-46,"PHYPADRAFT_16879","hypothetical protein"]
["Contig17174@@KO",0.3417307238277155,0,1.249070379850208,0,5e-13,"HAG1","histone acetyltransferase of the GNAT family 1 \\\\ Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis.  It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG.  In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been  previously acetylated on K9 both serve as excellent substrates  for HAG1-catalyzed acetylation. However, prior acetylation  of H3 lysine 14 blocks radioactive acetylation of the  peptide by HAG1.  HAG1 is specific for  histone H3 lysine 14. \\\\ histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink).","","","","","","",8e-12,"chlredraft_171050","bromodomain protein",3e-12,"GCN5","Acetyltransferase, modifies N-terminal lysines on histones H2B and H3; acetylates Rsc4p, a subunit of the RSC chromatin-remodeling complex, altering replication stress tolerance; catalytic subunit of the ADA and SAGA histone acetyltransferase complexes; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; greater involvement in repression of RNAPII-dependent transcription than in activation",5e-12,"PHYPADRAFT_66961","hypothetical protein"]
["Contig13043@@KO",0.42315874786478835,0.39624703214142903,0.5948847812688041,0.3385475799643967,1e-15,"SYN4","sister chromatid cohesion 1 protein 4 \\\\ Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin. \\\\ sister chromatid cohesion 1 protein 4 (SYN4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion; LOCATED IN: nuclear chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: Rad21/Rec8-like family protein (TAIR:AT3G59550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",6e-15,"AN7465.2","hypothetical protein","","","",6e-12,"chlredraft_175413","cohesin subunit SCC1b","","","",3e-15,"PHYPADRAFT_129589","hypothetical protein"]
["TRINITY_DN30834_c0_g1_i1@@W-35D-3@@KO",0.117112042652309,0,2.0579797838488356,0,1e-39,"AT5G14600","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \\\\ S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-21,"AN8799.2","hypothetical protein","","","",1e-47,"chlredraft_98460","hypothetical protein",2e-34,"GCD14","Subunit of tRNA (1-methyladenosine) methyltransferase, with Gcd10p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression",2e-40,"PHYPADRAFT_104852","hypothetical protein"]
["Contig17446",1.3452576141270134,0.5801263738541182,1.293971602655281,4.437259784457104,5e-18,"AT5G14600","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \\\\ S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1e-21,"chlredraft_98460","hypothetical protein","","","",9e-19,"PHYPADRAFT_104852","hypothetical protein"]
["Contig12619",28.765748423065038,16.69253320210982,23.860987547308387,24.054178546068567,6e-73,"LWD2","Transducin/WD40 repeat-like superfamily protein \\\\ LIGHT-REGULATED WD 2 (LWD2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G12910.1); Has 5639 Blast hits to 5196 proteins in 384 species: Archae - 6; Bacteria - 320; Metazoa - 2319; Fungi - 1389; Plants - 885; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink).",2e-38,"AN1695.2","hypothetical protein","","","",5e-73,"chlredraft_130509","hypothetical protein",2e-36,"Z73603","Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; similar to the petunia WD repeat protein an11; overexpression causes a cell cycle delay or arrest",1E-78,"PHYPADRAFT_59551","hypothetical protein"]
["Contig2656",4.729490177519073,2.7679423736366693,4.1203887324899675,2.842307737707751,4e-48,"ATAN11","Transducin/WD40 repeat-like superfamily protein \\\\ Encodes a protein with similarity to the petunia WD repeat protein an11. \\\\ ANTHOCYANIN11 (ATAN11); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1); Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6; Bacteria - 291; Metazoa - 1848; Fungi - 1200; Plants - 767; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).",9e-37,"AN1695.2","hypothetical protein","","","",7e-52,"chlredraft_130509","hypothetical protein",6e-36,"Z73603","Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; similar to the petunia WD repeat protein an11; overexpression causes a cell cycle delay or arrest",5E-52,"PHYPADRAFT_132054","hypothetical protein"]
["Contig19825@@KO",0.11658687654176053,0,1.2565673873042937,0,3E-103,"ATAN11","Transducin/WD40 repeat-like superfamily protein \\\\ Encodes a protein with similarity to the petunia WD repeat protein an11. \\\\ ANTHOCYANIN11 (ATAN11); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G26640.1); Has 4731 Blast hits to 4446 proteins in 351 species: Archae - 6; Bacteria - 291; Metazoa - 1848; Fungi - 1200; Plants - 767; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink).",4e-57,"AN1695.2","hypothetical protein","","","",1E-89,"chlredraft_130509","hypothetical protein",6e-44,"Z73603","Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; similar to the petunia WD repeat protein an11; overexpression causes a cell cycle delay or arrest",2E-107,"PHYPADRAFT_132054","hypothetical protein"]
["TRINITY_DN54957_c0_g1_i1@@W-35D-3@@KO",0,0,0.5972176627639758,0,1e-43,"HOT5","GroES-like zinc-binding dehydrogenase family protein \\\\ Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. \\\\ sensitive to hot temperatures 5 (HOT5); FUNCTIONS IN: S-(hydroxymethyl)glutathione dehydrogenase activity, S-nitrosoglutathione reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8e-50,"AN7632.2","similar to AF364077_2 formaldehyde dehydrogenase",7e-11,"yjmd","zinc-type alcohol dehydrogenase",2E-45,"fdh1","formaldehyde dehydrogenase",2e-48,"SFA1","Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress",3e-47,"PHYPADRAFT_137950","hypothetical protein"]
["Contig23285@@KO",1.7347038177689806,0.3384128114368835,38.30760300905076,0.5300806145008291,3e-129,"HOT5","GroES-like zinc-binding dehydrogenase family protein \\\\ Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. \\\\ sensitive to hot temperatures 5 (HOT5); FUNCTIONS IN: S-(hydroxymethyl)glutathione dehydrogenase activity, S-nitrosoglutathione reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",9e-135,"AN7632.2","similar to AF364077_2 formaldehyde dehydrogenase",9e-26,"yjmd","zinc-type alcohol dehydrogenase",9e-124,"fdh1","formaldehyde dehydrogenase",2e-127,"SFA1","Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress",6E-134,"PHYPADRAFT_137950","hypothetical protein"]
["TRINITY_DN53936_c0_g1_i1@@W-35D-3@@KO",0.41268053125099363,0,0.7735390679609592,0,3e-54,"HOT5","GroES-like zinc-binding dehydrogenase family protein \\\\ Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. \\\\ sensitive to hot temperatures 5 (HOT5); FUNCTIONS IN: S-(hydroxymethyl)glutathione dehydrogenase activity, S-nitrosoglutathione reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-55,"AN7632.2","similar to AF364077_2 formaldehyde dehydrogenase","","","",2e-49,"fdh1","formaldehyde dehydrogenase",4e-54,"SFA1","Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress",2E-55,"PHYPADRAFT_137950","hypothetical protein"]
["Contig13983",53.07821960126416,47.162659742464534,36.45478662099648,42.65125002567216,4e-106,"HOT5","GroES-like zinc-binding dehydrogenase family protein \\\\ Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. \\\\ sensitive to hot temperatures 5 (HOT5); FUNCTIONS IN: S-(hydroxymethyl)glutathione dehydrogenase activity, S-nitrosoglutathione reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-111,"AN7632.2","similar to AF364077_2 formaldehyde dehydrogenase","","","",2e-106,"fdh1","formaldehyde dehydrogenase",6e-107,"SFA1","Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress",3e-115,"PHYPADRAFT_137950","hypothetical protein"]
["Contig12939",12.894602567193344,6.99439922541258,8.695296518984533,6.197240861627838,1e-17,"AT1G80950","Phospholipid/glycerol acyltransferase family protein \\\\ Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: calcineurin B subunit-related (TAIR:AT2G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",4e-16,"chlredraft_98450","hypothetical protein","","","",4E-14,"PHYPADRAFT_64386","hypothetical protein"]
["Contig15429@@WT",8.976127012541328,3.786638305048693,4.996281519400833,3.2808144026833648,5e-17,"AT1G80950","Phospholipid/glycerol acyltransferase family protein \\\\ Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: calcineurin B subunit-related (TAIR:AT2G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-16,"chlredraft_98450","hypothetical protein","","","",6e-14,"PHYPADRAFT_43926","hypothetical protein"]
["Contig590",1.1978647631864778,0.396247032141429,0.9152073557981601,0.7986250604288332,9e-15,"AT4G29530","Pyridoxal phosphate phosphatase-related protein \\\\ Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate phosphatase-related protein (TAIR:AT1G17710.1); Has 373 Blast hits to 361 proteins in 111 species: Archae - 0; Bacteria - 31; Metazoa - 175; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","","","","","","",9e-16,"chlredraft_117519","hypothetical protein","","","",3e-17,"PHYPADRAFT_176531","hypothetical protein"]
["Contig18794@@KO",0.1547551992191226,0,5.819672831612529,0,1e-34,"AT5G21160","LA RNA-binding protein \\\\ LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-33,"chlredraft_99784","hypothetical protein","","","",8e-34,"PHYPADRAFT_207847","hypothetical protein"]
["Contig19703@@KO",0.29815221867904357,0,7.754241258960705,0,5e-35,"AT5G21160","LA RNA-binding protein \\\\ LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3E-28,"chlredraft_99784","hypothetical protein","","","",2e-37,"PHYPADRAFT_207847","hypothetical protein"]
["TRINITY_DN30250_c0_g1_i1@@W-35D-3@@KO",0.18942712909881673,0,6.258057869487432,0.06314621527933374,5e-18,"AT5G21160","LA RNA-binding protein \\\\ LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",2e-18,"chlredraft_99784","hypothetical protein","","","",5e-21,"PHYPADRAFT_207847","hypothetical protein"]
["Contig13240@@KO",0,0,2.002302454677704,0,5e-41,"AT5G21160","LA RNA-binding protein \\\\ LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1e-38,"chlredraft_99784","hypothetical protein","","","",7e-46,"PHYPADRAFT_207847","hypothetical protein"]
["Contig14309",19.604047607257133,15.142502054099172,13.288342252618147,18.021708460000504,5e-16,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-43,"AN1130.2","hypothetical protein",6e-14,"bsaa","glutathione peroxidase BsaA",7e-37,"ank9","hypothetical protein",4e-12,"HYR1","Thiol peroxidase that functions as a hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce a redox signal to the Yap1p transcription factor",4e-13,"PHYPADRAFT_149403","hypothetical protein"]
["TRINITY_DN38409_c0_g2_i1@@W-35D-3@@KO",0,0,3.320815078810251,0,"","","",1e-11,"AN3320.2","hypothetical protein","","","",2E-12,"ank9","hypothetical protein","","","",4e-11,"PHYPADRAFT_38273","hypothetical protein"]
["Contig17571",4.799584025703833,4.035414392853742,9.693373733847746,1.6224932381445036,6e-12,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",5e-12,"AN0214.2","hypothetical protein","","","",9e-16,"ank9","hypothetical protein","","","","","",""]
["Contig11162@@KO",0.08957406879866528,0.052423379962897074,3.053680390380763,0,5E-15,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",2e-18,"AN0214.2","hypothetical protein","","","",2e-15,"ank9","hypothetical protein",4e-11,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication","","",""]
["Contig23685@@KO",0,0,2.9819119665278238,0,2e-17,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",7e-20,"AN0214.2","hypothetical protein","","","",4e-26,"ank9","hypothetical protein","","","",1e-15,"PHYPADRAFT_151349","hypothetical protein"]
["Contig15670",3.8364289834377083,3.1197529613520896,3.1224520858396128,5.680952494363732,2e-17,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-21,"AN0214.2","hypothetical protein","","","",1e-43,"ank9","hypothetical protein",9E-13,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",1e-12,"PHYPADRAFT_109446","hypothetical protein"]
["Contig21971@@KO",0.08253610625019872,0.06440586681155926,4.293141827183324,0,7e-17,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-18,"AN0214.2","hypothetical protein","","","",2E-16,"ank9","hypothetical protein",8e-11,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",6e-15,"PHYPADRAFT_170846","hypothetical protein"]
["Contig12457@@KO",0.16522957399944455,0,3.193890455773026,0,5e-16,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",5e-17,"AN5824.2","hypothetical protein","","","",8E-14,"ank9","hypothetical protein",2E-14,"AKR2","Ankyrin repeat-containing protein; member of a family of putative palmitoyltransferases containing an Asp-His-His-Cys-cysteine rich (DHHC-CRD) domain; possibly involved in constitutive endocytosis of Ste3p; AKR2 has a paralog, AKR1, that arose from the whole genome duplication",2E-12,"PHYPADRAFT_129551","hypothetical protein"]
["TRINITY_DN12447_c0_g1_i1@@W-35D-3@@KO",0.19726004149326706,0,1.5714346391999001,0,1E-10,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",9e-12,"AN5168.2","hypothetical protein","","","",8e-15,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN2830_c0_g1_i1@@W-35D-3@@KO",0.18623834863046274,0,3.0545373296094467,0,2E-12,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",5e-11,"AN1130.2","hypothetical protein","","","",6e-14,"ank9","hypothetical protein","","","","","",""]
["Contig16774",3.4069770576179357,1.6648424922949812,3.844075826279271,1.5143040862597477,4e-17,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",9e-45,"AN1130.2","hypothetical protein","","","",7e-54,"ank9","hypothetical protein","","","",2e-11,"PHYPADRAFT_231314","hypothetical protein"]
["Contig16692",1.525755485258955,1.2203664464074058,5.004852244289657,0.4408006048988702,1E-14,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",3e-17,"AN1130.2","hypothetical protein","","","",8e-28,"ank9","hypothetical protein","","","",1e-11,"PHYPADRAFT_170846","hypothetical protein"]
["Contig17307",21.006162373710055,21.090284839881818,8.836782935334679,7.915267404628847,6E-11,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-28,"AN1130.2","hypothetical protein","","","",3e-35,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN17282_c0_g1_i1@@W-35D-3@@KO",0.02081241872303282,0,1.3166325994652492,0,9e-20,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",2e-38,"AN1130.2","hypothetical protein","","","",1e-33,"ank9","hypothetical protein","","","","","",""]
["Contig11909@@KO",0,0,1.588754743221119,0.039655996554969375,6e-23,"AT4G03500","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03460.1); Has 38634 Blast hits to 17459 proteins in 653 species: Archae - 49; Bacteria - 2374; Metazoa - 20314; Fungi - 3164; Plants - 3215; Viruses - 213; Other Eukaryotes - 9305 (source: NCBI BLink).",1E-50,"AN1130.2","hypothetical protein","","","",5e-44,"ank9","hypothetical protein",4e-12,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",4E-14,"PHYPADRAFT_227646","hypothetical protein"]
["Contig19676@@KO",0.05727885760919277,0,1.610474596217463,0,2e-17,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-41,"AN1130.2","hypothetical protein","","","",1e-36,"ank9","hypothetical protein","","","",8e-16,"PHYPADRAFT_170846","hypothetical protein"]
["Contig16646@@KO",0.8437969625235092,0.05809807573207665,45.21614964266637,0.19855253257934835,4E-14,"EMB506","Ankyrin repeat family protein \\\\ Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality. \\\\ embryo defective 506 (EMB506); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 90387 Blast hits to 29284 proteins in 1374 species: Archae - 134; Bacteria - 8440; Metazoa - 46466; Fungi - 7182; Plants - 3258; Viruses - 1346; Other Eukaryotes - 23561 (source: NCBI BLink).",3e-14,"AN1130.2","hypothetical protein","","","",1E-14,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN19066_c0_g1_i1@@W-35D-3@@KO",0,0,1.279752134494234,0,3e-13,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",3e-19,"AN1130.2","hypothetical protein","","","",1E-13,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN18044_c0_g1_i1@@W-35D-3@@KO",0,0,0.8920782661369848,0,"","","",2e-20,"AN1130.2","hypothetical protein","","","",1e-16,"ank9","hypothetical protein","","","","","",""]
["Contig23927@@KO",0.42766329287202015,0.21453487535045293,0.880353988607313,0.22402772533891224,4e-18,"AT2G31820","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G05640.1); Has 69909 Blast hits to 28585 proteins in 1153 species: Archae - 97; Bacteria - 6878; Metazoa - 33005; Fungi - 7349; Plants - 5597; Viruses - 621; Other Eukaryotes - 16362 (source: NCBI BLink).",3e-42,"AN1130.2","hypothetical protein","","","",2e-39,"ank9","hypothetical protein","","","",3E-11,"PHYPADRAFT_170846","hypothetical protein"]
["Contig23928@@KO",0.11306315924684757,0.13234082221553273,0.6755221312672761,0.11307003323011815,9e-19,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2E-46,"AN1130.2","hypothetical protein","","","",2e-53,"ank9","hypothetical protein",6E-11,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",6e-14,"PHYPADRAFT_182911","hypothetical protein"]
["Contig6917",2.017091873446253,0.3372875818061707,28.559216711127185,0.048028916858346114,6e-21,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",2e-31,"AN1130.2","hypothetical protein","","","",8e-27,"ank9","hypothetical protein",6e-16,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",2e-13,"PHYPADRAFT_227646","hypothetical protein"]
["Contig21422@@KO",0.1135074152753224,0,2.4334566455255127,0,4e-23,"AT1G07710","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1); Has 71061 Blast hits to 30444 proteins in 1217 species: Archae - 72; Bacteria - 7320; Metazoa - 31750; Fungi - 7301; Plants - 5738; Viruses - 586; Other Eukaryotes - 18294 (source: NCBI BLink).",1e-48,"AN1130.2","hypothetical protein","","","",2e-40,"ank9","hypothetical protein",4e-13,"NAS6","Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6",4e-20,"PHYPADRAFT_78842","hypothetical protein"]
["Contig6491",0.9059929471227653,0.2742589407756106,0.8564282128605248,0.3749164259735497,6e-12,"XBAT32","XB3 ortholog 2 in Arabidopsis thaliana \\\\ ubiquitin ligase \\\\ XB3 ortholog 2 in Arabidopsis thaliana (XBAT32); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",1e-24,"AN1130.2","hypothetical protein","","","",6E-37,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN30597_c0_g1_i1@@W-35D-3@@KO",0.05512907860223197,0,2.1700428051576526,0,"","","",2E-12,"AN1130.2","hypothetical protein","","","",1E-14,"ank9","hypothetical protein","","","","","",""]
["Contig19042@@KO",0.11648240801439336,0,0.8187661505635153,0,2e-13,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",3e-14,"AN1130.2","hypothetical protein","","","",2E-12,"ank9","hypothetical protein","","","",1E-10,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN30013_c0_g1_i4@@W-25D-2@@KO",2.1470037445212986,2.3298302916929856,1.0060998458124475,2.16204493217693,7e-16,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",5e-34,"AN1130.2","hypothetical protein","","","",3e-27,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN30799_c2_g2_i2@@W-25D-2@@KO",2.1626167827577936,0.4939220461507283,1.4088957156866528,0.87916596136017,2E-19,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-37,"AN1130.2","hypothetical protein","","","",1e-40,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN38956_c0_g1_i1@@W-35D-3@@KO",0,0,1.2882580399198753,0,7e-18,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1E-26,"AN1130.2","hypothetical protein","","","",9e-36,"ank9","hypothetical protein",1e-12,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",1e-15,"PHYPADRAFT_147186","hypothetical protein"]
["TRINITY_DN8257_c0_g1_i1@@W-35D-3@@KO",0,0,0.9217031879245955,0,5e-12,"AT2G31820","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G05640.1); Has 69909 Blast hits to 28585 proteins in 1153 species: Archae - 97; Bacteria - 6878; Metazoa - 33005; Fungi - 7349; Plants - 5597; Viruses - 621; Other Eukaryotes - 16362 (source: NCBI BLink).",8e-18,"AN1130.2","hypothetical protein","","","",2E-16,"ank9","hypothetical protein",1E-10,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication","","",""]
["Contig23556@@KO",0.213350348504945,0,2.6993885495683396,0,1e-12,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",8e-33,"AN1130.2","hypothetical protein","","","",8E-41,"ank9","hypothetical protein","","","",3E-11,"PHYPADRAFT_129551","hypothetical protein"]
["TRINITY_DN56458_c0_g1_i1@@W-35D-3@@KO",0.2311010975005564,0,0.48732961281540427,0,2e-11,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",1E-14,"AN1130.2","hypothetical protein","","","",1e-12,"ank9","hypothetical protein","","","","","",""]
["Contig7767",0.15393057115934042,0.030029378397929494,6.564090403523059,0,1E-14,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-23,"AN1130.2","hypothetical protein","","","",4e-40,"ank9","hypothetical protein","","","",1e-12,"PHYPADRAFT_52495","hypothetical protein"]
["Contig23555@@KO",0.07483843830976568,0,2.6828378943853215,0,2E-16,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1E-26,"AN1130.2","hypothetical protein","","","",1e-36,"ank9","hypothetical protein","","","",2e-11,"PHYPADRAFT_15522","hypothetical protein"]
["TRINITY_DN37441_c0_g1_i5@@W-35D-3@@KO",0,0.03399438345449257,0.16331421340998803,0,2e-13,"AT1G05640","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G31820.1); Has 67578 Blast hits to 27690 proteins in 1106 species: Archae - 88; Bacteria - 6425; Metazoa - 32117; Fungi - 6903; Plants - 5434; Viruses - 485; Other Eukaryotes - 16126 (source: NCBI BLink).",6e-33,"AN1130.2","hypothetical protein","","","",5E-36,"ank9","hypothetical protein","","","",8e-11,"PHYPADRAFT_117942","hypothetical protein"]
["Contig19688@@KO",0.35257490464893676,0,3.6182935044268216,0.04701284538697345,5e-14,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",5e-17,"AN1130.2","hypothetical protein","","","",3e-18,"ank9","hypothetical protein",1e-11,"NAS6","Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6","","",""]
["Contig22075@@KO",0.19748479657282642,0.07705221437767248,3.470349502578363,0,3e-15,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-37,"AN1130.2","hypothetical protein","","","",1e-44,"ank9","hypothetical protein","","","",7e-14,"PHYPADRAFT_151349","hypothetical protein"]
["Contig16024@@KO",0.5179058459922827,0,6.8763308581190845,0,5e-24,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-21,"AN1130.2","hypothetical protein","","","",5e-21,"ank9","hypothetical protein",1e-12,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",9e-17,"PHYPADRAFT_170846","hypothetical protein"]
["Contig5749@@WT",22.18693430992617,22.681906589391172,9.656506002229776,8.793378317380302,6E-11,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-28,"AN1130.2","hypothetical protein","","","",3e-35,"ank9","hypothetical protein","","","","","",""]
["Contig22076@@KO",0.12725831360162798,0.03723907497364384,3.4885930432820795,0.16968806749072063,1e-17,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-39,"AN1130.2","hypothetical protein","","","",9e-48,"ank9","hypothetical protein",2e-13,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",5e-14,"PHYPADRAFT_151349","hypothetical protein"]
["TRINITY_DN33964_c0_g1_i1@@W-35D-3@@KO",0.09288629320761914,0,2.676917755282901,0,1e-12,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",2e-24,"AN1130.2","hypothetical protein","","","",2E-14,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN53788_c0_g1_i1@@W-35D-3@@KO",0,0,1.4130046763333244,0,"","","",2e-13,"AN1130.2","hypothetical protein","","","",6e-13,"ank9","hypothetical protein","","","",3E-11,"PHYPADRAFT_130242","hypothetical protein"]
["TRINITY_DN51584_c0_g1_i1@@W-35D-3@@KO",0,0,1.2566860265326658,0.12546967856805727,3e-20,"SPIK","Shaker pollen inward K+ channel \\\\ Encodes SPIK, a member of the Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). Mutant plants have impaired pollen-tube growth. \\\\ Shaker pollen inward K+ channel (SPIK); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding, potassium channel activity; INVOLVED IN: pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: K+ transporter 5 (TAIR:AT4G32500.1); Has 83148 Blast hits to 34215 proteins in 1581 species: Archae - 129; Bacteria - 8355; Metazoa - 40552; Fungi - 7952; Plants - 3977; Viruses - 1178; Other Eukaryotes - 21005 (source: NCBI BLink).",1E-25,"AN1130.2","hypothetical protein","","","",8e-25,"ank9","hypothetical protein",4e-11,"PHO81","Cyclin-dependent kinase (CDK) inhibitor; regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; inhibitory activity for Pho80p-Pho85p requires myo-D-inositol heptakisphosphate (IP7) generated by Vip1p; relative distribution to the nucleus increases upon DNA replication stress",5E-15,"PHYPADRAFT_164636","hypothetical protein"]
["TRINITY_DN9401_c0_g1_i1@@W-35D-3@@KO",0,0,1.1961105503884397,0,3e-12,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",3e-19,"AN1130.2","hypothetical protein","","","",1e-16,"ank9","hypothetical protein","","","","","",""]
["Contig10815@@KO",0,0,1.8827122747847864,0,6e-20,"AT2G31820","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G05640.1); Has 69909 Blast hits to 28585 proteins in 1153 species: Archae - 97; Bacteria - 6878; Metazoa - 33005; Fungi - 7349; Plants - 5597; Viruses - 621; Other Eukaryotes - 16362 (source: NCBI BLink).",1E-25,"AN1130.2","hypothetical protein","","","",4e-25,"ank9","hypothetical protein",2E-14,"NAS6","Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6",2E-14,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN31813_c0_g1_i1@@W-25D-2@@KO",2.7427663374851363,2.837113195783971,2.720007039143878,3.9124006885777582,3e-15,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-28,"AN1130.2","hypothetical protein","","","",5e-30,"ank9","hypothetical protein",2E-12,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",9E-13,"PHYPADRAFT_109446","hypothetical protein"]
["TRINITY_DN11871_c0_g1_i1@@W-35D-3@@KO",0,0,1.0718393243740563,0,"","","",9e-15,"AN1130.2","hypothetical protein","","","",1e-12,"ank9","hypothetical protein",1e-12,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate","","",""]
["Contig16505@@KO",0,0,1.1075673018531915,0,2E-14,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",6e-20,"AN8019.2","hypothetical protein","","","",4e-19,"ank9","hypothetical protein",4e-12,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",1e-12,"PHYPADRAFT_117942","hypothetical protein"]
["Contig12162",19.145273059681816,18.217740558022864,8.184197865045226,8.35110552128392,5e-17,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",3e-33,"AN8019.2","hypothetical protein","","","",2e-30,"ank9","hypothetical protein",1E-13,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",5e-12,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN37441_c0_g1_i15@@W-35D-3@@KO",0.03084089379455824,0,0.21678363559404104,0,3e-20,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3E-52,"AN8019.2","hypothetical protein","","","",8e-50,"ank9","hypothetical protein",1E-13,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",1e-15,"PHYPADRAFT_209624","hypothetical protein"]
["Contig6482@@KO",1.654328808579765,1.0031939580986318,3.866805805458015,0.34550332601088996,5e-18,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-44,"AN8019.2","hypothetical protein","","","",4E-41,"ank9","hypothetical protein","","","",3e-12,"PHYPADRAFT_170846","hypothetical protein"]
["Contig20339@@KO",0.35752026222239547,0.2510872282876382,17.993399483077013,0.09534453297127124,7e-15,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",4e-17,"AN8019.2","hypothetical protein","","","",1e-17,"ank9","hypothetical protein",1E-14,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",2E-14,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN32585_c0_g1_i1@@W-35D-3@@KO",0.32744173134524684,0.12775722950655646,4.603239415762635,0.7276925312416923,1e-11,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",7e-18,"AN8019.2","hypothetical protein","","","",2E-19,"ank9","hypothetical protein","","","",2e-13,"PHYPADRAFT_151349","hypothetical protein"]
["Contig1068",3.2977294498084717,1.8469910761682324,5.558229524234613,1.276618042942668,1e-15,"KEG","protein kinases;ubiquitin-protein ligases \\\\ Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling.  KEG is essential for Arabidopsis growth and development.  ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. \\\\ KEEP ON GOING (KEG); FUNCTIONS IN: ubiquitin-protein ligase activity, protein kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, response to abscisic acid stimulus, defense response, protein ubiquitination, developmental growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G32250.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",7e-29,"AN8019.2","hypothetical protein","","","",1e-29,"ank9","hypothetical protein","","","",2e-13,"PHYPADRAFT_109446","hypothetical protein"]
["Contig5845",111.49600267475775,111.50422320804726,66.36784610326518,62.612420910873226,1E-13,"CAO","chloroplast signal recognition particle component (CAO) \\\\ A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting.  It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1. \\\\ CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).",2E-14,"AN8019.2","hypothetical protein","","","",1e-17,"ank9","hypothetical protein","","","",5e-14,"PHYPADRAFT_15522","hypothetical protein"]
["Contig1790",21.77721534122953,21.4884153828189,10.971185537225011,9.315962223285585,7e-22,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-36,"AN8019.2","hypothetical protein","","","",2e-31,"ank9","hypothetical protein",9e-12,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",8e-16,"PHYPADRAFT_170846","hypothetical protein"]
["Contig6055",373.33030329413117,331.13333053022006,66.94909448625296,288.67872031516265,1e-11,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-18,"AN8019.2","hypothetical protein","","","",6e-23,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN7149_c0_g1_i1@@W-35D-3@@KO",0,0,2.460507531044728,0,1e-12,"KT1","K+ transporter 1 \\\\ Encodes AKT1, a member of the Shaker family inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). \\\\ K+ transporter 1 (KT1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ion transport (InterPro:IPR005821), Ankyrin repeat-containing domain (InterPro:IPR020683), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: K+ transporter 5 (TAIR:AT4G32500.1); Has 86170 Blast hits to 36402 proteins in 1811 species: Archae - 161; Bacteria - 9078; Metazoa - 42367; Fungi - 8163; Plants - 4219; Viruses - 1188; Other Eukaryotes - 20994 (source: NCBI BLink).",4e-20,"AN8019.2","hypothetical protein","","","",9e-15,"ank9","hypothetical protein","","","","","",""]
["Contig22088@@KO",0.39608277679482934,0.09272325432194317,4.231838502510366,0,6E-11,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",6e-23,"AN8019.2","hypothetical protein","","","",6e-21,"ank9","hypothetical protein","","","",2E-12,"PHYPADRAFT_52495","hypothetical protein"]
["Contig22087@@KO",0.3834642104544631,0.39274042123752256,2.6280219717644866,0.06391458736790971,"","","",1e-12,"AN8019.2","hypothetical protein","","","",3e-18,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN31943_c1_g2_i6@@W-25D-2@@KO",18.05477324223097,21.13317504754288,8.395502143855122,8.333478891431303,4e-13,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",1e-17,"AN8019.2","hypothetical protein","","","",2E-16,"ank9","hypothetical protein","","","",5e-13,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN37441_c0_g1_i9@@W-35D-3@@KO",0.035752026222239545,0,0.5528698165191261,0,1e-20,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4E-52,"AN8019.2","hypothetical protein","","","",2E-46,"ank9","hypothetical protein",1E-14,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",2e-15,"PHYPADRAFT_209624","hypothetical protein"]
["Contig2641",1.498810197161581,1.0412070495864771,3.4774996977477177,0.2762202977137335,9e-16,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",3e-40,"AN8019.2","hypothetical protein","","","",3e-44,"ank9","hypothetical protein","","","","","",""]
["Contig14221@@KO",0,0,0.8162975089035248,0,7e-11,"AKR2","ankyrin repeat-containing protein 2 \\\\ Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. \\\\ ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",7e-15,"AN8019.2","hypothetical protein","","","",2e-15,"ank9","hypothetical protein",2E-12,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",4E-14,"PHYPADRAFT_117942","hypothetical protein"]
["Contig134",6.871471477083203,4.9730092758199955,4.814787320212224,3.6707883674512143,3e-12,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",6e-25,"AN8019.2","hypothetical protein","","","",2e-30,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN9287_c0_g1_i1@@W-35D-3@@KO",0.10007264614631485,0,0.8441044101883446,0,"","","",3E-11,"AN8019.2","hypothetical protein","","","",1e-12,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN4691_c0_g1_i1@@W-35D-3@@KO",0,0,1.2608786877500757,0,5e-13,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-18,"AN8019.2","hypothetical protein","","","",2e-18,"ank9","hypothetical protein","","","","","",""]
["Contig3883",0.3385269982918307,0.45285375101877606,2.4475259572202224,0.38691151995931056,"","","",9e-14,"AN8019.2","hypothetical protein","","","",8e-23,"ank9","hypothetical protein","","","","","",""]
["Contig14759@@KO",19.686890917055596,22.09332398412914,8.70231451456079,8.38942574425434,3e-17,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",2e-24,"AN8019.2","hypothetical protein","","","",2e-22,"ank9","hypothetical protein","","","",5e-14,"PHYPADRAFT_170846","hypothetical protein"]
["Contig10344",7.49566398143163,2.807584266243964,6.835662815137854,3.49384361705736,"","","",1e-24,"AN8019.2","hypothetical protein","","","",3e-22,"ank9","hypothetical protein","","","","","",""]
["Contig8728",27.80552699976157,26.598888724334103,11.508598348246519,11.950986883607454,4e-19,"AT1G07710","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1); Has 71061 Blast hits to 30444 proteins in 1217 species: Archae - 72; Bacteria - 7320; Metazoa - 31750; Fungi - 7301; Plants - 5738; Viruses - 586; Other Eukaryotes - 18294 (source: NCBI BLink).",3E-28,"AN8019.2","hypothetical protein","","","",2e-27,"ank9","hypothetical protein","","","",3E-11,"PHYPADRAFT_129551","hypothetical protein"]
["Contig8282",1.1218499878667787,0.0820705827089044,0.5914194330284033,0.37397273126595715,1E-13,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-17,"AN8019.2","hypothetical protein","","","",1e-24,"ank9","hypothetical protein","","","",1e-11,"PHYPADRAFT_151349","hypothetical protein"]
["TRINITY_DN22580_c0_g1_i1@@W-35D-3@@KO",0,0,1.5712512317956984,0,"","","",1e-11,"AN8019.2","hypothetical protein","","","",8e-13,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN31943_c1_g2_i2@@W-25D-2@@KO",12.152730127184432,8.511568432941408,5.04134082222832,4.516043120322006,6e-17,"ANK1","ankyrin-like1 \\\\ Encodes a member of the ankyrin repeat protein.  Localized in the endoplasmic reticulum. \\\\ ankyrin-like1 (ANK1); LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 75028 Blast hits to 30555 proteins in 1218 species: Archae - 81; Bacteria - 7319; Metazoa - 34469; Fungi - 7763; Plants - 5551; Viruses - 723; Other Eukaryotes - 19122 (source: NCBI BLink).",4e-25,"AN8019.2","hypothetical protein","","","",5e-22,"ank9","hypothetical protein",9e-12,"YAR1","Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone; prevents aggregation of Rps3p in the cytoplasm, associates with free Rps3p in the cytoplasm and delivers it to the 90S in the nucleus; required for 40S ribosomal subunit export, biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock",5E-15,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN22202_c0_g1_i1@@W-35D-5@@WT",2.5353511361430723,1.4669570977150777,1.0530726340758403,1.8824205864687023,6e-16,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",2e-22,"AN8019.2","hypothetical protein","","","",3E-23,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN7990_c0_g1_i1@@W-35D-3@@KO",0.07602009786202514,0.17796357934772952,1.7099284660189624,0,1e-11,"EMB506","Ankyrin repeat family protein \\\\ Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality. \\\\ embryo defective 506 (EMB506); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 90387 Blast hits to 29284 proteins in 1374 species: Archae - 134; Bacteria - 8440; Metazoa - 46466; Fungi - 7182; Plants - 3258; Viruses - 1346; Other Eukaryotes - 23561 (source: NCBI BLink).",1e-12,"AN8767.2","hypothetical protein","","","",2e-11,"ank9","hypothetical protein","","","","","",""]
["Contig13519@@KO",0.40090784069101926,0,10.473641447362679,0.044548023886345704,"","","",4e-11,"AN8767.2","hypothetical protein","","","",9e-15,"ank9","hypothetical protein","","","","","",""]
["Contig12000",0.7732998262518619,0.8115139218256466,3.223872823240367,0.21333705962064137,"","","",3E-11,"AN8767.2","hypothetical protein","","","",2e-24,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN3388_c0_g1_i1@@W-35D-3@@KO",0,0,2.154592339617945,0,"","","",9e-11,"AN8767.2","hypothetical protein","","","",9E-13,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN22034_c0_g1_i1@@W-35D-3@@KO",0.11240325753918114,0,1.9752335149781304,0.07494006093461787,4e-13,"AT1G05640","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G31820.1); Has 67578 Blast hits to 27690 proteins in 1106 species: Archae - 88; Bacteria - 6425; Metazoa - 32117; Fungi - 6903; Plants - 5434; Viruses - 485; Other Eukaryotes - 16126 (source: NCBI BLink).",2E-19,"AN8767.2","hypothetical protein","","","",9e-19,"ank9","hypothetical protein",3E-11,"Z48952","Component of a complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth",5e-12,"PHYPADRAFT_170846","hypothetical protein"]
["Contig17348@@KO",0.1051734363625105,0,2.143895444727962,0,3e-20,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",4e-22,"AN8767.2","hypothetical protein","","","",3e-27,"ank9","hypothetical protein",1e-11,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",9E-13,"PHYPADRAFT_170846","hypothetical protein"]
["TRINITY_DN33726_c1_g1_i1@@W-35D-3@@KO",0,0,2.6570879535573337,0,6e-16,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1e-12,"AN8767.2","hypothetical protein","","","",6e-14,"ank9","hypothetical protein","","","","","",""]
["Contig929",8.917208272153985,3.1403239179778644,4.205795656257665,2.239088849581899,"","","",2e-15,"AN8767.2","hypothetical protein","","","",2e-25,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN27503_c0_g1_i1@@W-35D-3@@KO",0.20666831056289825,0.08063532609555313,1.162153289702872,0,2e-18,"AT2G31820","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G05640.1); Has 69909 Blast hits to 28585 proteins in 1153 species: Archae - 97; Bacteria - 6878; Metazoa - 33005; Fungi - 7349; Plants - 5597; Viruses - 621; Other Eukaryotes - 16362 (source: NCBI BLink).",5e-22,"AN8767.2","hypothetical protein","","","",3E-24,"ank9","hypothetical protein","","","",2e-11,"PHYPADRAFT_209624","hypothetical protein"]
["Contig22530@@KO",0,0,1.4185964756612797,0,4e-11,"KT5","K+ transporter 5 \\\\ Encodes AKT5, a member of the Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500). \\\\ K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1E-14,"AN8767.2","hypothetical protein","","","",2E-14,"ank9","hypothetical protein","","","",6e-13,"PHYPADRAFT_117942","hypothetical protein"]
["TRINITY_DN37240_c0_g1_i1@@W-35D-3@@KO",0.25915942452963114,0,7.7238246050288355,0,7e-12,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",1E-14,"AN8767.2","hypothetical protein","","","",4e-15,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN27622_c0_g1_i1@@W-35D-3@@KO",0,0,1.9792267668495662,0,"","","",7e-14,"AN8767.2","hypothetical protein","","","",5e-11,"ank9","hypothetical protein",9e-14,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate","","",""]
["TRINITY_DN44883_c0_g1_i1@@W-35D-3@@KO",0,0,0.9878302962474411,0,9e-12,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",5e-14,"AN8767.2","hypothetical protein","","","",5e-12,"ank9","hypothetical protein","","","","","",""]
["Contig20430@@KO",0.8948513505283658,0.1208569184609283,19.208683110376835,0.09178520568799106,9e-15,"ITN1","Ankyrin repeat family protein \\\\ Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production. \\\\ INCREASED TOLERANCE TO NACL (ITN1); INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G09550.1); Has 61607 Blast hits to 26705 proteins in 1191 species: Archae - 49; Bacteria - 5778; Metazoa - 28187; Fungi - 6605; Plants - 4929; Viruses - 594; Other Eukaryotes - 15465 (source: NCBI BLink).",9e-29,"AN8767.2","hypothetical protein","","","",2e-22,"ank9","hypothetical protein",2e-13,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate",5e-11,"PHYPADRAFT_151019","hypothetical protein"]
["Contig24686@@KO",0.18723468547498784,0,1.8425270854903402,0.035665917889253315,"","","",7e-11,"AN8767.2","hypothetical protein","","","",2e-13,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN34447_c2_g1_i1@@W-35D-3@@KO",0.05032689405499922,0,2.4762683578018514,0,3e-16,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2e-18,"AN8767.2","hypothetical protein","","","",1e-16,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN19854_c0_g1_i1@@W-35D-3@@KO",0.07864148054692256,0,1.437224357214214,0,3e-12,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",5e-17,"AN8767.2","hypothetical protein","","","",5E-15,"ank9","hypothetical protein",6E-11,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate","","",""]
["Contig19470@@KO",0.34711446553821895,0.06771644875047118,24.88699291080002,0,3e-12,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2E-14,"AN8767.2","hypothetical protein","","","",5e-12,"ank9","hypothetical protein","","","",9e-11,"PHYPADRAFT_130242","hypothetical protein"]
["TRINITY_DN36590_c0_g1_i2@@W-35D-3@@KO",0.225919998860033,0,4.891081880446576,0,3E-11,"AT2G14255","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Ankyrin repeat family protein with DHHC zinc finger domain; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT5G20350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",2E-12,"ank9","hypothetical protein",4e-11,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",1e-11,"PHYPADRAFT_135531","hypothetical protein"]
["TRINITY_DN37650_c0_g3_i1@@W-35D-3@@KO",0.08771549753310592,0.10267129577753627,4.069300916727819,0,"","","","","","","","","",2e-11,"ank9","hypothetical protein","","","","","",""]
["Contig6556@@WT",3.24823506606854,2.1291594650597925,4.201117351856934,0.25987460411060137,"","","","","","","","","",3E-11,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN17282_c1_g1_i1@@W-35D-3@@KO",0,0,0.8792029097185129,0,2E-12,"AKR2","ankyrin repeat-containing protein 2 \\\\ Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. \\\\ ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",7e-12,"ank9","hypothetical protein","","","",2E-12,"PHYPADRAFT_109446","hypothetical protein"]
["TRINITY_DN9050_c0_g1_i1@@W-25D-2@@KO",1.0799116705633478,0.07900252354221637,0.7590803937934646,0.26999433168500175,"","","","","","","","","",2e-15,"ank9","hypothetical protein","","","","","",""]
["Contig20621@@KO",0.37498375195402783,0,5.974473618650389,0.055556525942875364,"","","","","","","","","",1e-12,"ank9","hypothetical protein",5e-11,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",1e-11,"PHYPADRAFT_135531","hypothetical protein"]
["TRINITY_DN68_c0_g1_i1@@W-35D-3@@KO",0.9255262399900924,0.9848469925068528,2.483961618719294,0,6E-11,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).","","","","","","",9e-15,"ank9","hypothetical protein","","","","","",""]
["Contig7092@@WT",7.111651139687924,10.763400299023367,2.511049531682427,5.910196530839015,"","","","","","","","","",2E-12,"ank9","hypothetical protein","","","","","",""]
["Contig13806",7.493881547354731,3.8935977202309595,3.617561219117826,4.837215943624165,"","","","","","","","","",2E-12,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN51936_c0_g1_i1@@W-35D-3@@KO",0,0,0.9154074011218318,0,"","","","","","","","","",7e-13,"ank9","hypothetical protein","","","","","",""]
["TRINITY_DN29999_c0_g1_i1@@W-35D-3@@KO",0.420693745450042,0.07034621375048948,2.8726086747093875,0,"","","","","","","","","",6E-11,"ank9","hypothetical protein",5e-13,"Z38125","Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate","","",""]
["Contig6551",73.53793154113953,101.43924022820583,18.504833849224088,44.8432376565776,1E-25,"AT3G44620","protein tyrosine phosphatases;protein tyrosine phosphatases \\\\ protein tyrosine phosphatases;protein tyrosine phosphatases; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 5215 Blast hits to 5214 proteins in 1894 species: Archae - 4; Bacteria - 4223; Metazoa - 305; Fungi - 139; Plants - 47; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).","","","",1E-13,"yfkj","low molecular weight protein-tyrosine-phosphatase YfkJ",5e-27,"chlredraft_117512","hypothetical protein",1e-11,"LTP1","Protein phosphotyrosine phosphatase of unknown cellular role; activated by adenine",2e-26,"PHYPADRAFT_119767","hypothetical protein"]
["Contig17551@@KO",0,0.12765005062274223,3.475085326284343,0,3e-14,"ITN1","Ankyrin repeat family protein \\\\ Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production. \\\\ INCREASED TOLERANCE TO NACL (ITN1); INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G09550.1); Has 61607 Blast hits to 26705 proteins in 1191 species: Archae - 49; Bacteria - 5778; Metazoa - 28187; Fungi - 6605; Plants - 4929; Viruses - 594; Other Eukaryotes - 15465 (source: NCBI BLink).",4e-18,"AN8019.2","hypothetical protein","","","",2e-18,"ank3","hypothetical protein","","","",8E-14,"PHYPADRAFT_170846","hypothetical protein"]
["Contig24100@@KO",0.04061054899845767,0,1.4272774508417418,0,9E-13,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",7e-14,"AN8767.2","hypothetical protein","","","",3e-14,"ank3","hypothetical protein","","","",7e-11,"PHYPADRAFT_170846","hypothetical protein"]
["Contig5067",0.7944815975768633,0.08796762656063438,16.391227685751026,0.042947562175860036,7e-22,"AT3G44830","Lecithin:cholesterol acyltransferase family protein \\\\ Lecithin:cholesterol acyltransferase family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: phospholipid:diacylglycerol acyltransferase (TAIR:AT5G13640.1); Has 743 Blast hits to 672 proteins in 235 species: Archae - 0; Bacteria - 21; Metazoa - 207; Fungi - 173; Plants - 213; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).",8e-27,"AN1130.2","hypothetical protein","","","",2e-23,"ank5","hypothetical protein",5e-26,"LRO1","Acyltransferase that catalyzes diacylglycerol esterification; one of several acyltransferases that contribute to triglyceride synthesis; putative homolog of human lecithin cholesterol acyltransferase",1e-17,"PHYPADRAFT_198457","hypothetical protein"]
["TRINITY_DN32126_c0_g1_i1@@W-35D-3@@KO",1.183749331194439,0.802179469813274,0.7882757935547517,0.9969021477600064,5e-13,"AT3G04710","ankyrin repeat family protein \\\\ ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).",1E-14,"AN1130.2","hypothetical protein","","","",1e-17,"ank5","hypothetical protein","","","","","",""]
["TRINITY_DN50688_c0_g1_i1@@W-35D-3@@KO",0,0,0.8032905705748422,0,7e-14,"AT2G03430","Ankyrin repeat family protein \\\\ Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).",2E-19,"AN8019.2","hypothetical protein","","","",1e-18,"ank5","hypothetical protein","","","","","",""]
["Contig5736",4.03640528120655,3.1928982462302136,2.85018382654692,3.6618627222917763,5e-14,"TIP1","Ankyrin repeat family protein with DHHC zinc finger domain \\\\ Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. \\\\ TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).",1e-18,"AN0782.2","hypothetical protein","","","",2e-32,"ank5","hypothetical protein","","","","","",""]
["Contig12161",27.831692225099644,18.572915720634292,18.6088657635125,6.29834035623929,"","","",2e-13,"AN8767.2","hypothetical protein","","","",4e-20,"ank5","hypothetical protein","","","","","",""]
["TRINITY_DN18790_c0_g1_i1@@W-35D-3@@KO",0,0,1.3213926594777774,0,5e-12,"SKOR","STELAR K+ outward rectifier \\\\ Encodes SKOR, a member of Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).  Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. \\\\ STELAR K+ outward rectifier (SKOR); FUNCTIONS IN: outward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, response to abscisic acid stimulus; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: gated outwardly-rectifying K+ channel (TAIR:AT5G37500.1); Has 82938 Blast hits to 34972 proteins in 1815 species: Archae - 147; Bacteria - 10317; Metazoa - 39460; Fungi - 7131; Plants - 3765; Viruses - 1138; Other Eukaryotes - 20980 (source: NCBI BLink).",5e-18,"AN8767.2","hypothetical protein","","","",8e-11,"ank5","hypothetical protein","","","","","",""]
["Contig20707@@KO",1.6804442685289767,0.21074634396441655,38.13590460397554,0.16005204149748026,7e-14,"ACBP2","acyl-CoA binding protein 2 \\\\ Encodes acyl-CoA-binding protein with ankyrin repeats \\\\ acyl-CoA binding protein 2 (ACBP2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 1 (TAIR:AT5G53470.1); Has 90208 Blast hits to 29988 proteins in 1366 species: Archae - 152; Bacteria - 8068; Metazoa - 46498; Fungi - 7104; Plants - 3511; Viruses - 860; Other Eukaryotes - 24015 (source: NCBI BLink).",2e-11,"AN3775.2","hypothetical protein","","","",3e-12,"ank1","hypothetical protein","","","",8E-14,"PHYPADRAFT_117942","hypothetical protein"]
["TRINITY_DN16754_c0_g1_i1@@W-35D-3@@KO",0.08099337529225108,0,1.4232757383627463,0,"","","","","","","","","",1E-10,"ank1","hypothetical protein","","","","","",""]
["TRINITY_DN33746_c0_g1_i1@@W-35D-3@@KO",0.09481718989355432,0.11098385145317925,6.398200605891522,0,"","","","","","","","","",2E-14,"chlredraft_206213","YCII-related protein","","","","","",""]
["TRINITY_DN21993_c0_g1_i1@@W-35D-3@@KO",0.18790744050890862,0,2.0076458463774247,0,"","","","","","","","","",1e-157,"fum1","fumarate hydratase","","","","","",""]
["TRINITY_DN3618_c0_g1_i1@@W-35D-3@@KO",0.2288633227888433,0,0.9652215042558624,0.10172321651512391,3e-61,"FUM2","FUMARASE 2 \\\\ Encodes a fumarase enzyme initially shown to be in the mitochondria through proteomic studies but later shown to be present in the cytosol using an RFP fluorescent protein tag. It appears to be important for the accumulation of fumarate from malate in leaves in the light, and helps to promote nitrogen assimilation under high nitrogen conditions. It does not appear to be necessary for lipid metabolism and seedling growth. \\\\ FUMARASE 2 (FUM2); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: nitrate assimilation, response to salt stress, fumarate metabolic process; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: male gametophyte, guard cell, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Lyase 1, N-terminal (InterPro:IPR022761), Fumarate lyase, conserved site (InterPro:IPR020557), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: fumarase 1 (TAIR:AT2G47510.2); Has 20040 Blast hits to 20032 proteins in 2805 species: Archae - 403; Bacteria - 13208; Metazoa - 329; Fungi - 298; Plants - 117; Viruses - 0; Other Eukaryotes - 5685 (source: NCBI BLink).",9e-62,"AN8707.2","hypothetical protein",2e-42,"fumc","fumarate hydratase class II",8e-54,"fum2","fumarate hydratase",1e-60,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",9e-62,"PHYPADRAFT_181428","hypothetical protein"]
["TRINITY_DN36840_c0_g1_i1@@W-35D-3@@KO",0.14434195796587052,0,4.423628230919309,0.038493528967748415,2E-167,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",1e-160,"AN8707.2","hypothetical protein",3e-154,"fumc","fumarate hydratase class II",7e-147,"fum2","fumarate hydratase",3E-160,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",2E-169,"PHYPADRAFT_181428","hypothetical protein"]
["Contig6657",106.4742597097634,104.11809340324648,124.2083330604809,197.78123235663625,2e-146,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",3E-148,"AN8707.2","hypothetical protein",3e-109,"fumc","fumarate hydratase class II",3E-122,"fum2","fumarate hydratase",6e-135,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",3e-140,"PHYPADRAFT_181428","hypothetical protein"]
["Contig2073@@KO",12.296470374919737,10.291675804167543,9.545883927574469,8.212655306633387,3e-146,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",3E-148,"AN8707.2","hypothetical protein",3e-109,"fumc","fumarate hydratase class II",4e-122,"fum2","fumarate hydratase",7e-135,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",3e-140,"PHYPADRAFT_181428","hypothetical protein"]
["Contig16833@@WT",20.586514001385915,17.89964036921583,14.971416089195044,13.793056290479282,1E-146,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",2e-148,"AN8707.2","hypothetical protein",2E-109,"fumc","fumarate hydratase class II",2e-122,"fum2","fumarate hydratase",3e-135,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",2E-140,"PHYPADRAFT_181428","hypothetical protein"]
["TRINITY_DN5776_c0_g1_i1@@W-25D-2@@KO",0.43044492498034104,0,0.201709276827568,0,2e-31,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",2e-34,"AN8707.2","hypothetical protein",2e-30,"fumc","fumarate hydratase class II",1E-26,"fum2","fumarate hydratase",2e-32,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",2e-28,"PHYPADRAFT_181428","hypothetical protein"]
["Contig8922",21.37855329418807,20.16833200413518,15.520622794010482,17.33079962942598,1E-146,"FUM1","fumarase 1 \\\\ Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. \\\\ fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink).",2e-148,"AN8707.2","hypothetical protein",1e-109,"fumc","fumarate hydratase class II",2e-122,"fum2","fumarate hydratase",3e-135,"FUM1","Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria",2E-140,"PHYPADRAFT_181428","hypothetical protein"]
["Contig11082",18.714663932809675,4.8934934275808715,11.789117336127473,7.181358881242504,"","","","","","","","","",9e-19,"chlredraft_206210","FAD-dependent monooxygenase","","","","","",""]
["Contig21042@@KO",0.07615370084596543,0.035655268973007324,3.404455555256998,0.0203088882181337,1e-64,"ATR2","P450 reductase 2 \\\\ Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. \\\\ P450 reductase 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 6811 Blast hits to 6438 proteins in 1585 species: Archae - 5; Bacteria - 3394; Metazoa - 1038; Fungi - 872; Plants - 570; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).",3e-73,"AN6835.2","hypothetical protein",3e-87,"yeto","bifunctional P-450/NADPH-P450 reductase 1",1E-59,"ncr2","NADPH-cytochrome P450 reductase",2e-38,"YHK8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A",8e-58,"PHYPADRAFT_120835","hypothetical protein"]
["Contig21043@@KO",0.6870219489682453,0,6.41586268287551,0,5e-39,"ATR2","P450 reductase 2 \\\\ Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. \\\\ P450 reductase 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 6811 Blast hits to 6438 proteins in 1585 species: Archae - 5; Bacteria - 3394; Metazoa - 1038; Fungi - 872; Plants - 570; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).",7e-29,"AN0595.2","NCPR_ASPNG NADPH-cytochrome P450 reductase (CPR) (P450R)",5e-40,"yeto","bifunctional P-450/NADPH-P450 reductase 1",5e-37,"ncr2","NADPH-cytochrome P450 reductase",4e-26,"YHK8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A",2e-36,"PHYPADRAFT_201169","hypothetical protein"]
["Contig18031@@KO",0.10827450220228467,0.025347136488807053,2.252773072734877,0,1e-113,"ATR2","P450 reductase 2 \\\\ Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. \\\\ P450 reductase 2 (ATR2); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 6811 Blast hits to 6438 proteins in 1585 species: Archae - 5; Bacteria - 3394; Metazoa - 1038; Fungi - 872; Plants - 570; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink).",6e-89,"AN0595.2","NCPR_ASPNG NADPH-cytochrome P450 reductase (CPR) (P450R)",2e-77,"cypb","bifunctional P-450/NADPH-P450 reductase 2",4e-106,"ncr2","NADPH-cytochrome P450 reductase",6e-75,"YHK8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A",7e-111,"PHYPADRAFT_120835","hypothetical protein"]
["TRINITY_DN48165_c0_g1_i1@@W-35D-3@@KO",0.07835706289575828,0,1.1015587993114926,0,2e-20,"ATR1","P450 reductase 1 \\\\ Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism. \\\\ P450 reductase 1 (ATR1); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: response to oxidative stress, phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: P450 reductase 2 (TAIR:AT4G30210.2); Has 6349 Blast hits to 5969 proteins in 1541 species: Archae - 6; Bacteria - 2994; Metazoa - 1048; Fungi - 898; Plants - 566; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).",1E-42,"AN1752.2","hypothetical protein",9e-21,"cypb","bifunctional P-450/NADPH-P450 reductase 2",1E-22,"ncr2","NADPH-cytochrome P450 reductase",2e-42,"MET10","Subunit alpha of assimilatory sulfite reductase, which converts sulfite into sulfide",3e-19,"PHYPADRAFT_147471","hypothetical protein"]
["Contig12399@@KO",0.32417547966100496,0.01581035539716425,13.121289060763885,0.018010843821879792,3e-16,"CTR1","Protein kinase superfamily protein \\\\ Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. \\\\ CONSTITUTIVE TRIPLE RESPONSE 1 (CTR1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24480.1); Has 126606 Blast hits to 124675 proteins in 4966 species: Archae - 112; Bacteria - 13843; Metazoa - 48138; Fungi - 11278; Plants - 33351; Viruses - 509; Other Eukaryotes - 19375 (source: NCBI BLink).",6e-12,"AN5674.2","hypothetical protein","","","",7e-12,"chlredraft_126497","serine/threonine protein kinase",1e-12,"CDC15","Protein kinase of the Mitotic Exit Network; localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p; required for spindle disassembly after meiosis II; relocalizes to the cytoplasm upon DNA replication stress",1e-16,"PHYPADRAFT_203860","hypothetical protein"]
["Contig23175@@KO",0,0.05465476305399021,1.4441340897008208,0,1e-30,"AT2G43760","molybdopterin biosynthesis MoaE family protein \\\\ molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 4667 Blast hits to 4667 proteins in 1622 species: Archae - 178; Bacteria - 3163; Metazoa - 146; Fungi - 92; Plants - 52; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).",9e-20,"AN4841.2","similar to AF138285_1 molybdopterin synthase large subunit CnxH",2e-24,"moae","molybdopterin synthase catalytic subunit",9e-32,"chlredraft_98436","molybdopterin synthase","","","",8e-29,"PHYPADRAFT_124904","hypothetical protein"]
["Contig3687",22.310541220756843,12.26478909009185,21.075917964951916,25.665130823967598,9e-31,"AT2G43760","molybdopterin biosynthesis MoaE family protein \\\\ molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 4667 Blast hits to 4667 proteins in 1622 species: Archae - 178; Bacteria - 3163; Metazoa - 146; Fungi - 92; Plants - 52; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).",3e-17,"AN4841.2","similar to AF138285_1 molybdopterin synthase large subunit CnxH",2e-25,"moae","molybdopterin synthase catalytic subunit",1e-33,"chlredraft_98436","molybdopterin synthase","","","",3e-30,"PHYPADRAFT_124904","hypothetical protein"]
["Contig3686",17.00388272091074,8.65674041334798,16.484252949901077,19.554600407727158,2e-28,"AT2G43760","molybdopterin biosynthesis MoaE family protein \\\\ molybdopterin biosynthesis MoaE family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin biosynthesis MoaE (InterPro:IPR003448); Has 4667 Blast hits to 4667 proteins in 1622 species: Archae - 178; Bacteria - 3163; Metazoa - 146; Fungi - 92; Plants - 52; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).",6e-15,"AN4841.2","similar to AF138285_1 molybdopterin synthase large subunit CnxH",4e-23,"moae","molybdopterin synthase catalytic subunit",2e-31,"chlredraft_98436","molybdopterin synthase","","","",6e-28,"PHYPADRAFT_124904","hypothetical protein"]
["Contig14204@@KO",0.3024883475138173,0,1.8072869585213511,0,6E-34,"AT3G21060","Transducin/WD40 repeat-like superfamily protein \\\\ Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).",7e-25,"AN0808.2","hypothetical protein","","","",1e-28,"chlredraft_147395","hypothetical protein",1e-28,"SWD1","Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member with similarity to mammalian Rbbp7",1e-33,"SWDA1501","WD40 repeat protein, COMPASS complex protein"]
["Contig15015",4.666464468761235,2.5143059543743327,2.707386737863357,3.358083345880466,4e-11,"AT3G21060","Transducin/WD40 repeat-like superfamily protein \\\\ Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).","","","","","","",3e-13,"chlredraft_147395","hypothetical protein","","","",2e-13,"SWDA1501","WD40 repeat protein, COMPASS complex protein"]
["Contig13308@@KO",0.20765873377645847,0,3.746443708744622,0,6e-16,"AT5G18230","transcription regulator NOT2/NOT3/NOT5 family protein \\\\ transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-17,"AN4585.2","hypothetical protein","","","",4e-11,"ccr4","not-complex component","","","",7e-18,"PHYPADRAFT_235144","hypothetical protein"]
["TRINITY_DN35509_c0_g1_i1@@W-35D-3@@KO",0,0,1.408467089061862,0,1e-32,"AT5G18230","transcription regulator NOT2/NOT3/NOT5 family protein \\\\ transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",9e-26,"AN4585.2","hypothetical protein","","","",9e-20,"ccr4","not-complex component",2e-25,"NOT5","Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation",1e-34,"PHYPADRAFT_235144","hypothetical protein"]
["Contig16621@@KO",0.402148081497488,0,2.6854009986927734,0,2e-17,"Y14","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm. \\\\ Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).",1e-17,"AN4505.2","hypothetical protein","","","",5e-18,"rbm8a","RNA binding motif protein","","","",1e-20,"PHYPADRAFT_119944","hypothetical protein"]
["TRINITY_DN28770_c0_g1_i1@@W-25D-4@@WT",0,0.5747265735309113,0.17256714334823098,0,6e-12,"Y14","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm. \\\\ Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).","","","","","","",5e-14,"rbm8a","RNA binding motif protein","","","",1e-18,"PHYPADRAFT_119944","hypothetical protein"]
["TRINITY_DN2418_c0_g1_i1@@W-25D-4@@WT",0.226866260635363,0.7081273314359918,0.4252439902403179,0.5041778968637903,1e-19,"AT3G07810","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54138 Blast hits to 30457 proteins in 1475 species: Archae - 38; Bacteria - 13880; Metazoa - 18730; Fungi - 4978; Plants - 7803; Viruses - 149; Other Eukaryotes - 8560 (source: NCBI BLink).",2E-16,"AN7446.2","hypothetical protein","","","",9e-14,"chlredraft_99772","hypothetical protein",2E-19,"HRP1","Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences",7e-15,"PHYPADRAFT_113207","hypothetical protein"]
["TRINITY_DN26938_c0_g1_i1@@W-25D-4@@WT",0.13977888961727203,0.4908350333622863,0.19650387613524367,0.3727663676167121,3e-16,"AT4G14300","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G33410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-21,"AN7446.2","hypothetical protein","","","",3e-15,"chlredraft_99772","hypothetical protein",1e-21,"HRP1","Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences",5e-16,"PHYPADRAFT_113207","hypothetical protein"]
["Contig9231",0.2850753669825943,0.2224544741846619,0.13358816140773144,0.2534157323710104,4e-21,"AT2G33410","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G14300.1); Has 110468 Blast hits to 48661 proteins in 2208 species: Archae - 78; Bacteria - 27657; Metazoa - 45421; Fungi - 8288; Plants - 12503; Viruses - 709; Other Eukaryotes - 15812 (source: NCBI BLink).",1E-26,"AN7446.2","hypothetical protein","","","",3e-15,"chlredraft_99772","hypothetical protein",3e-25,"HRP1","Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences",2E-19,"PHYPADRAFT_139747","hypothetical protein"]
["Contig22745@@KO",0.18105065089702366,0,7.508473317228983,0,"","","","","","","","","",4e-11,"chlredraft_147390","hypothetical protein","","","","","",""]
["Contig7012",9.265638014777267,7.660171458880532,11.058776492187855,5.200531551265953,5e-12,"AT3G22142","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \\\\ Encodes a Protease inhibitor/seed storage/LTP family protein \\\\ Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: cell wall-plasma membrane linker protein (TAIR:AT3G22120.1); Has 868043 Blast hits to 50304 proteins in 2295 species: Archae - 3779; Bacteria - 237100; Metazoa - 274797; Fungi - 91038; Plants - 103297; Viruses - 25718; Other Eukaryotes - 132314 (source: NCBI BLink).","","","","","","",2e-13,"chlredraft_106896","hypothetical protein",1E-10,"FLO11","GPI-anchored cell surface glycoprotein (flocculin); required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p); required for formation of fibrous interconnections between cells in a colony of a wild S. cerevisiae strain; a portion is cleaved and shed from cells, and free extracellular Flo11p contributes to the surface properties of cells","","",""]
["Contig13197@@WT",4.313449461871181,3.734808390220305,4.790228580515054,3.5192533888177775,"","","","","","","","","",2e-13,"chlredraft_106896","hypothetical protein","","","","","",""]
["Contig16818@@KO",0.2642161937887459,0.08836170751585874,5.306289338146824,0,2e-60,"ATJ3","DNAJ homologue 3 \\\\ homologous to the co-chaperon DNAJ protein from E coli \\\\ DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26899 Blast hits to 26588 proteins in 3465 species: Archae - 213; Bacteria - 10134; Metazoa - 4292; Fungi - 2434; Plants - 2563; Viruses - 88; Other Eukaryotes - 7175 (source: NCBI BLink).",3e-60,"AN2731.2","hypothetical protein",2e-38,"dnaj","chaperone protein DnaJ",4e-57,"erj1","ER DnaJ-like protein 1",1e-57,"YDJ1","Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family",1e-60,"PHYPADRAFT_131806","hypothetical protein"]
["Contig13612",59.306394570720464,25.134683805892255,49.591832009087156,40.33954997026075,3E-49,"ATJ3","DNAJ homologue 3 \\\\ homologous to the co-chaperon DNAJ protein from E coli \\\\ DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26899 Blast hits to 26588 proteins in 3465 species: Archae - 213; Bacteria - 10134; Metazoa - 4292; Fungi - 2434; Plants - 2563; Viruses - 88; Other Eukaryotes - 7175 (source: NCBI BLink).",3e-40,"AN2731.2","hypothetical protein",2e-29,"dnaj","chaperone protein DnaJ",4E-41,"erj1","ER DnaJ-like protein 1",1E-42,"YDJ1","Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family",1E-50,"PHYPADRAFT_151688","hypothetical protein"]
["Contig15739",104.80965483982698,89.72819641897873,48.91100445950013,86.1977477585175,2e-64,"AT5G02240","NAD(P)-binding Rossmann-fold superfamily protein \\\\ Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. \\\\ NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1E-41,"chlredraft_196378","isomerase","","","",2e-56,"PHYPADRAFT_108314","hypothetical protein"]
["TRINITY_DN28324_c0_g1_i1@@W-35D-3@@KO",0.05294008036817878,0,2.009453198841771,0.03529553266987805,3E-32,"AT1G03620","ELMO/CED-12 family protein \\\\ ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1); Has 828 Blast hits to 828 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 41; Plants - 178; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).",3e-15,"AN8877.2","hypothetical protein","","","",1E-10,"ssa3","hypothetical protein","","","",4e-34,"PHYPADRAFT_105068","hypothetical protein"]
["Contig13929@@KO",0.2956337139078755,0,1.2468228398054935,0,6e-39,"RPN12a","regulatory particle non-ATPase 12A \\\\ regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).",3e-25,"AN3019.2","hypothetical protein","","","",1e-36,"rpn12","26S proteasome regulatory subunit",3e-15,"RPN12","Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p; protein abundance increases in response to DNA replication stress",1E-42,"PHYPADRAFT_183729","hypothetical protein"]
["Contig3345",95.25703829602799,48.838271601164955,90.79788111596622,77.329973793856,1E-42,"RPN12a","regulatory particle non-ATPase 12A \\\\ regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).",2e-18,"AN3019.2","hypothetical protein","","","",1E-35,"rpn12","26S proteasome regulatory subunit",8e-22,"RPN12","Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p; protein abundance increases in response to DNA replication stress",2e-43,"PHYPADRAFT_162856","hypothetical protein"]
["TRINITY_DN35948_c0_g1_i1@@W-35D-3@@KO",0.5597174051412831,0,2.6228719742486777,0.062194603854241526,2e-43,"RPN12a","regulatory particle non-ATPase 12A \\\\ regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).",1e-29,"AN3019.2","hypothetical protein","","","",4E-41,"rpn12","26S proteasome regulatory subunit",4e-25,"RPN12","Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p; protein abundance increases in response to DNA replication stress",4e-47,"PHYPADRAFT_183729","hypothetical protein"]
["Contig2060",86.41244072004186,39.490941210229266,74.78960242918488,62.821906537855774,2E-121,"AT5G23540","Mov34/MPN/PAD-1 family protein \\\\ Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-102,"AN4492.2","hypothetical protein","","","",8e-124,"rpn11","26S proteasome regulatory subunit",2e-97,"RPN11","Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress",1e-123,"PHYPADRAFT_217733","hypothetical protein"]
["Contig16645@@KO",0.36965222941439707,0,12.240980795837169,0.10953324546083483,5e-124,"AT5G23540","Mov34/MPN/PAD-1 family protein \\\\ Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-107,"AN4492.2","hypothetical protein","","","",2e-115,"rpn11","26S proteasome regulatory subunit",1e-96,"RPN11","Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress",5e-125,"PHYPADRAFT_217733","hypothetical protein"]
["TRINITY_DN13773_c0_g1_i1@@W-35D-3@@KO",0,0,1.2917498107551175,0,7e-41,"AT4G01020","helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related \\\\ helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), K Homology (InterPro:IPR004087), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, C2H2-type (InterPro:IPR007087), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits to 12409 proteins in 1676 species: Archae - 4; Bacteria - 3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses - 760; Other Eukaryotes - 2113 (source: NCBI BLink).",9e-33,"AN0133.2","hypothetical protein","","","",2e-30,"ssa9","DEAD/DEAH box helicase",6e-33,"PRP43","RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript metabolism, involved in release of the lariat-intron from the spliceosome",9e-35,"PHYPADRAFT_176656","hypothetical protein"]
["Contig21640@@KO",0.06068831341926376,0,12.114986873212082,0,4e-16,"AT4G15930","Dynein light chain type 1 family protein \\\\ Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2, conserved site (InterPro:IPR019763), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1403 Blast hits to 1403 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 108; Plants - 264; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).","","","","","","",3e-13,"fla14","outer dynein arm light chain 8","","","",4E-14,"PHYPADRAFT_151365","hypothetical protein"]
["Contig9601",0.42551347739464157,0.08301083488396549,10.767511903450014,0.6619500963406426,5e-23,"AT4G15930","Dynein light chain type 1 family protein \\\\ Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2, conserved site (InterPro:IPR019763), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT5G20110.1); Has 1403 Blast hits to 1403 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 108; Plants - 264; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).","","","","","","",9e-21,"fla14","outer dynein arm light chain 8",1e-17,"DYN2","Cytoplasmic light chain dynein, microtubule motor protein; proposed to be involved in the assembly of the nuclear pore complex",2e-21,"PHYPADRAFT_142110","hypothetical protein"]
["Contig11261",36.133754001658225,20.098948156948044,38.04710245304623,34.32296656761328,3e-59,"RPN10","regulatory particle non-ATPase 10 \\\\ Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities \\\\ regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).",1e-28,"AN7579.2","hypothetical protein","","","",2E-52,"rpn10","26S proteasome regulatory subunit",2E-50,"RPN10","Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein",2e-56,"PHYPADRAFT_159668","hypothetical protein"]
["TRINITY_DN35077_c0_g1_i1@@W-25D-2@@KO",40.48782899570295,27.314628748949175,47.019693111486276,44.959118619271884,1e-49,"RPN10","regulatory particle non-ATPase 10 \\\\ Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities \\\\ regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).",1e-24,"AN7579.2","hypothetical protein","","","",3e-46,"rpn10","26S proteasome regulatory subunit",2e-42,"RPN10","Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein",2e-49,"PHYPADRAFT_159668","hypothetical protein"]
["Contig18831@@KO",0.8262353856614173,0,11.486317674939349,0.2448253685618236,5e-54,"RPN10","regulatory particle non-ATPase 10 \\\\ Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities \\\\ regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).",1E-27,"AN7579.2","hypothetical protein","","","",3e-55,"rpn10","26S proteasome regulatory subunit",2e-44,"RPN10","Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein",1E-58,"PHYPADRAFT_159668","hypothetical protein"]
["Contig2357",34.85745075496976,16.985053381864184,29.89231564676532,25.6695230084047,6E-98,"NTRA","NADPH-dependent thioredoxin reductase A \\\\ NADPH-dependent thioredoxin reductase, major cytosolic isoform \\\\ NADPH-dependent thioredoxin reductase A (NTRA); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, mitochondrial matrix; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Thioredoxin reductase (InterPro:IPR005982); BEST Arabidopsis thaliana protein match is: NADPH-dependent thioredoxin reductase B (TAIR:AT4G35460.1); Has 20135 Blast hits to 20133 proteins in 2901 species: Archae - 588; Bacteria - 13597; Metazoa - 140; Fungi - 273; Plants - 163; Viruses - 0; Other Eukaryotes - 5374 (source: NCBI BLink).",2E-95,"AN3581.2","TRXB_PENCH Thioredoxin reductase",2e-47,"trxb","thioredoxin",5e-96,"ntr3","NADPH dependent thioredoxin reductase",2e-94,"TRR1","Cytoplasmic thioredoxin reductase; key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress; protein abundance increases in response to DNA replication stress; TRR1 has a paralog, TRR2, that arose from the whole genome duplication",4e-102,"PHYPADRAFT_159009","hypothetical protein"]
["Contig24382@@KO",0.17229207070121005,0.057619562753880055,3.356359872415096,0.03281953250814563,1e-72,"AT2G28620","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45850.2); Has 49289 Blast hits to 35260 proteins in 1950 species: Archae - 481; Bacteria - 7561; Metazoa - 22029; Fungi - 4505; Plants - 3473; Viruses - 125; Other Eukaryotes - 11115 (source: NCBI BLink).",2e-102,"AN5343.2","similar to kinesin (KINA protein)",6E-11,"smc","chromosome partition protein Smc",5e-73,"fla10","kinesin-ii motor protein",6e-60,"KIP1","Kinesin-related motor protein required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions",5e-68,"PHYPADRAFT_143852","hypothetical protein"]
["TRINITY_DN31650_c0_g1_i1@@W-35D-3@@KO",0.03875801053788402,0,2.34293083084329,0,8e-65,"PAKRP1","phragmoplast-associated kinesin-related protein 1 \\\\ Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast. \\\\ phragmoplast-associated kinesin-related protein 1 (PAKRP1); CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin-related protein (InterPro:IPR010544), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein, putative (TAIR:AT3G23670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1E-83,"AN5343.2","similar to kinesin (KINA protein)","","","",2e-69,"fla10","kinesin-ii motor protein",5E-51,"KIP1","Kinesin-related motor protein required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions",4e-67,"PHYPADRAFT_786","hypothetical protein"]
["Contig21837@@KO",0.05671656515884074,0,4.385328649353278,0,7e-31,"GR1","glutathione-disulfide reductase \\\\ Encodes a cytosolic glutathione reductase. \\\\ glutathione-disulfide reductase (GR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction, glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: glutathione reductase (TAIR:AT3G54660.1); Has 36408 Blast hits to 36344 proteins in 3180 species: Archae - 854; Bacteria - 26624; Metazoa - 911; Fungi - 472; Plants - 667; Viruses - 0; Other Eukaryotes - 6880 (source: NCBI BLink).",4e-24,"AN0932.2","hypothetical protein",6e-15,"pdhd","dihydrolipoyl dehydrogenase",6e-61,"ntr1","NADPH-dependent thioredoxin reductase 1",3e-25,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",9e-33,"PHYPADRAFT_215547","hypothetical protein"]
["TRINITY_DN32431_c1_g1_i1@@W-35D-3@@KO",0.04669337907473527,0,1.772346382814644,0.12452324780299649,3e-30,"GR","glutathione reductase \\\\ Encodes glutathione reductase that is most likely localized in the chloroplast. \\\\ glutathione reductase (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, copper ion binding, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: glutathione-disulfide reductase (TAIR:AT3G24170.3); Has 33740 Blast hits to 33692 proteins in 3140 species: Archae - 759; Bacteria - 24408; Metazoa - 813; Fungi - 438; Plants - 579; Viruses - 0; Other Eukaryotes - 6743 (source: NCBI BLink).",2E-35,"AN0932.2","hypothetical protein",1e-18,"pdhd","dihydrolipoyl dehydrogenase",8E-55,"ntr1","NADPH-dependent thioredoxin reductase 1",5e-34,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",4e-32,"PHYPADRAFT_115450","hypothetical protein"]
["Contig11687@@KO",0,0,2.111480124850105,0,4e-31,"GR","glutathione reductase \\\\ Encodes glutathione reductase that is most likely localized in the chloroplast. \\\\ glutathione reductase (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, copper ion binding, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: glutathione-disulfide reductase (TAIR:AT3G24170.3); Has 33740 Blast hits to 33692 proteins in 3140 species: Archae - 759; Bacteria - 24408; Metazoa - 813; Fungi - 438; Plants - 579; Viruses - 0; Other Eukaryotes - 6743 (source: NCBI BLink).",2E-41,"AN0932.2","hypothetical protein",1e-24,"pdhd","dihydrolipoyl dehydrogenase",3E-28,"ntr1","NADPH-dependent thioredoxin reductase 1",3e-46,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",3e-30,"PHYPADRAFT_115450","hypothetical protein"]
["TRINITY_DN21138_c0_g1_i1@@W-35D-3@@KO",0,0,1.8925421856908904,0,2e-36,"GR","glutathione reductase \\\\ Encodes glutathione reductase that is most likely localized in the chloroplast. \\\\ glutathione reductase (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, copper ion binding, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: glutathione-disulfide reductase (TAIR:AT3G24170.3); Has 33740 Blast hits to 33692 proteins in 3140 species: Archae - 759; Bacteria - 24408; Metazoa - 813; Fungi - 438; Plants - 579; Viruses - 0; Other Eukaryotes - 6743 (source: NCBI BLink).",1E-50,"AN0932.2","hypothetical protein",4e-16,"pdhd","dihydrolipoyl dehydrogenase",2e-31,"ntr1","NADPH-dependent thioredoxin reductase 1",2e-56,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",7e-32,"PHYPADRAFT_115450","hypothetical protein"]
["TRINITY_DN16790_c0_g1_i1@@W-35D-3@@KO",0.09565442777340911,0,1.9498563426664908,0,1e-36,"GR","glutathione reductase \\\\ Encodes glutathione reductase that is most likely localized in the chloroplast. \\\\ glutathione reductase (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, copper ion binding, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: glutathione-disulfide reductase (TAIR:AT3G24170.3); Has 33740 Blast hits to 33692 proteins in 3140 species: Archae - 759; Bacteria - 24408; Metazoa - 813; Fungi - 438; Plants - 579; Viruses - 0; Other Eukaryotes - 6743 (source: NCBI BLink).",3e-31,"AN0932.2","hypothetical protein",8e-22,"pdhd","dihydrolipoyl dehydrogenase",1e-72,"ntr1","NADPH-dependent thioredoxin reductase 1",2e-28,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",4e-39,"PHYPADRAFT_215547","hypothetical protein"]
["TRINITY_DN41157_c0_g1_i1@@W-35D-3@@KO",0.08365145903736357,0,1.1759884479136204,0,6e-21,"GR","glutathione reductase \\\\ Encodes glutathione reductase that is most likely localized in the chloroplast. \\\\ glutathione reductase (GR); FUNCTIONS IN: glutathione-disulfide reductase activity, copper ion binding, ATP binding; INVOLVED IN: glutathione metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099); BEST Arabidopsis thaliana protein match is: glutathione-disulfide reductase (TAIR:AT3G24170.3); Has 33740 Blast hits to 33692 proteins in 3140 species: Archae - 759; Bacteria - 24408; Metazoa - 813; Fungi - 438; Plants - 579; Viruses - 0; Other Eukaryotes - 6743 (source: NCBI BLink).",2e-17,"AN0932.2","hypothetical protein","","","",2e-34,"ntr1","NADPH-dependent thioredoxin reductase 1",9e-21,"GLR1","Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; mitochondrial but not cytosolic form has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress",4e-22,"PHYPADRAFT_115450","hypothetical protein"]
["TRINITY_DN6527_c0_g1_i1@@W-35D-3@@KO",0,0,0.9454842820697977,0,2e-37,"AT1G30580","GTP binding \\\\ GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G56050.1); Has 19150 Blast hits to 19146 proteins in 3028 species: Archae - 362; Bacteria - 11244; Metazoa - 716; Fungi - 612; Plants - 292; Viruses - 0; Other Eukaryotes - 5924 (source: NCBI BLink).",1e-33,"AN1284.2","hypothetical protein",3E-34,"yyaf","GTP-dependent nucleic acid-binding protein EngD",5e-40,"chlredraft_53560","hypothetical protein",1e-29,"OLA1","P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; protein abundance increases in response to hydrogen peroxide and to DNA replication stress",8e-38,"PHYPADRAFT_221131","hypothetical protein"]
["Contig10835@@KO",0.26518638789078536,0,4.175406719348629,0.07072066949888663,8e-13,"HK5","histidine kinase 5 \\\\ member of Histidine Kinase \\\\ histidine kinase 5 (HK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 142896 Blast hits to 126384 proteins in 3154 species: Archae - 1152; Bacteria - 126386; Metazoa - 257; Fungi - 2334; Plants - 2049; Viruses - 33; Other Eukaryotes - 10685 (source: NCBI BLink).",4e-24,"AN5296.2","similar to tcsA protein",5e-11,"kind","sporulation kinase D",1E-10,"chlredraft_106887","hypothetical protein",4e-11,"SLN1","Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators",5e-19,"PHYPADRAFT_189323","sensory histidine protein kinase"]
["Contig15472@@KO",0.35007459787449635,0.04552928196957174,3.9918157243631636,0,4E-109,"MAP1A","methionine aminopeptidase 1A \\\\ Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. \\\\ methionine aminopeptidase 1A (MAP1A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity, zinc ion binding; INVOLVED IN: protein processing, N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1B (TAIR:AT1G13270.1); Has 18085 Blast hits to 18064 proteins in 2832 species: Archae - 403; Bacteria - 12111; Metazoa - 396; Fungi - 241; Plants - 256; Viruses - 0; Other Eukaryotes - 4678 (source: NCBI BLink).",9e-118,"AN5199.2","hypothetical protein",2E-50,"mapa","methionine aminopeptidase 1",3e-115,"map1a","methionine aminopeptidase",6e-105,"MAP1","Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p",8e-114,"PHYPADRAFT_63601","hypothetical protein"]
["Contig7150",78.10030818175403,70.78430966136477,56.49619160533658,74.74893630217635,6e-93,"MAP1A","methionine aminopeptidase 1A \\\\ Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. \\\\ methionine aminopeptidase 1A (MAP1A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity, zinc ion binding; INVOLVED IN: protein processing, N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1B (TAIR:AT1G13270.1); Has 18085 Blast hits to 18064 proteins in 2832 species: Archae - 403; Bacteria - 12111; Metazoa - 396; Fungi - 241; Plants - 256; Viruses - 0; Other Eukaryotes - 4678 (source: NCBI BLink).",4e-85,"AN5199.2","hypothetical protein",3e-44,"mapa","methionine aminopeptidase 1",4E-95,"map1a","methionine aminopeptidase",2e-84,"MAP1","Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p",5e-94,"PHYPADRAFT_63601","hypothetical protein"]
["TRINITY_DN31900_c0_g1_i2@@W-25D-2@@KO",2.8274279795187183,0.8405115710260452,2.6499020893639282,3.1118559533823915,7e-129,"ETFQO","electron-transfer flavoprotein:ubiquinone oxidoreductase \\\\ Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. \\\\ electron-transfer flavoprotein:ubiquinone oxidoreductase (ETFQO); FUNCTIONS IN: electron carrier activity, catalytic activity, electron-transferring-flavoprotein dehydrogenase activity; INVOLVED IN: response to absence of light, leucine catabolic process; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein-ubiquinone oxidoreductase (InterPro:IPR007859); Has 5881 Blast hits to 5877 proteins in 1100 species: Archae - 188; Bacteria - 2470; Metazoa - 147; Fungi - 158; Plants - 31; Viruses - 0; Other Eukaryotes - 2887 (source: NCBI BLink).",2E-116,"AN4977.2","hypothetical protein","","","",6e-120,"fuo1","electron transfer flavoprotein-ubiquinone oxidoreductase",3e-86,"CIR2","Putative ortholog of human electron transfer flavoprotein dehydrogenase (ETF-dH); found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response",3e-133,"PHYPADRAFT_55177","hypothetical protein"]
["Contig978",4.034619891124015,1.3977014311193288,3.0267340253148807,3.7875864534249226,1E-155,"ETFQO","electron-transfer flavoprotein:ubiquinone oxidoreductase \\\\ Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. \\\\ electron-transfer flavoprotein:ubiquinone oxidoreductase (ETFQO); FUNCTIONS IN: electron carrier activity, catalytic activity, electron-transferring-flavoprotein dehydrogenase activity; INVOLVED IN: response to absence of light, leucine catabolic process; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein-ubiquinone oxidoreductase (InterPro:IPR007859); Has 5881 Blast hits to 5877 proteins in 1100 species: Archae - 188; Bacteria - 2470; Metazoa - 147; Fungi - 158; Plants - 31; Viruses - 0; Other Eukaryotes - 2887 (source: NCBI BLink).",8E-136,"AN4977.2","hypothetical protein","","","",5e-143,"fuo1","electron transfer flavoprotein-ubiquinone oxidoreductase",2e-104,"CIR2","Putative ortholog of human electron transfer flavoprotein dehydrogenase (ETF-dH); found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response",2E-160,"PHYPADRAFT_55177","hypothetical protein"]
["Contig2137@@WT",2.939332886700184,0.9988546630786131,1.3329584595607338,3.4768416673221774,1E-58,"ETFQO","electron-transfer flavoprotein:ubiquinone oxidoreductase \\\\ Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. \\\\ electron-transfer flavoprotein:ubiquinone oxidoreductase (ETFQO); FUNCTIONS IN: electron carrier activity, catalytic activity, electron-transferring-flavoprotein dehydrogenase activity; INVOLVED IN: response to absence of light, leucine catabolic process; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein-ubiquinone oxidoreductase (InterPro:IPR007859); Has 5881 Blast hits to 5877 proteins in 1100 species: Archae - 188; Bacteria - 2470; Metazoa - 147; Fungi - 158; Plants - 31; Viruses - 0; Other Eukaryotes - 2887 (source: NCBI BLink).",3e-45,"AN4977.2","hypothetical protein","","","",1e-57,"fuo1","electron transfer flavoprotein-ubiquinone oxidoreductase",1e-39,"CIR2","Putative ortholog of human electron transfer flavoprotein dehydrogenase (ETF-dH); found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response",2e-59,"PHYPADRAFT_55177","hypothetical protein"]
["Contig16223@@KO",0.19344399902390325,0,3.9432362644103587,0,5e-160,"ETFQO","electron-transfer flavoprotein:ubiquinone oxidoreductase \\\\ Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. \\\\ electron-transfer flavoprotein:ubiquinone oxidoreductase (ETFQO); FUNCTIONS IN: electron carrier activity, catalytic activity, electron-transferring-flavoprotein dehydrogenase activity; INVOLVED IN: response to absence of light, leucine catabolic process; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein-ubiquinone oxidoreductase (InterPro:IPR007859); Has 5881 Blast hits to 5877 proteins in 1100 species: Archae - 188; Bacteria - 2470; Metazoa - 147; Fungi - 158; Plants - 31; Viruses - 0; Other Eukaryotes - 2887 (source: NCBI BLink).",2e-162,"AN4977.2","hypothetical protein","","","",6e-149,"fuo1","electron transfer flavoprotein-ubiquinone oxidoreductase",7e-138,"CIR2","Putative ortholog of human electron transfer flavoprotein dehydrogenase (ETF-dH); found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response",2E-160,"PHYPADRAFT_55177","hypothetical protein"]
["TRINITY_DN49814_c0_g1_i1@@W-35D-3@@KO",0,0,0.8413840000265959,0,2e-32,"MAP1C","methionine aminopeptidase 1B \\\\ Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. \\\\ methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481; Bacteria - 12145; Metazoa - 393; Fungi - 260; Plants - 253; Viruses - 0; Other Eukaryotes - 4476 (source: NCBI BLink).",4e-26,"AN5055.2","hypothetical protein",1e-18,"mapa","methionine aminopeptidase 1",9e-34,"map1d","methionine aminopeptidase",4e-25,"MAP1","Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p",4e-31,"PHYPADRAFT_153322","hypothetical protein"]
["Contig12220",105.64330979933005,185.69810209381765,92.37527285174625,191.4024041948571,3e-38,"PGR5-LIKE A","PGR5-LIKE A \\\\ Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). \\\\ PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",9e-37,"tef3","hypothetical protein","","","",2e-39,"PHYPADRAFT_138266","hypothetical protein"]
["Contig8931@@KO",279.10555341519404,432.70581277651866,244.59958187985444,504.4560973273411,1e-38,"PGR5-LIKE A","PGR5-LIKE A \\\\ Encodes PGRL1A, a transmembrane protein present in thylakoids.  PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). \\\\ PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3E-37,"tef3","hypothetical protein","","","",5e-40,"PHYPADRAFT_138266","hypothetical protein"]
["Contig14072",24.694497449675872,7.263306533631884,31.09604446118751,30.56393699996159,2e-128,"AT3G03960","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).",2e-126,"AN1851.2","hypothetical protein",1E-10,"groel","chaperonin",4e-126,"cct8","T-complex protein, theta subunit",4e-102,"CCT8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex",8e-134,"PHYPADRAFT_227454","hypothetical protein"]
["TRINITY_DN16861_c0_g1_i1@@W-25D-2@@KO",0.5015214789508603,0,0.1410097259303832,0.13374719208469996,7e-43,"AT3G03960","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).",5e-38,"AN1851.2","hypothetical protein","","","",1e-44,"cct8","T-complex protein, theta subunit",2e-28,"CCT8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex",7e-38,"PHYPADRAFT_227454","hypothetical protein"]
["Contig17546@@KO",0.9623865803743327,0.30978113340096175,16.573536249274575,0.06416300608616365,3e-151,"AT3G03960","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).",5e-138,"AN1851.2","hypothetical protein","","","",5e-148,"cct8","T-complex protein, theta subunit",1e-121,"CCT8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex",1E-153,"PHYPADRAFT_227454","hypothetical protein"]
["TRINITY_DN53842_c0_g1_i1@@W-35D-3@@KO",0,0,0.7874009607769459,0.06789516683970667,7e-65,"AT3G03960","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink).",6e-62,"AN1851.2","hypothetical protein","","","",4e-66,"cct8","T-complex protein, theta subunit",1E-59,"CCT8","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex",1e-71,"PHYPADRAFT_227454","hypothetical protein"]
["TRINITY_DN30287_c0_g1_i4@@W-25D-2@@KO",16.186626457167073,10.898430768319635,11.780488574256674,9.550212724064524,3e-27,"UBC2","ubiquiting-conjugating enzyme 2 \\\\ ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. \\\\ ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).",2E-19,"AN5344.2","similar to UVSJ","","","",2e-24,"ubc10","ubiquitin-conjugating enzyme",7e-18,"RAD6","Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p), DSBR and checkpoint control (as a heterodimer with Bre1p), ubiquitin-mediated N-end rule protein degradation (as a heterodimer with Ubr1p",8e-28,"PHYPADRAFT_213630","hypothetical protein"]
["TRINITY_DN13878_c0_g1_i1@@W-35D-3@@KO",0,0,4.124534483463708,0.4513967732858623,1E-56,"UBC1","ubiquitin carrier protein 1 \\\\ ubiquitin carrier protein \\\\ ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink).",1e-34,"AN5344.2","similar to UVSJ","","","",1e-55,"ubc10","ubiquitin-conjugating enzyme",3e-46,"RAD6","Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p), DSBR and checkpoint control (as a heterodimer with Bre1p), ubiquitin-mediated N-end rule protein degradation (as a heterodimer with Ubr1p",9e-57,"PHYPADRAFT_213630","hypothetical protein"]
["Contig7709",72.05522468666052,61.89930947474797,78.34198698724134,64.47438385111259,2E-70,"UBC2","ubiquiting-conjugating enzyme 2 \\\\ ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. \\\\ ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).",3e-44,"AN5344.2","similar to UVSJ","","","",6e-64,"ubc10","ubiquitin-conjugating enzyme",1E-53,"RAD6","Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p), DSBR and checkpoint control (as a heterodimer with Bre1p), ubiquitin-mediated N-end rule protein degradation (as a heterodimer with Ubr1p",5e-70,"PHYPADRAFT_213630","hypothetical protein"]
["Contig1784@@KO",2.988376260783057,0.22812422839926347,24.567403644554673,0,1e-69,"UBC1","ubiquitin carrier protein 1 \\\\ ubiquitin carrier protein \\\\ ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink).",5e-45,"AN5344.2","similar to UVSJ","","","",5e-69,"ubc10","ubiquitin-conjugating enzyme",2e-57,"RAD6","Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p), DSBR and checkpoint control (as a heterodimer with Bre1p), ubiquitin-mediated N-end rule protein degradation (as a heterodimer with Ubr1p",3e-69,"PHYPADRAFT_213630","hypothetical protein"]
["TRINITY_DN37898_c0_g1_i1@@W-35D-3@@KO",41.33450362707759,13.743017554515394,45.22207748016349,50.78501931719853,2E-171,"AT3G02530","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1); Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805; Bacteria - 8777; Metazoa - 2106; Fungi - 1471; Plants - 861; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).",4e-156,"AN3070.2","hypothetical protein",2e-11,"groel","chaperonin",4e-169,"cct6","T-complex protein, zeta subunit",3e-141,"CCT6","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif",7e-171,"PHYPADRAFT_189840","hypothetical protein"]
["Contig10835",53.47101643419124,21.378319878094377,60.672536795517836,74.01462612213626,4e-178,"AT3G02530","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1); Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805; Bacteria - 8777; Metazoa - 2106; Fungi - 1471; Plants - 861; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).",9e-162,"AN3070.2","hypothetical protein",4e-11,"groel","chaperonin",2e-173,"cct6","T-complex protein, zeta subunit",3e-146,"CCT6","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif",2E-176,"PHYPADRAFT_189840","hypothetical protein"]
["TRINITY_DN56569_c0_g1_i1@@W-35D-3@@KO",0,0,0.745152313173401,0.17669353816694305,2e-37,"AT3G02530","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1); Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805; Bacteria - 8777; Metazoa - 2106; Fungi - 1471; Plants - 861; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).",2e-32,"AN3070.2","hypothetical protein","","","",6e-41,"cct6","T-complex protein, zeta subunit",6e-29,"CCT6","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif",3e-38,"PHYPADRAFT_189840","hypothetical protein"]
["Contig24321@@KO",0.42384047657251067,0.058365500706677696,12.968351319167118,0.06648882276247454,0,"AT5G16070","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G02530.1); Has 18279 Blast hits to 17892 proteins in 3676 species: Archae - 807; Bacteria - 8603; Metazoa - 2077; Fungi - 1456; Plants - 829; Viruses - 0; Other Eukaryotes - 4507 (source: NCBI BLink).",5e-178,"AN3070.2","hypothetical protein","","","",2e-177,"cct6","T-complex protein, zeta subunit",2e-152,"CCT6","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif",6e-180,"PHYPADRAFT_189840","hypothetical protein"]
["Contig8835",57.841774460745846,24.690398250757283,59.94393564633925,62.602553112794354,3e-179,"AT3G11830","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink).",2e-154,"AN5713.2","hypothetical protein",7e-16,"groel","chaperonin",2E-180,"cct7","T-complex protein, eta subunit",2E-155,"CCT7","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo; mutant has increased aneuploidy tolerance",0,"PHYPADRAFT_198264","hypothetical protein"]
["Contig4533",1.0503114986461308,0.142952706071316,13.08290462814748,0,0,"AT3G11830","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink).",2E-169,"AN5713.2","hypothetical protein",9e-21,"groel","chaperonin",0,"cct7","T-complex protein, eta subunit",9e-179,"CCT7","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo; mutant has increased aneuploidy tolerance",0,"PHYPADRAFT_178205","hypothetical protein"]
["Contig12489@@KO",0.24606164554999618,0.11520640571062558,3.6667333161863183,0.19686128443131304,8E-176,"AT3G18190","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, delta subunit (InterPro:IPR012717); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 19273 Blast hits to 19203 proteins in 3973 species: Archae - 808; Bacteria - 9512; Metazoa - 2051; Fungi - 1477; Plants - 841; Viruses - 2; Other Eukaryotes - 4582 (source: NCBI BLink).",3E-157,"AN2918.2","hypothetical protein",7e-20,"groel","chaperonin",6e-169,"cct4","T-complex protein, delta subunit",6e-156,"CCT4","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",5e-172,"PHYPADRAFT_92982","hypothetical protein"]
["Contig1888",55.61408870577508,30.934739779992565,60.40834384394547,59.29994855094378,2E-180,"AT3G18190","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, delta subunit (InterPro:IPR012717); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 19273 Blast hits to 19203 proteins in 3973 species: Archae - 808; Bacteria - 9512; Metazoa - 2051; Fungi - 1477; Plants - 841; Viruses - 2; Other Eukaryotes - 4582 (source: NCBI BLink).",4E-160,"AN2918.2","hypothetical protein",2e-17,"groel","chaperonin",2E-180,"cct4","T-complex protein, delta subunit",2e-158,"CCT4","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",2E-179,"PHYPADRAFT_218689","hypothetical protein"]
["TRINITY_DN56534_c0_g1_i1@@W-35D-3@@KO",0,0,0.3998875378682201,0,1e-32,"AT3G18190","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, delta subunit (InterPro:IPR012717); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 19273 Blast hits to 19203 proteins in 3973 species: Archae - 808; Bacteria - 9512; Metazoa - 2051; Fungi - 1477; Plants - 841; Viruses - 2; Other Eukaryotes - 4582 (source: NCBI BLink).",1E-27,"AN2918.2","hypothetical protein","","","",1e-34,"cct4","T-complex protein, delta subunit",4e-20,"CCT4","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",7e-32,"PHYPADRAFT_92982","hypothetical protein"]
["Contig6007",0.22387089668897184,0.2038101841554078,7.518360128825483,0,2e-156,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",0,"AN1904.2","hypothetical protein",3e-17,"groel","chaperonin",0,"cct5","T-complex protein, epsilon subunit",1e-158,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_170350","hypothetical protein"]
["Contig304@@KO",25.91671159882322,8.6135546112986,26.71675123843725,30.318382451068235,8e-177,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",0,"AN1904.2","hypothetical protein",2E-19,"groel","chaperonin",0,"cct5","T-complex protein, epsilon subunit",9e-169,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_170350","hypothetical protein"]
["Contig3738@@WT",17.389679046026185,6.218274823499297,19.87497955445236,21.06914804534275,1E-176,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",0,"AN1904.2","hypothetical protein",3e-19,"groel","chaperonin",0,"cct5","T-complex protein, epsilon subunit",1E-168,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_170350","hypothetical protein"]
["TRINITY_DN54637_c0_g1_i1@@W-35D-3@@KO",0,0.16467409127955493,0.3955597506618541,0.18759346422269602,1e-34,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",6e-33,"AN1904.2","hypothetical protein","","","",3E-28,"cct5","T-complex protein, epsilon subunit",3E-23,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",3e-30,"PHYPADRAFT_170350","hypothetical protein"]
["TRINITY_DN49869_c0_g1_i1@@W-35D-3@@KO",0,0,0.5512778425513624,0,5E-52,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",3e-44,"AN1904.2","hypothetical protein","","","",1E-50,"cct5","T-complex protein, epsilon subunit",5e-35,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",2E-51,"PHYPADRAFT_170350","hypothetical protein"]
["TRINITY_DN32061_c0_g1_i1@@W-25D-4@@WT",0,0.3102117438171432,0,0,2e-38,"AT1G24510","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).",3e-42,"AN1904.2","hypothetical protein","","","",3e-38,"cct5","T-complex protein, epsilon subunit",2E-35,"CCT5","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",1E-41,"PHYPADRAFT_170350","hypothetical protein"]
["Contig5613",32.86865147853633,20.47402445726306,26.005388844276297,18.45660169727961,9e-74,"AT4G31790","Tetrapyrrole (Corrin/Porphyrin) Methylases \\\\ Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 1000 Blast hits to 999 proteins in 351 species: Archae - 460; Bacteria - 44; Metazoa - 134; Fungi - 154; Plants - 44; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).",9e-67,"AN0720.2","hypothetical protein","","","",1E-56,"chlredraft_122908","hypothetical protein",7E-72,"DPH5","Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm",5e-77,"PHYPADRAFT_198807","hypothetical protein"]
["TRINITY_DN42500_c0_g1_i1@@W-35D-3@@KO",0.1649674712488109,0,1.4687916629905904,0,6e-86,"AT4G31790","Tetrapyrrole (Corrin/Porphyrin) Methylases \\\\ Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 1000 Blast hits to 999 proteins in 351 species: Archae - 460; Bacteria - 44; Metazoa - 134; Fungi - 154; Plants - 44; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).",1E-83,"AN0720.2","hypothetical protein","","","",9e-54,"chlredraft_122908","hypothetical protein",6e-87,"DPH5","Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm",7e-91,"PHYPADRAFT_198807","hypothetical protein"]
["TRINITY_DN25292_c1_g1_i3@@W-25D-4@@WT",5.199774693762519,3.381308007606861,4.9670133613877745,4.4445220754300285,1e-57,"AT4G31790","Tetrapyrrole (Corrin/Porphyrin) Methylases \\\\ Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 1000 Blast hits to 999 proteins in 351 species: Archae - 460; Bacteria - 44; Metazoa - 134; Fungi - 154; Plants - 44; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).",3E-49,"AN0720.2","hypothetical protein","","","",3E-57,"chlredraft_122908","hypothetical protein",9e-58,"DPH5","Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm",3e-60,"PHYPADRAFT_198807","hypothetical protein"]
["TRINITY_DN16378_c0_g1_i1@@W-35D-3@@KO",0,0,1.0563503167963966,0,1e-32,"AT4G31790","Tetrapyrrole (Corrin/Porphyrin) Methylases \\\\ Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 1000 Blast hits to 999 proteins in 351 species: Archae - 460; Bacteria - 44; Metazoa - 134; Fungi - 154; Plants - 44; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).",7e-28,"AN0720.2","hypothetical protein","","","",8e-34,"chlredraft_122908","hypothetical protein",1e-31,"DPH5","Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm",9e-33,"PHYPADRAFT_198807","hypothetical protein"]
["Contig9391",7.078324856277118,4.251617806448175,5.368219808014931,4.843358822660988,1e-57,"AT4G31790","Tetrapyrrole (Corrin/Porphyrin) Methylases \\\\ Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 1000 Blast hits to 999 proteins in 351 species: Archae - 460; Bacteria - 44; Metazoa - 134; Fungi - 154; Plants - 44; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).",3E-49,"AN0720.2","hypothetical protein","","","",2e-57,"chlredraft_122908","hypothetical protein",8e-58,"DPH5","Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm",3e-60,"PHYPADRAFT_198807","hypothetical protein"]
["Contig1264@@KO",8.922199195203046,6.233696326872984,4.813011938220773,6.225168589289465,1e-20,"ATMAK3","Acyl-CoA N-acyltransferases (NAT) superfamily protein \\\\ Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. \\\\ ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 3613 Blast hits to 3609 proteins in 1331 species: Archae - 279; Bacteria - 1857; Metazoa - 641; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).",2e-21,"AN4993.2","hypothetical protein","","","",3e-20,"chlredraft_117568","hypothetical protein",4e-20,"MAK3","Catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus",1E-22,"PHYPADRAFT_7348","hypothetical protein"]
["Contig8291",8.191321506146993,6.317654908702737,9.783727572642203,6.2486437267989,3E-24,"ATMAK3","Acyl-CoA N-acyltransferases (NAT) superfamily protein \\\\ Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. \\\\ ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 3613 Blast hits to 3609 proteins in 1331 species: Archae - 279; Bacteria - 1857; Metazoa - 641; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).",2e-22,"AN4993.2","hypothetical protein","","","",3e-25,"chlredraft_117568","hypothetical protein",1E-22,"MAK3","Catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus",1e-28,"PHYPADRAFT_7348","hypothetical protein"]
["TRINITY_DN15574_c0_g1_i1@@W-25D-4@@WT",5.78106325601912,7.635879160385139,4.399089222170877,4.738284856425404,5e-11,"ATMAK3","Acyl-CoA N-acyltransferases (NAT) superfamily protein \\\\ Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. \\\\ ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 3613 Blast hits to 3609 proteins in 1331 species: Archae - 279; Bacteria - 1857; Metazoa - 641; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).","","","","","","",3e-13,"chlredraft_117568","hypothetical protein","","","",1E-13,"PHYPADRAFT_7348","hypothetical protein"]
["Contig22119@@KO",0.11051379865404536,0.023519415772827693,10.90361874256585,0.026792852761692732,1E-146,"AT4G38350","Patched family protein \\\\ Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT1G42470.1); Has 3325 Blast hits to 2735 proteins in 472 species: Archae - 80; Bacteria - 454; Metazoa - 1756; Fungi - 181; Plants - 170; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink).",1E-136,"AN2119.2","hypothetical protein","","","",6e-23,"ssd1","sterol sensing 5-transmembrane protein",2E-99,"NCR1","Vacuolar membrane protein that transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; glycoprotein and functional orthologue of human Niemann Pick C1 (NPC1) protein",2e-141,"PHYPADRAFT_113528","hypothetical protein"]
["Contig10134",6.5952398296810015,8.659794728833072,13.514125039461154,16.468820214911325,5e-35,"AT1G42470","Patched family protein \\\\ Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT4G38350.1); Has 2676 Blast hits to 2177 proteins in 377 species: Archae - 64; Bacteria - 237; Metazoa - 1621; Fungi - 207; Plants - 110; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).",8e-39,"AN2119.2","hypothetical protein","","","",1e-19,"ssd1","sterol sensing 5-transmembrane protein","","","",8e-29,"PHYPADRAFT_132440","hypothetical protein"]
["TRINITY_DN17754_c0_g1_i1@@W-35D-3@@KO",0.24435031455650938,0,1.374049660193809,0,7e-28,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",3e-18,"AN2512.2","hypothetical protein",6e-12,"rpoc","DNA-directed RNA polymerase subunit beta'",2e-33,"rpa1","DNA-directed RNA polymerase I subunit A",5e-44,"RPA190","RNA polymerase I largest subunit A190",2E-19,"PHYPADRAFT_101222","hypothetical protein"]
["Contig2554",5.3787655472682525,0.811231754258948,6.883784951538873,8.83959188854651,6e-63,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",3e-38,"AN2512.2","hypothetical protein",2E-14,"rpoc","DNA-directed RNA polymerase subunit beta'",4e-62,"rpa1","DNA-directed RNA polymerase I subunit A",2e-67,"RPA190","RNA polymerase I largest subunit A190",1E-35,"PHYPADRAFT_177840","hypothetical protein"]
["Contig17319@@KO",0,0,3.9814510850931724,0,4E-35,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",1e-19,"AN0809.2","similar to RNA polymerase II largest subunit","","","",1e-40,"rpa1","DNA-directed RNA polymerase I subunit A",1e-40,"RPA190","RNA polymerase I largest subunit A190",3e-20,"PHYPADRAFT_101222","hypothetical protein"]
["Contig14245",3.0739408802157344,0.5635513346011435,4.581731402537989,6.370481641449707,9e-22,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",2e-15,"AN0809.2","similar to RNA polymerase II largest subunit","","","",3E-23,"rpa1","DNA-directed RNA polymerase I subunit A",9e-25,"RPA190","RNA polymerase I largest subunit A190",1E-13,"PHYPADRAFT_177840","hypothetical protein"]
["TRINITY_DN21949_c0_g1_i1@@W-35D-3@@KO",0,0,1.0349840077997057,0.1402397742247339,6e-32,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",3e-19,"AN0809.2","similar to RNA polymerase II largest subunit","","","",2e-26,"rpa1","DNA-directed RNA polymerase I subunit A",3E-32,"RPA190","RNA polymerase I largest subunit A190",9e-19,"PHYPADRAFT_177840","hypothetical protein"]
["TRINITY_DN21949_c1_g1_i1@@W-35D-3@@KO",0,0,0.8902158897984943,0,5e-24,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).","","","","","","",2e-17,"rpa1","DNA-directed RNA polymerase I subunit A",8e-21,"RPA190","RNA polymerase I largest subunit A190","","",""]
["Contig4654",3.112891938315684,0.5344021276390154,5.134698985602919,5.700397566092729,8e-13,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).","","","","","","",5e-13,"rpa1","DNA-directed RNA polymerase I subunit A",2e-15,"RPA190","RNA polymerase I largest subunit A190","","",""]
["Contig6059",158.6446410792172,699.0440509292688,699.2157574083957,1522.1680013425043,3E-124,"PRK","phosphoribulokinase \\\\ phosphoribulokinase (PRK); FUNCTIONS IN: protein binding, phosphoribulokinase activity, ATP binding; INVOLVED IN: response to cold, defense response to bacterium, biosynthetic process, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Phosphoribulokinase (InterPro:IPR006082); BEST Arabidopsis thaliana protein match is: uridine kinase-like 5 (TAIR:AT3G27440.1); Has 6197 Blast hits to 6197 proteins in 2200 species: Archae - 37; Bacteria - 4118; Metazoa - 341; Fungi - 129; Plants - 1120; Viruses - 2; Other Eukaryotes - 450 (source: NCBI BLink).",3e-35,"AN3426.2","hypothetical protein",3e-14,"udk","uridine kinase",2E-121,"prk1","phosphoribulokinase",7e-40,"RRP4","Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2)",2e-126,"PHYPADRAFT_62365","hypothetical protein"]
["Contig15943",7.131352440505023,11.288692878060523,10.956323093763253,16.52763107203408,5e-25,"FRD3","MATE efflux family protein \\\\ Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. \\\\ FERRIC REDUCTASE DEFECTIVE 3 (FRD3); FUNCTIONS IN: antiporter activity, transporter activity; INVOLVED IN: cellular iron ion homeostasis; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G51340.2); Has 16442 Blast hits to 16241 proteins in 2243 species: Archae - 390; Bacteria - 12800; Metazoa - 108; Fungi - 151; Plants - 401; Viruses - 0; Other Eukaryotes - 2592 (source: NCBI BLink).","","","","","","",9e-26,"chlredraft_193269","hypothetical protein","","","",3E-23,"PHYPADRAFT_80731","hypothetical protein"]
["TRINITY_DN17446_c0_g2_i1@@W-35D-5@@WT",7.269578665188707,11.075736625576928,10.688816452703106,16.52638571502035,4e-25,"FRD3","MATE efflux family protein \\\\ Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. \\\\ FERRIC REDUCTASE DEFECTIVE 3 (FRD3); FUNCTIONS IN: antiporter activity, transporter activity; INVOLVED IN: cellular iron ion homeostasis; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G51340.2); Has 16442 Blast hits to 16241 proteins in 2243 species: Archae - 390; Bacteria - 12800; Metazoa - 108; Fungi - 151; Plants - 401; Viruses - 0; Other Eukaryotes - 2592 (source: NCBI BLink).","","","","","","",1E-25,"chlredraft_193269","hypothetical protein","","","",2e-23,"PHYPADRAFT_80731","hypothetical protein"]
["Contig1721",1.9409974139347579,0.42982728910256707,1.1799748494319717,0.9093513689439162,5e-55,"AT1G79950","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink).",1e-23,"AN3444.2","hypothetical protein","","","",5e-40,"chlredraft_173679","ATP-dependent DNA helicase",3e-22,"RAD3","5' to 3' DNA helicase; involved in nucleotide excision repair and transcription; subunit of RNA polII initiation factor TFIIH and of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein; mutant has aneuploidy tolerance; protein abundance increases in response to DNA replication stress",1E-52,"PHYPADRAFT_112245","hypothetical protein"]
["TRINITY_DN49242_c0_g1_i1@@W-35D-3@@KO",0,0,1.4221681307842537,0,8e-31,"AT1G20720","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).",3e-21,"AN3444.2","hypothetical protein","","","",2E-35,"chlredraft_173679","ATP-dependent DNA helicase",2E-19,"CHL1","Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome",3e-26,"PHYPADRAFT_81444","hypothetical protein"]
["TRINITY_DN755_c0_g1_i1@@W-35D-3@@KO",0,0,0.9825193806762184,0,4e-77,"AT1G79950","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink).",3E-34,"AN3444.2","hypothetical protein","","","",2e-54,"chlredraft_173679","ATP-dependent DNA helicase",2e-25,"RAD3","5' to 3' DNA helicase; involved in nucleotide excision repair and transcription; subunit of RNA polII initiation factor TFIIH and of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein; mutant has aneuploidy tolerance; protein abundance increases in response to DNA replication stress",2e-83,"PHYPADRAFT_112245","hypothetical protein"]
["TRINITY_DN12769_c0_g1_i1@@W-35D-3@@KO",0,0,1.4969955025047863,0,3e-18,"AT1G20720","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).",6e-12,"AN3444.2","hypothetical protein","","","",5e-16,"chlredraft_173679","ATP-dependent DNA helicase","","","",2e-21,"PHYPADRAFT_81444","hypothetical protein"]
["Contig16896",1.8297351769477836,0.9735051845317259,0.4676867685368563,0.11089978307215043,4e-23,"AT1G20720","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).","","","","","","",2e-24,"chlredraft_173679","ATP-dependent DNA helicase",5e-12,"CHL1","Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome",4e-25,"PHYPADRAFT_81444","hypothetical protein"]
["TRINITY_DN15218_c0_g1_i1@@W-25D-2@@KO",1.1731020177693219,0.08582000019306754,0.30921929747170324,0,1E-35,"AT1G20750","RAD3-like DNA-binding helicase protein \\\\ RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink).","","","","","","",4e-30,"chlredraft_173679","ATP-dependent DNA helicase","","","",7e-31,"PHYPADRAFT_81444","hypothetical protein"]
["TRINITY_DN51263_c0_g1_i1@@W-35D-3@@KO",0.7737759960956131,0,1.8129821905334982,0,7e-27,"AT4G14342","Splicing factor 3B subunit 5/RDS3 complex subunit 10 \\\\ Splicing factor 3B subunit 5/RDS3 complex subunit 10; CONTAINS InterPro DOMAIN/s: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (InterPro:IPR009846), Splicing factor 3B, subunit 5 (InterPro:IPR017089); BEST Arabidopsis thaliana protein match is: Splicing factor 3B subunit 5/RDS3 complex subunit 10 (TAIR:AT3G23325.1); Has 333 Blast hits to 333 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 97; Plants - 62; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).",5e-14,"AN4090.2","hypothetical protein","","","",5e-31,"chlredraft_137182","hypothetical protein","","","",1E-26,"PHYPADRAFT_194407","hypothetical protein"]
["TRINITY_DN36371_c2_g2_i1@@W-35D-3@@KO",2.2988477593476397,1.4308271779557455,1.5132866924267818,1.6786258112255728,2e-26,"ARP","apurinic endonuclease-redox protein \\\\ apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. \\\\ apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).","","","",5e-22,"exoaa","exodeoxyribonuclease",3E-32,"chlredraft_143864","hypothetical protein","","","",9e-26,"PHYPADRAFT_136114","hypothetical protein"]
["TRINITY_DN29692_c2_g2_i3@@W-25D-2@@KO",2.234137429059433,1.0755511957668393,1.2664490977531297,1.3934177317564413,2e-26,"ARP","apurinic endonuclease-redox protein \\\\ apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. \\\\ apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).","","","",5e-22,"exoaa","exodeoxyribonuclease",3E-32,"chlredraft_143864","hypothetical protein","","","",9e-26,"PHYPADRAFT_136114","hypothetical protein"]
["TRINITY_DN21570_c1_g1_i2@@W-35D-5@@WT",2.0468124841443753,1.2233878218477086,1.4999466726102266,1.103313520232379,2e-22,"ARP","apurinic endonuclease-redox protein \\\\ apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. \\\\ apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).","","","",1e-19,"exoaa","exodeoxyribonuclease",3E-28,"chlredraft_143864","hypothetical protein","","","",1e-21,"PHYPADRAFT_136114","hypothetical protein"]
["TRINITY_DN42473_c0_g1_i1@@W-35D-3@@KO",0,0,1.4418035882112552,0,6e-12,"ARP","apurinic endonuclease-redox protein \\\\ apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. \\\\ apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).","","","",7e-19,"exoaa","exodeoxyribonuclease",9e-12,"chlredraft_143864","hypothetical protein","","","",1e-12,"PHYPADRAFT_136114","hypothetical protein"]
["Contig15702",2.993809672166299,3.7222332777953215,2.7185742863669247,2.1392476501904536,3e-26,"ARP","apurinic endonuclease-redox protein \\\\ apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. \\\\ apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).","","","",6e-22,"exoaa","exodeoxyribonuclease",3E-32,"chlredraft_143864","hypothetical protein","","","",1E-25,"PHYPADRAFT_136114","hypothetical protein"]
["Contig16379@@KO",10.119048450785433,6.2296634088486975,6.968273983984102,5.543352256440405,"","","","","","","","","",2e-17,"chlredraft_206200","TPR-repeat protein","","","",2e-33,"PHYPADRAFT_229479","hypothetical protein"]
["Contig3947@@KO",9.500010305481734,5.598418827784525,7.340787838611786,4.85634361457114,"","","","","","","","","",2e-13,"chlredraft_206200","TPR-repeat protein","","","",8e-27,"PHYPADRAFT_229479","hypothetical protein"]
["Contig15121",5.825264935322757,6.161561711047786,4.298686848193048,6.915906614916579,"","","","","","","","","",3e-17,"chlredraft_206200","TPR-repeat protein","","","",2e-33,"PHYPADRAFT_229479","hypothetical protein"]
["Contig15319",2.0786307201387686,1.1229436187624262,1.273770513201395,1.9188527041524477,1e-20,"AT5G21060","Glyceraldehyde-3-phosphate dehydrogenase-like family protein \\\\ Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).",6e-17,"AN2882.2","hypothetical protein","","","",5e-16,"hsd1","homoserine dehydrogenase",5e-16,"HOM6","Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions",7e-15,"PHYPADRAFT_142581","hypothetical protein"]
["TRINITY_DN29412_c0_g1_i2@@W-35D-3@@KO",0.2615580831872495,0.5102577476267899,0.6128390503211825,1.1625510458871302,4e-21,"AT5G21060","Glyceraldehyde-3-phosphate dehydrogenase-like family protein \\\\ Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).",2E-16,"AN2882.2","hypothetical protein","","","",2e-15,"hsd1","homoserine dehydrogenase",1e-15,"HOM6","Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions",5E-15,"PHYPADRAFT_131281","hypothetical protein"]
["Contig14760@@KO",0.17229207070121005,0,5.207548049468784,0,5e-33,"CYTC-2","cytochrome c-2 \\\\ Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. \\\\ cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).",1e-31,"AN6246.2","hypothetical protein","","","",2e-33,"cyc","mitochondrial cytochrome c",2e-31,"CYC1","Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; CYC1 has a paralog, CYC7, that arose from the whole genome duplication",4e-34,"PHYPADRAFT_215021","hypothetical protein"]
["Contig11390",22.758117532223913,15.317112166811542,88.01495304984094,115.49688195804987,1e-33,"CYTC-2","cytochrome c-2 \\\\ Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. \\\\ cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).",2e-31,"AN2000.2","similar to UBI4 locus contains five-six tandem, in-frame copies of ubiquitin protein coding sequence (depending on strain background)(PMID:6095120, 3038523)transcription of UBI4 is induced in response to several stress conditions; Ubi4p [Saccharomyces cerevisi","","","",3E-32,"cyc","mitochondrial cytochrome c",4e-31,"RPL40A","Ubiquitin-ribosomal 60S subunit protein L40B fusion protein; cleaved to yield ubiquitin and ribosomal protein L40B; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40B has a paralog, RPL40A, that arose from the whole genome duplication",2e-32,"PHYPADRAFT_215021","hypothetical protein"]
["Contig15324",29.077361817870553,21.753532099195482,100.64567175006887,133.17828912259438,9e-34,"CYTC-2","cytochrome c-2 \\\\ Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. \\\\ cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).",2e-31,"AN2000.2","similar to UBI4 locus contains five-six tandem, in-frame copies of ubiquitin protein coding sequence (depending on strain background)(PMID:6095120, 3038523)transcription of UBI4 is induced in response to several stress conditions; Ubi4p [Saccharomyces cerevisi","","","",2e-32,"cyc","mitochondrial cytochrome c",4e-31,"RPL40A","Ubiquitin-ribosomal 60S subunit protein L40B fusion protein; cleaved to yield ubiquitin and ribosomal protein L40B; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40B has a paralog, RPL40A, that arose from the whole genome duplication",2e-32,"PHYPADRAFT_215021","hypothetical protein"]
["Contig14491",131.88824957177252,60.98688465248195,112.2035195461034,111.608185958564,0,"AT5G20890","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink).",1e-178,"AN0381.2","hypothetical protein",2e-18,"groel","chaperonin",0,"cct2","T-complex protein 1, beta subunit",2E-175,"CCT2","Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_197847","hypothetical protein"]
["Contig19665@@KO",0.7369295200910599,0.05750523822460648,12.604542848470986,0,0,"AT5G20890","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink).",0,"AN0381.2","hypothetical protein",3e-18,"groel","chaperonin",0,"cct2","T-complex protein 1, beta subunit",3e-167,"CCT2","Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_215543","hypothetical protein"]
["Contig2712@@KO",45.686652752635254,22.39567641401947,38.55975050896296,35.01744665490325,4E-176,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-179,"AN3134.2","hypothetical protein",2E-12,"groel","chaperonin",0,"cct3","T-complex protein 1, gamma subunit",1E-166,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",4e-179,"PHYPADRAFT_217424","hypothetical protein"]
["Contig20917@@KO",0.5580198672850781,0.028398443512935564,10.641576091713755,0.12940377823200533,0,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",0,"AN3134.2","hypothetical protein",2e-17,"groel","chaperonin",0,"cct3","T-complex protein 1, gamma subunit",0,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",0,"PHYPADRAFT_217424","hypothetical protein"]
["Contig14759@@WT",29.303492184445552,21.012414047271207,23.161544784907953,29.51162658085539,8E-176,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",7e-179,"AN3134.2","hypothetical protein",4e-12,"groel","chaperonin",0,"cct3","T-complex protein 1, gamma subunit",3e-166,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",9e-179,"PHYPADRAFT_217424","hypothetical protein"]
["Contig15271@@WT",13.228666295402975,3.9360600088548754,8.716510786199553,13.330458893214745,2E-90,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8e-89,"AN3134.2","hypothetical protein","","","",4e-93,"cct3","T-complex protein 1, gamma subunit",2e-82,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",1E-87,"PHYPADRAFT_217424","hypothetical protein"]
["Contig6852@@KO",8.362859954386062,1.0828270733156045,2.8264562656173817,9.473550042931983,8e-17,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8e-15,"AN3134.2","hypothetical protein","","","",8e-15,"cct3","T-complex protein 1, gamma subunit",2E-12,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",3e-13,"PHYPADRAFT_217424","hypothetical protein"]
["TRINITY_DN34361_c0_g1_i1@@W-25D-4@@WT",0,0.30926597630550556,0,0.17615483835545845,1e-34,"AT5G26360","TCP-1/cpn60 chaperonin family protein \\\\ TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-34,"AN3134.2","hypothetical protein","","","",3E-34,"cct3","T-complex protein 1, gamma subunit",2e-33,"CCT3","Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo",3e-33,"PHYPADRAFT_217424","hypothetical protein"]
["Contig11747",51.23838667467675,25.1332868706635,48.16810666864295,57.21353300332385,0,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",2e-154,"AN2149.2","hypothetical protein",4e-15,"groel","chaperonin",0,"cct1","T-complex protein 1, alpha subunit",4e-155,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",0,"PHYPADRAFT_106753","hypothetical protein"]
["Contig20674@@KO",0.7276272250487988,0.05873725548824889,7.372024397685256,0,0,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",5e-174,"AN2149.2","hypothetical protein",5E-15,"groel","chaperonin",0,"cct1","T-complex protein 1, alpha subunit",3E-176,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",0,"PHYPADRAFT_106753","hypothetical protein"]
["TRINITY_DN16221_c1_g1_i1@@W-25D-4@@WT",1.3611975638121778,0.26554774928849695,1.4883539658411127,0.6050134762365484,2e-48,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",7e-42,"AN2149.2","hypothetical protein","","","",2e-48,"cct1","T-complex protein 1, alpha subunit",1E-41,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",2e-53,"PHYPADRAFT_220842","hypothetical protein"]
["Contig8946@@WT",2.6309645115818237,1.033407092789383,1.7128027345284687,1.200781636515937,5e-122,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",4e-102,"AN2149.2","hypothetical protein","","","",5e-122,"cct1","T-complex protein 1, alpha subunit",2E-100,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",9e-127,"PHYPADRAFT_207472","hypothetical protein"]
["Contig9297@@KO",2.4749782864852095,0.7016100952865642,1.8212340505707323,1.5469554747146017,4e-122,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",2e-139,"AN2149.2","hypothetical protein","","","",4e-122,"cct1","T-complex protein 1, alpha subunit",1E-136,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",1E-169,"PHYPADRAFT_207472","hypothetical protein"]
["Contig8830@@KO",0.6790433814903715,0.3477349077362589,0.4773061829729719,0.33954233289279356,5e-69,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",4e-58,"AN2149.2","hypothetical protein","","","",9E-68,"cct1","T-complex protein 1, alpha subunit",9e-58,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",5e-70,"PHYPADRAFT_207472","hypothetical protein"]
["Contig18804@@KO",1.485649912503577,0.4968452582606,0.7459126726766392,0.7074953507827393,3e-41,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",9e-37,"AN2149.2","hypothetical protein","","","",2E-41,"cct1","T-complex protein 1, alpha subunit",6e-35,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",4E-41,"PHYPADRAFT_207472","hypothetical protein"]
["Contig18805@@KO",1.7788702899713882,0.42711259043455085,1.5389356194170662,0.97311641230468,1e-75,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).",2E-66,"AN2149.2","hypothetical protein","","","",1e-75,"cct1","T-complex protein 1, alpha subunit",6e-66,"Z68195","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YDR210W.",3e-80,"PHYPADRAFT_207472","hypothetical protein"]
["Contig17048",22.785682861672544,21.646670720437783,9.494679546455988,14.607678104381744,2e-13,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).","","","","","","",7e-13,"cct1","T-complex protein 1, alpha subunit","","","",2E-14,"PHYPADRAFT_106753","hypothetical protein"]
["Contig4696@@KO",21.844103104469948,20.911002339633313,9.04291175141947,14.527028772194033,2e-13,"TCP-1","T-complex protein 1 alpha subunit \\\\ Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). \\\\ T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink).","","","","","","",8e-13,"cct1","T-complex protein 1, alpha subunit","","","",2E-14,"PHYPADRAFT_106753","hypothetical protein"]
["Contig14056@@KO",0.5600188146217038,0,2.460266623664198,0,1E-10,"AT5G51880","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \\\\ 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1E-27,"AN1676.2","hypothetical protein","","","",1e-16,"chlredraft_113197","hypothetical protein","","","",3e-15,"PHYPADRAFT_148314","hypothetical protein"]
["TRINITY_DN31093_c0_g1_i1@@W-35D-3@@KO",0.11463348090305378,0,1.98756566073302,0,"","","","","","","","","",3e-50,"chlredraft_113197","hypothetical protein","","","","","",""]
["Contig7@@KO",4.832808867863715,2.492835771203546,3.6849120061656278,3.7135704297543906,9e-15,"AT3G58180","ARM repeat superfamily protein \\\\ ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).",3e-13,"AN7498.2","hypothetical protein","","","",3e-12,"doh1","deoxyhypusine hydroxylase",4e-13,"LIA1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",4e-12,"PHYPADRAFT_130097","hypothetical protein"]
["Contig19837@@KO",0.11823043869400908,0.06919457041487437,1.8283171012856232,0,3e-54,"AT3G58180","ARM repeat superfamily protein \\\\ ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).",3e-47,"AN7498.2","hypothetical protein","","","",2e-56,"doh1","deoxyhypusine hydroxylase",8e-49,"LIA1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",3e-50,"PHYPADRAFT_130097","hypothetical protein"]
["Contig9630@@KO",1.4158171278516463,0.392499209825388,0.7332990734539617,0.7452122138511226,3e-12,"AT3G58180","ARM repeat superfamily protein \\\\ ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).","","","","","","",9e-12,"doh1","deoxyhypusine hydroxylase",5e-14,"LIA1","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data","","",""]
["Contig5043",11.658262619992524,6.786037397694411,7.595093309463556,11.79588797270529,4e-101,"GATB","GLU-ADT subunit B \\\\ Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). \\\\ GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).",5e-58,"AN2900.2","GATB_EMENI Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial precursor (GLU-ADT subunit B) (NEMPA protein)",9e-108,"gatb","aspartyl/glutamyl-tRNA amidotransferase subunit B",2e-60,"chlredraft_117553","hypothetical protein",3e-46,"PET112","Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog",2e-128,"PHYPADRAFT_226103","hypothetical protein"]
["TRINITY_DN31920_c0_g1_i2@@W-35D-3@@KO",6.6689300245422825,4.155435951155446,4.757620645785915,5.79557511061052,2E-66,"GATB","GLU-ADT subunit B \\\\ Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). \\\\ GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).",9e-35,"AN2900.2","GATB_EMENI Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial precursor (GLU-ADT subunit B) (NEMPA protein)",3e-53,"gatb","aspartyl/glutamyl-tRNA amidotransferase subunit B",1e-43,"chlredraft_117553","hypothetical protein",5e-32,"PET112","Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog",2e-63,"PHYPADRAFT_226103","hypothetical protein"]
["TRINITY_DN5589_c0_g1_i1@@W-35D-5@@WT",14.23549428714365,10.932354014978914,8.444313202831024,13.935428590671236,7e-33,"GATB","GLU-ADT subunit B \\\\ Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). \\\\ GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).",1e-19,"AN2900.2","GATB_EMENI Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial precursor (GLU-ADT subunit B) (NEMPA protein)",7e-53,"gatb","aspartyl/glutamyl-tRNA amidotransferase subunit B",3e-15,"chlredraft_117553","hypothetical protein",3e-12,"PET112","Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog",4e-62,"PHYPADRAFT_226103","hypothetical protein"]
["TRINITY_DN27083_c0_g1_i1@@W-35D-3@@KO",0.3510650352656022,0,1.9741361630253647,0,1E-79,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",9e-85,"AN3933.2","hypothetical protein",2e-31,"rpob","DNA-directed RNA polymerase subunit beta",2E-79,"chlredraft_113199","hypothetical protein",2E-92,"RPA135","RNA polymerase I second largest subunit A135",5E-80,"PHYPADRAFT_191908","hypothetical protein"]
["Contig17041@@KO",1.8592758142178256,0.3022623367944155,1.5973259061291558,3.925376469479918,4e-57,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",3e-67,"AN3933.2","hypothetical protein",4e-29,"rpob","DNA-directed RNA polymerase subunit beta",6e-62,"chlredraft_113199","hypothetical protein",2e-67,"RPA135","RNA polymerase I second largest subunit A135",9E-61,"PHYPADRAFT_191908","hypothetical protein"]
["Contig13309@@WT",2.8689158730940405,0.28511966335223377,2.1687841919486295,4.944218498651393,1e-90,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",3e-109,"AN3933.2","hypothetical protein",2e-30,"rpob","DNA-directed RNA polymerase subunit beta",5e-87,"chlredraft_113199","hypothetical protein",2E-107,"RPA135","RNA polymerase I second largest subunit A135",3e-101,"PHYPADRAFT_191908","hypothetical protein"]
["TRINITY_DN27083_c1_g1_i1@@W-35D-3@@KO",0,0,0.7251928762133992,0,8e-25,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",3e-30,"AN3933.2","hypothetical protein","","","",2e-27,"chlredraft_113199","hypothetical protein",8e-29,"RPA135","RNA polymerase I second largest subunit A135",7e-28,"PHYPADRAFT_191908","hypothetical protein"]
["Contig5881",1.9587725687326052,0.47848698220851804,3.1846913573333713,4.474222105022132,3e-70,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",9e-80,"AN3933.2","hypothetical protein","","","",3e-38,"chlredraft_113199","hypothetical protein",6e-83,"RPA135","RNA polymerase I second largest subunit A135",5e-49,"PHYPADRAFT_191908","hypothetical protein"]
["TRINITY_DN18360_c1_g1_i1@@W-35D-3@@KO",0,0,1.3016282393573833,0,3E-34,"NRPA2","nuclear RNA polymerase A2 \\\\ Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). \\\\ nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).",9e-43,"AN3933.2","hypothetical protein","","","",1e-38,"chlredraft_113199","hypothetical protein",2e-44,"RPA135","RNA polymerase I second largest subunit A135",1e-37,"PHYPADRAFT_191908","hypothetical protein"]
["Contig6509",109.79437090249928,5.565029381479172,166.85290467201662,4.2373300287073095,4e-29,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",1e-23,"AN0067.2","similar to ribonucleotide reductase","","","",5e-26,"rir2b","ribonucleoside-diphosphate reductase small subunit",2e-22,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",2e-29,"PHYPADRAFT_133479","hypothetical protein"]
["TRINITY_DN18829_c0_g1_i1@@W-35D-5@@WT",150.65314236425888,7.490078832442484,227.08865859548402,4.071368797732755,3e-29,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",7e-24,"AN0067.2","similar to ribonucleotide reductase","","","",3e-26,"rir2b","ribonucleoside-diphosphate reductase small subunit",2e-22,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",1e-29,"PHYPADRAFT_133479","hypothetical protein"]
["Contig9497",79.02163239927069,4.517244399189786,117.81761969962727,2.4700585812863713,4e-124,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",5e-109,"AN0067.2","similar to ribonucleotide reductase","","","",6e-122,"rir2a","ribonucleoside-diphosphate reductase small chain",8e-105,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",2e-126,"PHYPADRAFT_133479","hypothetical protein"]
["Contig16804@@WT",8.765052309048881,0.38533424588112375,7.809769436144299,0.9328009294112406,1E-108,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",5e-93,"AN0067.2","similar to ribonucleotide reductase","","","",6E-102,"rir2a","ribonucleoside-diphosphate reductase small chain",1e-88,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",5E-108,"PHYPADRAFT_133479","hypothetical protein"]
["TRINITY_DN23624_c0_g2_i1@@W-25D-4@@WT",124.71413192002947,5.559210457380719,184.98730467122456,3.8370180909096123,2e-47,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",8e-38,"AN0067.2","similar to ribonucleotide reductase","","","",7e-42,"rir2a","ribonucleoside-diphosphate reductase small chain",8e-38,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",3e-45,"PHYPADRAFT_122657","hypothetical protein"]
["Contig19934@@KO",78.60731160335631,6.717116828142525,113.22561692935807,3.3963451270460348,6E-124,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",9e-108,"AN0067.2","similar to ribonucleotide reductase","","","",2E-120,"rir2a","ribonucleoside-diphosphate reductase small chain",2e-103,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",5e-124,"PHYPADRAFT_133479","hypothetical protein"]
["Contig4669@@KO",9.677889480578218,0.7458767663838665,11.113847442998363,1.0886628061600208,9e-127,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",8e-111,"AN0067.2","similar to ribonucleotide reductase","","","",4e-123,"rir2a","ribonucleoside-diphosphate reductase small chain",4e-105,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",4e-129,"PHYPADRAFT_133479","hypothetical protein"]
["Contig2477@@WT",82.42984999830524,8.219612801528227,118.28030360267859,3.8067053898609333,5e-124,"TSO2","Ferritin/ribonucleotide reductase-like family protein \\\\ Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP  biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. \\\\ TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink).",8e-108,"AN0067.2","similar to ribonucleotide reductase","","","",2E-120,"rir2a","ribonucleoside-diphosphate reductase small chain",2e-103,"Z49301","Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits",5e-124,"PHYPADRAFT_133479","hypothetical protein"]
["Contig16089@@KO",0.06477048696764473,0,4.143030153793141,0.043182949910755136,2e-49,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-44,"AN2067.2","hypothetical protein",6e-19,"prkc","serine/threonine protein kinase",4e-48,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-44,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",2E-46,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN34715_c0_g1_i1@@W-35D-3@@KO",0.04772186760061049,0,1.8784731771518888,0,2e-30,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",8e-29,"AN2067.2","hypothetical protein",6e-13,"prkc","serine/threonine protein kinase",1e-28,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-30,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-28,"PHYPADRAFT_119967","hypothetical protein"]
["Contig5509",0.4816836214694321,0.09396872647355797,9.818822675993555,0.026761828152195636,7e-55,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2E-73,"AN2067.2","hypothetical protein",2e-21,"prkc","serine/threonine protein kinase",2e-49,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-74,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4e-53,"PHYPADRAFT_119967","hypothetical protein"]
["Contig18519@@KO",0.1523456506627224,0,5.415453381989362,0.02901998341566568,3e-48,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-69,"AN2067.2","hypothetical protein",3e-18,"prkc","serine/threonine protein kinase",6e-41,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-72,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",3e-44,"PHYPADRAFT_119967","hypothetical protein"]
["Contig13447@@KO",0.24620145330314958,0.03201996219324679,6.037780083019134,0,1e-67,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",7E-72,"AN2067.2","hypothetical protein",3e-20,"prkc","serine/threonine protein kinase",6e-59,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-69,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",6e-63,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN20658_c0_g2_i1@@W-25D-2@@KO",0.20907819436117892,0,1.2491862813422607,0,2e-40,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1E-56,"AN2067.2","hypothetical protein",2e-15,"prkc","serine/threonine protein kinase",2e-36,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",6E-51,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-38,"PHYPADRAFT_119967","hypothetical protein"]
["Contig21105@@KO",0.8685240772501779,0.01848382657219494,5.594345045074794,0.021056409249486287,2E-45,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-53,"AN2067.2","hypothetical protein",3e-16,"prkc","serine/threonine protein kinase",1e-39,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",6e-50,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",7e-43,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN35861_c2_g1_i2@@W-35D-3@@KO",0.4309205547317005,0,6.394518400202128,0.03192198175723225,4e-46,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-63,"AN2067.2","hypothetical protein",1e-21,"prkc","serine/threonine protein kinase",2e-44,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3E-65,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",7e-44,"PHYPADRAFT_119967","hypothetical protein"]
["Contig20075@@KO",0.05347361881697367,0,6.114172435569655,0.04753499545914469,4e-40,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",5e-45,"AN2067.2","hypothetical protein",2E-19,"prkc","serine/threonine protein kinase",3e-38,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4e-46,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",8e-40,"PHYPADRAFT_119967","hypothetical protein"]
["Contig9196@@KO",0.12415889908697515,0,5.018168470072662,0.12416644766602515,3e-40,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",6e-45,"AN2067.2","hypothetical protein",2E-19,"prkc","serine/threonine protein kinase",1E-35,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5E-42,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",1e-37,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN41113_c0_g1_i1@@W-35D-3@@KO",0.07458081890078198,0,1.2581659539124035,0,5e-59,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-38,"AN2067.2","hypothetical protein",5e-18,"prkc","serine/threonine protein kinase",4E-50,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4e-36,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",2e-56,"PHYPADRAFT_119967","hypothetical protein"]
["Contig4857@@KO",1.3362122928170936,0.22343444984186306,1.6101198661301903,0.25453210123608094,5e-26,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-29,"AN2067.2","hypothetical protein",2e-11,"prkc","serine/threonine protein kinase",1e-24,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-27,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4e-26,"PHYPADRAFT_182701","hypothetical protein"]
["Contig11160@@KO",0.11011805789416602,0,3.5992418989701878,0,5e-57,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2E-70,"AN2067.2","hypothetical protein",1e-20,"prkc","serine/threonine protein kinase",7e-49,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1E-73,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4E-55,"PHYPADRAFT_182701","hypothetical protein"]
["Contig6430",5.958075169936221,2.487212140210816,7.55595192946961,7.1112353206880465,1E-52,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1E-59,"AN2067.2","hypothetical protein",1e-19,"prkc","serine/threonine protein kinase",2e-47,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5E-56,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2E-51,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN37452_c2_g1_i2@@W-35D-3@@KO",0.2976061523444665,0,4.769537762788126,0.03968323281633954,6E-52,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-64,"AN2067.2","hypothetical protein",8e-19,"prkc","serine/threonine protein kinase",7e-43,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",8e-64,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",7e-49,"PHYPADRAFT_119967","hypothetical protein"]
["Contig11255@@KO",0.10030429579017207,0.03913550934730163,2.7496896556424724,0,7e-41,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",6E-52,"AN2067.2","hypothetical protein",4e-17,"prkc","serine/threonine protein kinase",1e-39,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-50,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",6e-41,"PHYPADRAFT_119967","hypothetical protein"]
["Contig23947@@KO",0.23380281896414204,0.09122233833471748,3.7981324739809685,0.03463956053992229,4e-63,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-74,"AN2067.2","hypothetical protein",3e-18,"prkc","serine/threonine protein kinase",1e-55,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4e-74,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-60,"PHYPADRAFT_119967","hypothetical protein"]
["Contig16702@@KO",0.14375364477226554,0.02403773465123361,2.6849321085208886,0,7e-52,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",8e-47,"AN2067.2","hypothetical protein",3e-19,"prkc","serine/threonine protein kinase",3E-49,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-45,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",5E-52,"PHYPADRAFT_119967","hypothetical protein"]
["Contig7033",1.6048687326427529,0.1445003422054214,4.801561949629458,1.0425422152243276,5e-37,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3E-43,"AN2067.2","hypothetical protein",4e-12,"prkc","serine/threonine protein kinase",2e-37,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",6e-46,"SKM1","Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; involved in down-regulation of sterol uptake; proposed to be a downstream effector of Cdc42p during polarized growth",3e-35,"PHYPADRAFT_119967","hypothetical protein"]
["Contig22780@@KO",0.17543099506621188,0,3.6993644697525627,0,3e-56,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-61,"AN2067.2","hypothetical protein",9e-20,"prkc","serine/threonine protein kinase",4e-48,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",8e-62,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2E-55,"PHYPADRAFT_119967","hypothetical protein"]
["Contig23946@@KO",0.4007533482668608,0,6.549371964137659,0,4e-57,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",7e-66,"AN2067.2","hypothetical protein",2e-17,"prkc","serine/threonine protein kinase",3e-54,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-64,"CLA4","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family, along with Ste20p and Skm1p; involved in septin ring assembly, vacuole inheritance, cytokinesis, sterol uptake regulation; phosphorylates Cdc3p and Cdc10p",2E-55,"PHYPADRAFT_119967","hypothetical protein"]
["Contig16440@@KO",1.3977888961727203,0.06817153241142865,31.931879871977095,0.23297897976044504,7e-67,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-71,"AN2067.2","hypothetical protein",3e-20,"prkc","serine/threonine protein kinase",2e-59,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-70,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",1e-64,"PHYPADRAFT_119967","hypothetical protein"]
["Contig7958",1.7403617485953788,0.20786729554960212,23.41778569778941,0.04735966145950031,7e-49,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-71,"AN2067.2","hypothetical protein",2e-21,"prkc","serine/threonine protein kinase",3e-44,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",6e-75,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",3e-47,"PHYPADRAFT_119967","hypothetical protein"]
["Contig16520@@KO",0.052332676064437596,0,1.9128275865338937,0,2E-46,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-48,"AN2067.2","hypothetical protein",1e-21,"prkc","serine/threonine protein kinase",5e-37,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-48,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-43,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN39429_c1_g1_i3@@W-35D-3@@KO",0.08908605218206071,0,2.755255829034461,0,7e-41,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2E-52,"AN2067.2","hypothetical protein",4e-17,"prkc","serine/threonine protein kinase",1e-39,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-50,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",6e-41,"PHYPADRAFT_119967","hypothetical protein"]
["Contig11271@@KO",0.15257554852589553,0.02232377645867206,8.418876453787245,0,4e-34,"MAP3KA","mitogen-activated protein kinase kinase kinase 3 \\\\ MEK kinase (MAP3Ka) \\\\ mitogen-activated protein kinase kinase kinase 3 (MAP3KA); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G63700.1); Has 133768 Blast hits to 131661 proteins in 5018 species: Archae - 142; Bacteria - 15067; Metazoa - 50668; Fungi - 13071; Plants - 32592; Viruses - 564; Other Eukaryotes - 21664 (source: NCBI BLink).",1e-34,"AN2067.2","hypothetical protein",2E-16,"prkc","serine/threonine protein kinase",3e-30,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-36,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-32,"PHYPADRAFT_119967","hypothetical protein"]
["Contig24854@@KO",0.31275985144022156,0,2.198419349150856,0,1e-60,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",6e-62,"AN2067.2","hypothetical protein",9e-27,"prkc","serine/threonine protein kinase",1E-52,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-62,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-59,"PHYPADRAFT_119967","hypothetical protein"]
["Contig13797@@KO",0.06949712234379203,0,1.0258542370813444,0,8e-23,"MAPKKK7","mitogen-activated protein kinase kinase kinase 7 \\\\ MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required  for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following  pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules. \\\\ mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink).",1e-31,"AN2067.2","hypothetical protein",4e-16,"prkc","serine/threonine protein kinase",7e-23,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-35,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-24,"PHYPADRAFT_127611","hypothetical protein"]
["Contig11367@@KO",0.641487645282705,0.04844280813190346,10.647244406067214,0.05518508785156674,5e-55,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1E-73,"AN2067.2","hypothetical protein",2e-21,"prkc","serine/threonine protein kinase",1e-49,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-74,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4e-53,"PHYPADRAFT_119967","hypothetical protein"]
["Contig13924@@KO",0.10949199186697241,0.03204018958566198,4.540816038551619,0,4e-59,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1E-61,"AN2067.2","hypothetical protein",7e-17,"prkc","serine/threonine protein kinase",3e-53,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",8e-62,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",7e-58,"PHYPADRAFT_119967","hypothetical protein"]
["Contig4491",0.43606867576574804,0.02686420556891044,14.874136090300674,0.15301585535113976,2E-46,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-64,"AN2067.2","hypothetical protein",1e-21,"prkc","serine/threonine protein kinase",8e-45,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-66,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",9e-44,"PHYPADRAFT_119967","hypothetical protein"]
["Contig22538@@KO",0.39733377690493016,0,16.850482664210684,0.02943392102933794,8e-69,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3E-79,"AN2067.2","hypothetical protein",2E-19,"prkc","serine/threonine protein kinase",5e-58,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-77,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-64,"PHYPADRAFT_119967","hypothetical protein"]
["Contig24933@@KO",0.12171757241953463,0,6.2456217934558484,0,1e-38,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-54,"AN2067.2","hypothetical protein",1e-12,"prkc","serine/threonine protein kinase",2e-32,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-46,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",3e-36,"PHYPADRAFT_119967","hypothetical protein"]
["Contig4829",7.790699289249067,2.461333991217405,7.850775385451024,3.2635591691502914,3e-46,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",6e-55,"AN2067.2","hypothetical protein",1E-13,"prkc","serine/threonine protein kinase",5e-45,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-56,"CLA4","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family, along with Ste20p and Skm1p; involved in septin ring assembly, vacuole inheritance, cytokinesis, sterol uptake regulation; phosphorylates Cdc3p and Cdc10p",2e-44,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN37152_c1_g1_i2@@W-35D-3@@KO",0.06610443292350011,0.03868773464081077,0.7899126065848469,0,9e-23,"MAPKKK7","mitogen-activated protein kinase kinase kinase 7 \\\\ MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required  for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following  pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules. \\\\ mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink).",1e-31,"AN2067.2","hypothetical protein",4e-16,"prkc","serine/threonine protein kinase",7e-23,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-35,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",2e-24,"PHYPADRAFT_127611","hypothetical protein"]
["Contig10864@@KO",0.20165889834254486,0,6.520407850351542,0,5e-62,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-62,"AN2067.2","hypothetical protein",7e-17,"prkc","serine/threonine protein kinase",1E-50,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",9E-61,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",1e-57,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN37152_c1_g1_i4@@W-35D-3@@KO",0.09915664938525019,0.03868773464081077,0.6040508168001769,0,2e-22,"MAPKKK7","mitogen-activated protein kinase kinase kinase 7 \\\\ MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required  for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following  pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules. \\\\ mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink).",2e-30,"AN8836.2","hypothetical protein",4e-16,"prkc","serine/threonine protein kinase",1E-22,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-31,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",5e-24,"PHYPADRAFT_127611","hypothetical protein"]
["TRINITY_DN12117_c0_g1_i1@@W-35D-3@@KO",0.05085851617529851,0.05953007055645882,1.0724683380620692,0,1e-31,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-29,"AN8836.2","hypothetical protein",4E-14,"prkc","serine/threonine protein kinase",2e-29,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4e-28,"SKM1","Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; involved in down-regulation of sterol uptake; proposed to be a downstream effector of Cdc42p during polarized growth",7e-31,"PHYPADRAFT_119967","hypothetical protein"]
["Contig13796@@KO",0.03151378602280315,0.0737739928932406,1.196172686001447,0,2e-22,"MAPKKK7","mitogen-activated protein kinase kinase kinase 7 \\\\ MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required  for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following  pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules. \\\\ mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink).",2e-30,"AN8836.2","hypothetical protein",5e-16,"prkc","serine/threonine protein kinase",1E-22,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-31,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",6e-24,"PHYPADRAFT_127611","hypothetical protein"]
["Contig5011",1.9310439443412462,0.4794562333541126,35.99032842787633,0.31210688443262863,1E-83,"ATMAP4K ALPHA1","Protein kinase superfamily protein \\\\ ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15220.1); Has 132200 Blast hits to 130116 proteins in 4312 species: Archae - 185; Bacteria - 15420; Metazoa - 49247; Fungi - 12380; Plants - 32481; Viruses - 583; Other Eukaryotes - 21904 (source: NCBI BLink).",2e-94,"AN5674.2","hypothetical protein",1E-14,"prkc","serine/threonine protein kinase",8e-56,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",8e-63,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",1E-87,"PHYPADRAFT_182701","hypothetical protein"]
["Contig11600@@KO",0.5695742418175999,0.05128374126805148,15.562683119062877,0,2E-50,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-45,"AN5674.2","hypothetical protein",2E-12,"prkc","serine/threonine protein kinase",2E-45,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-35,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",1e-48,"PHYPADRAFT_119967","hypothetical protein"]
["Contig14115@@KO",0.10378791803917205,0,2.042698975872952,0,2e-39,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-44,"AN5674.2","hypothetical protein",5e-17,"prkc","serine/threonine protein kinase",6E-37,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-36,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",3e-40,"PHYPADRAFT_119967","hypothetical protein"]
["Contig14292@@KO",0.02213046771264266,0.02590378963948055,1.7111292584810545,0,1e-69,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-62,"AN5674.2","hypothetical protein",6e-18,"prkc","serine/threonine protein kinase",6e-64,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-55,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",7e-68,"PHYPADRAFT_119967","hypothetical protein"]
["Contig17866@@KO",0,0,1.4643317692770563,0,5e-68,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-63,"AN5674.2","hypothetical protein",6e-18,"prkc","serine/threonine protein kinase",2e-63,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",9e-53,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",9e-66,"PHYPADRAFT_119967","hypothetical protein"]
["Contig10057",0.23762411234936243,0.0654446711149715,8.430016286201953,0,4e-56,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2E-45,"AN5674.2","hypothetical protein",7e-12,"prkc","serine/threonine protein kinase",1e-48,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1E-41,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",2e-56,"PHYPADRAFT_119967","hypothetical protein"]
["Contig3152",18.619853369360825,16.225594223264835,10.892404442417163,11.650622515839926,8E-79,"AT5G14720","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79640.1); Has 122716 Blast hits to 120970 proteins in 3289 species: Archae - 117; Bacteria - 14305; Metazoa - 44836; Fungi - 12007; Plants - 31268; Viruses - 500; Other Eukaryotes - 19683 (source: NCBI BLink).",2e-56,"AN5674.2","hypothetical protein",5e-16,"prkc","serine/threonine protein kinase",2E-46,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-46,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",3e-81,"PHYPADRAFT_119152","hypothetical protein"]
["TRINITY_DN31972_c0_g1_i1@@W-35D-3@@KO",0,0,1.9787165253525696,0,9e-37,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-38,"AN5674.2","hypothetical protein",3e-13,"prkc","serine/threonine protein kinase",4e-34,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",7e-34,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",2e-37,"PHYPADRAFT_119967","hypothetical protein"]
["Contig14293@@KO",0.08492201035052294,0,1.1341575996438857,0,3E-65,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-58,"AN5674.2","hypothetical protein",4e-17,"prkc","serine/threonine protein kinase",5e-60,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4E-52,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",2e-63,"PHYPADRAFT_119967","hypothetical protein"]
["Contig15528@@KO",0.4731115917039329,0.06515044330649059,9.155036078902103,0.1855452375741502,2E-46,"AT1G79640","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G14720.1); Has 121160 Blast hits to 119540 proteins in 3705 species: Archae - 140; Bacteria - 14014; Metazoa - 45302; Fungi - 11299; Plants - 30637; Viruses - 505; Other Eukaryotes - 19263 (source: NCBI BLink).",3e-42,"AN5674.2","hypothetical protein",5e-19,"prkc","serine/threonine protein kinase",1e-33,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-33,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",6e-47,"PHYPADRAFT_119152","hypothetical protein"]
["TRINITY_DN31972_c0_g2_i1@@W-35D-3@@KO",0.10159778612275341,0,2.8208557599953794,0,2e-62,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-53,"AN5674.2","hypothetical protein",8e-18,"prkc","serine/threonine protein kinase",1E-56,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-52,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",3e-61,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN37765_c0_g3_i3@@W-35D-3@@KO",0.04252350910829669,0,1.76352104735702,0.028350729627375063,1e-65,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-58,"AN5674.2","hypothetical protein",1E-14,"prkc","serine/threonine protein kinase",1E-59,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5E-51,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",7e-64,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN31972_c0_g2_i2@@W-35D-3@@KO",0,0,1.1109337678162712,0,4e-44,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-41,"AN5674.2","hypothetical protein",6e-15,"prkc","serine/threonine protein kinase",1e-39,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-37,"SKM1","Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; involved in down-regulation of sterol uptake; proposed to be a downstream effector of Cdc42p during polarized growth",3e-44,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN31275_c0_g1_i1@@W-25D-2@@KO",17.08827643878205,15.0206331771684,9.915732118894821,11.54174617163051,7e-79,"AT5G14720","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79640.1); Has 122716 Blast hits to 120970 proteins in 3289 species: Archae - 117; Bacteria - 14305; Metazoa - 44836; Fungi - 12007; Plants - 31268; Viruses - 500; Other Eukaryotes - 19683 (source: NCBI BLink).",2e-56,"AN5674.2","hypothetical protein",4e-16,"prkc","serine/threonine protein kinase",2E-46,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-46,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",2e-81,"PHYPADRAFT_119152","hypothetical protein"]
["TRINITY_DN37765_c0_g3_i2@@W-35D-3@@KO",0.06128918780955351,0.023913069360727447,1.234981927808957,0,1E-61,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-54,"AN5674.2","hypothetical protein",7e-14,"prkc","serine/threonine protein kinase",5E-56,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3e-48,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",7e-60,"PHYPADRAFT_119967","hypothetical protein"]
["Contig13418@@KO",0.3368353031310164,0.08448576365480774,7.576473713954092,0,3e-83,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-65,"AN5674.2","hypothetical protein",4e-17,"prkc","serine/threonine protein kinase",6e-74,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-60,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",7e-83,"PHYPADRAFT_119967","hypothetical protein"]
["Contig6277",8.303155604054242,5.56387546449434,4.73219080240947,4.978115827423746,7e-53,"ATMAP4K ALPHA1","Protein kinase superfamily protein \\\\ ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15220.1); Has 132200 Blast hits to 130116 proteins in 4312 species: Archae - 185; Bacteria - 15420; Metazoa - 49247; Fungi - 12380; Plants - 32481; Viruses - 583; Other Eukaryotes - 21904 (source: NCBI BLink).",7e-58,"AN8033.2","hypothetical protein",1e-17,"prkc","serine/threonine protein kinase",3e-46,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-49,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",1E-56,"PHYPADRAFT_182701","hypothetical protein"]
["Contig6278",9.426343148908046,5.715586784048834,5.28278671413073,7.388664087179857,1E-61,"ATMAP4K ALPHA1","Protein kinase superfamily protein \\\\ ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15220.1); Has 132200 Blast hits to 130116 proteins in 4312 species: Archae - 185; Bacteria - 15420; Metazoa - 49247; Fungi - 12380; Plants - 32481; Viruses - 583; Other Eukaryotes - 21904 (source: NCBI BLink).",1E-61,"AN8033.2","hypothetical protein",4e-18,"prkc","serine/threonine protein kinase",2E-51,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1E-54,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",1e-66,"PHYPADRAFT_182701","hypothetical protein"]
["TRINITY_DN37999_c0_g1_i1@@W-35D-3@@KO",0.1535215439551969,0,2.8057063625333285,0,2e-40,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",5e-44,"AN2067.2","hypothetical protein",1E-13,"ybdm","serine/threonine protein kinase",1e-34,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-43,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4e-37,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN37999_c0_g1_i3@@W-35D-3@@KO",0.042192264636177534,0,0.8304058640963559,0.056259773106709224,2e-40,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",5e-44,"AN2067.2","hypothetical protein",9e-14,"ybdm","serine/threonine protein kinase",1e-34,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-43,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",3E-37,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN6379_c0_g1_i1@@W-35D-3@@KO",0,0,0.5512778425513624,0,2e-21,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",2e-26,"AN2067.2","hypothetical protein","","","",1e-20,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",3E-24,"CLA4","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family, along with Ste20p and Skm1p; involved in septin ring assembly, vacuole inheritance, cytokinesis, sterol uptake regulation; phosphorylates Cdc3p and Cdc10p",1e-20,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN19343_c0_g1_i2@@W-35D-5@@WT",1.7573055706419045,0.3789085814287304,1.7553227782838736,0.6166359336242302,6e-15,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",8e-18,"AN2067.2","hypothetical protein","","","",2E-14,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-17,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",4e-13,"PHYPADRAFT_119967","hypothetical protein"]
["Contig19331@@KO",0,0,6.318435804455043,0,5e-21,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",4e-27,"AN2067.2","hypothetical protein","","","",2e-20,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",9e-26,"CLA4","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family, along with Ste20p and Skm1p; involved in septin ring assembly, vacuole inheritance, cytokinesis, sterol uptake regulation; phosphorylates Cdc3p and Cdc10p",7e-21,"PHYPADRAFT_119967","hypothetical protein"]
["Contig1071",4.099293277093203,0.257623467246237,4.486526594173563,0.733698882293211,1e-36,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",1e-38,"AN8836.2","hypothetical protein","","","",4E-35,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-43,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",8e-33,"PHYPADRAFT_119967","hypothetical protein"]
["Contig14187",4.173732195662223,1.1195635209133084,5.704527240314097,1.9710489204080996,2e-36,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",7E-45,"AN8836.2","hypothetical protein","","","",1e-34,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",8e-45,"CLA4","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family, along with Ste20p and Skm1p; involved in septin ring assembly, vacuole inheritance, cytokinesis, sterol uptake regulation; phosphorylates Cdc3p and Cdc10p",4e-36,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN7791_c0_g1_i1@@W-25D-2@@KO",0.5053230994910126,0,0.7103930215967993,0,5e-12,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",8e-16,"AN8836.2","hypothetical protein","","","",3e-14,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2E-16,"SKM1","Member of the PAK family of serine/threonine protein kinases with similarity to Ste20p and Cla4p; involved in down-regulation of sterol uptake; proposed to be a downstream effector of Cdc42p during polarized growth",1e-12,"PHYPADRAFT_132764","hypothetical protein"]
["TRINITY_DN35130_c0_g1_i2@@W-35D-3@@KO",0.07602009786202514,0,1.2824463495142218,0,7e-16,"AT3G15220","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm, spindle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 133641 Blast hits to 131568 proteins in 4406 species: Archae - 196; Bacteria - 15456; Metazoa - 49688; Fungi - 12950; Plants - 32844; Viruses - 666; Other Eukaryotes - 21841 (source: NCBI BLink).",1e-15,"AN5674.2","hypothetical protein","","","",3e-15,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-15,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",1e-18,"PHYPADRAFT_119967","hypothetical protein"]
["Contig5010",1.3851611994039605,0.3172179159325408,23.24044105591183,0.28106428691044655,5e-70,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3e-69,"AN5674.2","hypothetical protein","","","",3E-65,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",6e-55,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",2e-68,"PHYPADRAFT_119967","hypothetical protein"]
["Contig21738@@KO",0.09471356454940838,0,4.948747889701054,0.021048738426444582,3e-27,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3E-24,"AN5674.2","hypothetical protein","","","",3e-19,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",2e-24,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",7e-25,"PHYPADRAFT_119967","hypothetical protein"]
["Contig16799@@KO",0.08340992450693807,0,1.2898521994632934,0,9e-25,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).",3E-24,"AN5674.2","hypothetical protein","","","",2e-21,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",1e-16,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",9e-24,"PHYPADRAFT_132764","hypothetical protein"]
["TRINITY_DN35130_c0_g1_i1@@W-35D-3@@KO",0,0,0.97310226201159,0,6e-12,"NP2","NPK1-related protein kinase 2 \\\\ member of MEKK subfamily \\\\ NPK1-related protein kinase 2 (NP2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 1 (TAIR:AT1G09000.1); Has 135537 Blast hits to 133200 proteins in 4901 species: Archae - 150; Bacteria - 15240; Metazoa - 51035; Fungi - 12941; Plants - 33422; Viruses - 585; Other Eukaryotes - 22164 (source: NCBI BLink).",5e-12,"AN5674.2","hypothetical protein","","","",3e-12,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",9E-13,"YAP3","Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in pheromone response, pseudohyphal/invasive growth, vacuole inheritance, down-regulation of sterol uptake; GBB motif binds Ste4p",6e-16,"PHYPADRAFT_119967","hypothetical protein"]
["TRINITY_DN43371_c0_g1_i1@@W-35D-3@@KO",0.12670016310337523,0,0.8905877427182096,0,3e-15,"AT3G15220","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm, spindle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 133641 Blast hits to 131568 proteins in 4406 species: Archae - 196; Bacteria - 15456; Metazoa - 49688; Fungi - 12950; Plants - 32844; Viruses - 666; Other Eukaryotes - 21841 (source: NCBI BLink).",2e-15,"AN5674.2","hypothetical protein","","","",1e-12,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",4e-11,"KIC1","Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; part of the RAM network that regulates cellular polarity and morphogenesis",5E-15,"PHYPADRAFT_182701","hypothetical protein"]
["TRINITY_DN15290_c0_g1_i1@@W-35D-5@@WT",7.729394815052395,5.163348714318585,4.225718489502943,5.8299316593028125,2e-38,"ATMAP4K ALPHA1","Protein kinase superfamily protein \\\\ ATMAP4K ALPHA1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response, response to wounding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15220.1); Has 132200 Blast hits to 130116 proteins in 4312 species: Archae - 185; Bacteria - 15420; Metazoa - 49247; Fungi - 12380; Plants - 32481; Viruses - 583; Other Eukaryotes - 21904 (source: NCBI BLink).",1e-45,"AN8033.2","hypothetical protein","","","",1E-26,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-28,"SPS1","Putative protein serine/threonine kinase expressed at the end of meiosis and localized to the prospore membrane, required for correct localization of enzymes involved in spore wall synthesis",2e-36,"PHYPADRAFT_182701","hypothetical protein"]
["Contig14391",6.482103954283899,2.597834200966247,4.506808411199368,3.5700713906706243,"","","","","","","","","",1e-12,"mapkkkk1","mitogen activated protein kinase kinase kinase kinase 1",5e-11,"DUN1","Cell-cycle checkpoint serine-threonine kinase required for DNA damage-induced transcription of certain target genes, phosphorylation of Rad55p and Sml1p, and transient G2/M arrest after DNA damage; also regulates postreplicative DNA repair","","",""]
["TRINITY_DN34490_c0_g1_i1@@W-35D-3@@KO",0.12356879025101045,0.1928502665935472,3.1847824031424947,0,2e-89,"GLY1","NAD-dependent glycerol-3-phosphate dehydrogenase family protein \\\\ Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved  in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous  glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway. \\\\ GLY1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase [NAD+] activity; INVOLVED IN: systemic acquired resistance, glycerol-3-phosphate metabolic process, glycerolipid biosynthetic process, glycerolipid metabolic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD-dependent glycerol-3-phosphate dehydrogenase family protein (TAIR:AT5G40610.1); Has 8663 Blast hits to 8662 proteins in 2795 species: Archae - 24; Bacteria - 5277; Metazoa - 643; Fungi - 297; Plants - 161; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).",1e-20,"AN6792.2","hypothetical protein",3e-62,"gpsa","glycerol-3-phosphate dehydrogenase",3e-84,"gpd1","glycerol-3-phosphate dehydrogenase",2e-20,"GPD1","NAD-dependent glycerol-3-phosphate dehydrogenase; key enzyme of glycerol synthesis, essential for growth under osmotic stress; expression regulated by high-osmolarity glycerol response pathway; protein abundance increases in response to DNA replication stress; constitutively inactivated via phosphorylation by the protein kinases YPK1 and YPK2, dephosphorylation increases catalytic activity; GPD1 has a paralog, GPD2, that arose from the whole genome duplication",5e-89,"PHYPADRAFT_137677","hypothetical protein"]
["Contig3363",11.199934985251552,7.593954154199805,2.5441754806162753,6.19221042502781,5E-71,"GLY1","NAD-dependent glycerol-3-phosphate dehydrogenase family protein \\\\ Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved  in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous  glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway. \\\\ GLY1; FUNCTIONS IN: glycerol-3-phosphate dehydrogenase [NAD+] activity; INVOLVED IN: systemic acquired resistance, glycerol-3-phosphate metabolic process, glycerolipid biosynthetic process, glycerolipid metabolic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: NAD-dependent glycerol-3-phosphate dehydrogenase family protein (TAIR:AT5G40610.1); Has 8663 Blast hits to 8662 proteins in 2795 species: Archae - 24; Bacteria - 5277; Metazoa - 643; Fungi - 297; Plants - 161; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).",7e-11,"AN6792.2","hypothetical protein",3E-43,"gpsa","glycerol-3-phosphate dehydrogenase",2e-69,"gpd1","glycerol-3-phosphate dehydrogenase",4e-21,"GPD2","NAD-dependent glycerol 3-phosphate dehydrogenase; expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria; constitutively active but is inactivated via phosphorylation by energy-stress responsive kinase SNF1; GPD2 has a paralog, GPD1, that arose from the whole genome duplication",7e-69,"PHYPADRAFT_197741","hypothetical protein"]
["Contig15485@@KO",0,0,2.1094052028743517,0,2e-17,"AT2G38970","Zinc finger (C3HC4-type RING finger) family protein \\\\ Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 4418 Blast hits to 4397 proteins in 764 species: Archae - 94; Bacteria - 1613; Metazoa - 1251; Fungi - 170; Plants - 535; Viruses - 5; Other Eukaryotes - 750 (source: NCBI BLink).","","","","","","",2e-11,"chlredraft_95368","hypothetical protein","","","","","",""]
["Contig14252",31.57236183325445,161.8605517869124,163.43823065822468,355.38152181370214,0,"SBE2.1","starch branching enzyme 2.1 \\\\ Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. \\\\ starch branching enzyme 2.1 (SBE2.1); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.2 (TAIR:AT5G03650.1); Has 15972 Blast hits to 15848 proteins in 2360 species: Archae - 125; Bacteria - 12355; Metazoa - 437; Fungi - 446; Plants - 1422; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).",0,"AN2314.2","similar to branching enzyme",2E-51,"glgb","1,4-alpha-glucan branching enzyme GlgB",0,"sbe3","starch branching enzyme",0,"GLC3","Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress",0,"PHYPADRAFT_203522","hypothetical protein"]
["TRINITY_DN8169_c0_g1_i1@@W-35D-3@@KO",0.11774852114498459,0,3.14512997401246,0,3e-167,"SBE2.2","starch branching enzyme 2.2 \\\\ Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves. \\\\ starch branching enzyme 2.2 (SBE2.2); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-177,"AN2314.2","similar to branching enzyme",7e-29,"glgb","1,4-alpha-glucan branching enzyme GlgB",5e-162,"sbe2","starch branching enzyme",1E-175,"GLC3","Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress",1e-163,"PHYPADRAFT_203522","hypothetical protein"]
["Contig11401@@KO",0,0,2.731135744335843,0,9e-36,"SBE2.2","starch branching enzyme 2.2 \\\\ Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves. \\\\ starch branching enzyme 2.2 (SBE2.2); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",5e-32,"AN2314.2","similar to branching enzyme","","","",2e-31,"sbe2","starch branching enzyme",7e-16,"GLC3","Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress",4e-31,"PHYPADRAFT_203522","hypothetical protein"]
["Contig22153@@KO",0.2988376260783057,0.13991619341821493,2.3526257170398828,0,4e-71,"STRS1","DEA(D/H)-box RNA helicase family protein \\\\ STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911; Bacteria - 25415; Metazoa - 8113; Fungi - 5284; Plants - 3075; Viruses - 103; Other Eukaryotes - 10213 (source: NCBI BLink).",2e-64,"AN7424.2","hypothetical protein",1e-37,"dead","ATP-dependent RNA helicase DbpA",4e-72,"chlredraft_129561","DEAD box RNA helicase",2e-77,"DBP3","RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype",9e-77,"PHYPADRAFT_205380","hypothetical protein"]
["Contig15978",6.429338039551257,4.631115445010274,5.562146590518223,4.920581507565642,2e-34,"AT2G47330","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).",1e-28,"AN5931.2","hypothetical protein",3e-20,"dead","ATP-dependent RNA helicase DbpA",6e-28,"chlredraft_129561","DEAD box RNA helicase",5e-33,"DBP2","ATP-dependent RNA helicase of the DEAD-box protein family; has a strong preference for dsRNA; involved mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites",2e-38,"PHYPADRAFT_147234","hypothetical protein"]
["TRINITY_DN5152_c0_g1_i1@@W-35D-3@@KO",0.08631764099871381,0,0.9707761211462237,0,1E-26,"AT3G16840","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink).",3e-19,"AN1750.2","hypothetical protein",3e-16,"csha","ATP-dependent RNA helicase",4e-16,"chlredraft_129561","DEAD box RNA helicase",5e-16,"MAK5","Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits",1e-24,"PHYPADRAFT_128071","hypothetical protein"]
["Contig6446",341.3730870920151,820.2515291089398,608.4420972730509,1055.4083334554566,7e-56,"GGPS1","geranylgeranyl pyrophosphate synthase 1 \\\\ Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. \\\\ geranylgeranyl pyrophosphate synthase 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT2G18620.1); Has 16617 Blast hits to 16612 proteins in 2936 species: Archae - 341; Bacteria - 9385; Metazoa - 291; Fungi - 423; Plants - 452; Viruses - 12; Other Eukaryotes - 5713 (source: NCBI BLink).","","","",2e-40,"ispa","farnesyl diphosphate synthase",3e-59,"ggps","geranylgeranyl diphosphate synthase","","","",1e-60,"PHYPADRAFT_201614","hypothetical protein"]
["Contig4386@@KO",4.276130504738913,1.8352494120234608,10.469972150330952,6.699678424558587,7e-62,"AT2G35920","RNA helicase family protein \\\\ RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink).",5e-31,"AN2138.2","hypothetical protein","","","",5e-28,"chlredraft_107301","ATP-dependent RNA helicase",2e-21,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",3e-54,"PHYPADRAFT_197737","hypothetical protein"]
["Contig11799",6.9542058351710185,3.4397046496927417,15.83205408103962,12.071726344723178,4e-67,"AT2G35920","RNA helicase family protein \\\\ RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink).",1e-30,"AN2138.2","hypothetical protein","","","",8e-29,"chlredraft_107301","ATP-dependent RNA helicase",2e-22,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",4e-60,"PHYPADRAFT_197737","hypothetical protein"]
["TRINITY_DN6369_c0_g1_i1@@W-35D-3@@KO",0,0,0.9921205472626309,0,1e-34,"AT2G01130","DEA(D/H)-box RNA helicase family protein \\\\ DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).",2e-31,"AN2138.2","hypothetical protein","","","",3e-20,"chlredraft_107301","ATP-dependent RNA helicase",4e-25,"YLR419W","Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene",5e-28,"PHYPADRAFT_175128","hypothetical protein"]
["Contig9603",0,0.06771644875047118,3.415861772070591,0.7714123762428621,2e-40,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",1e-33,"yfhf","epimerase family protein YfhF",5e-33,"chlredraft_122924","hypothetical protein","","","",2e-36,"PHYPADRAFT_131169","hypothetical protein"]
["TRINITY_DN41963_c0_g1_i1@@W-25D-2@@KO",0.42205963423397075,0,0,0.18759346422269602,1e-11,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",8e-11,"yfhf","epimerase family protein YfhF",7e-13,"chlredraft_122924","hypothetical protein","","","","","",""]
["TRINITY_DN22543_c0_g1_i1@@W-35D-3@@KO",0.04761698437511465,0,1.6065811411496844,0,2e-42,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",7e-33,"yfhf","epimerase family protein YfhF",1E-35,"chlredraft_122924","hypothetical protein","","","",2e-39,"PHYPADRAFT_131169","hypothetical protein"]
["Contig3922@@WT",21.63298371754264,22.638581068561802,5.554575561686913,12.923819354852457,2e-40,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",1e-21,"yfhf","epimerase family protein YfhF",7e-42,"chlredraft_122924","hypothetical protein","","","",5e-40,"PHYPADRAFT_131169","hypothetical protein"]
["Contig13869@@KO",0.16926349914591535,0,2.022608256313934,0,2e-21,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",8e-16,"yfhf","epimerase family protein YfhF",2e-17,"chlredraft_122924","hypothetical protein","","","",1e-20,"PHYPADRAFT_131169","hypothetical protein"]
["Contig3051@@KO",29.03294723378469,28.1662276689988,8.171187337615766,16.275714642419825,1e-40,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","",8e-22,"yfhf","epimerase family protein YfhF",5E-42,"chlredraft_122924","hypothetical protein","","","",4e-40,"PHYPADRAFT_131169","hypothetical protein"]
["Contig14271",8.532735299410527,5.905709191368148,5.424045348116658,7.717029767955564,2e-17,"SULA","NAD(P)-binding Rossmann-fold superfamily protein \\\\ A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. \\\\ SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink).","","","","","","",2E-19,"chlredraft_122924","hypothetical protein","","","",8e-16,"PHYPADRAFT_131169","hypothetical protein"]
["TRINITY_DN41221_c0_g1_i1@@W-35D-3@@KO",0.23464687246220756,0,0.659742255616522,0,"","","",5e-57,"AN0692.2","hypothetical protein","","","",8e-13,"chlredraft_172362","hypothetical protein",2e-57,"Z72995","Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","","",""]
["Contig359",8.310142204643295,3.6176960969435714,6.186576922255074,9.961859824239719,1E-56,"AT5G50310","Galactose oxidase/kelch repeat superfamily protein \\\\ Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G07720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",6e-40,"AN2090.2","hypothetical protein","","","",7e-40,"chlredraft_173694","hypothetical protein",5e-24,"KEL3","Cytoplasmic protein of unknown function",5e-50,"PHYPADRAFT_176143","hypothetical protein"]
["Contig21784@@KO",0,0,1.0687052912618515,0,2E-35,"AT5G37530","NAD(P)-binding Rossmann-fold superfamily protein \\\\ NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",4E-35,"AN4714.2","hypothetical protein",2E-19,"yrvm","hypothetical protein",3e-38,"chlredraft_138485","hypothetical protein",5e-32,"TCD2","tRNA threonylcarbamoyladenosine dehydratase; required for the ct6A tRNA base modification, where an adenosine at position 37 is modified to form a cyclized active ester with an oxazolone ring; localized to the mitochondrial outer membrane",3e-33,"PHYPADRAFT_206578","hypothetical protein"]
["TRINITY_DN11928_c0_g1_i1@@W-35D-3@@KO",0,0,2.2596427178457694,0,2e-30,"AT5G37530","NAD(P)-binding Rossmann-fold superfamily protein \\\\ NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",7e-20,"AN4714.2","hypothetical protein","","","",4e-27,"chlredraft_138485","hypothetical protein",5e-20,"TCD2","tRNA threonylcarbamoyladenosine dehydratase; required for the ct6A tRNA base modification, where an adenosine at position 37 is modified to form a cyclized active ester with an oxazolone ring; localized to the mitochondrial outer membrane",3E-32,"PHYPADRAFT_206578","hypothetical protein"]
["Contig15983",21.584277785824995,13.347268451079715,20.610744902907136,21.61274174649903,1e-17,"NRPB8B","RNA polymerase Rpb8 \\\\ One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II, IV and V; homologous to budding yeast  RPB8.  Probably redundant with At1g54250. \\\\ NRPB8B; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb8 (TAIR:AT1G54250.1); Has 513 Blast hits to 511 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).","","","","","","",4e-17,"rpb8","DNA-directed RNA polymerase II, 16.5 kDa polypeptide","","","",5e-22,"PHYPADRAFT_178386","hypothetical protein"]
["Contig13410",20.452087531655827,13.46911073569538,20.34752792097513,20.618156349920216,2e-39,"NRPB5","Eukaryotic rpb5 RNA polymerase subunit family protein \\\\ Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5. \\\\ NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).",2e-23,"AN0752.2","hypothetical protein","","","",1e-39,"rpb5","DNA-directed RNA polymerase II, 23 kDa polypeptide",8e-24,"RPB5","RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation",6e-40,"PHYPADRAFT_55574","hypothetical protein"]
["TRINITY_DN21416_c0_g1_i1@@W-35D-3@@KO",0.25340032620675046,0,1.7811754854364192,0,4e-26,"NRPB5","Eukaryotic rpb5 RNA polymerase subunit family protein \\\\ Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5. \\\\ NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).","","","","","","",4e-27,"rpb5","DNA-directed RNA polymerase II, 23 kDa polypeptide",3E-11,"RPB5","RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation",5e-24,"PHYPADRAFT_206246","hypothetical protein"]
["Contig3102",2.2248424728812735,1.3640973624819854,2.2340905232980024,1.8364895617302563,2e-24,"HSF1","heat shock factor 1 \\\\ native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation  and is heat-shock inducible \\\\ heat shock factor 1 (HSF1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1D (TAIR:AT1G32330.1); Has 101009 Blast hits to 12266 proteins in 352 species: Archae - 60; Bacteria - 127; Metazoa - 1552; Fungi - 3291; Plants - 964; Viruses - 2; Other Eukaryotes - 95013 (source: NCBI BLink).","","","","","","",3E-24,"hsf2","heat shock transcription factor 2",9e-14,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",4e-24,"PHYPADRAFT_212904","hypothetical protein"]
["Contig2788",13.325710575824685,7.2226883068696095,8.739101048836346,7.831048275044348,6e-47,"AT5G42150","Glutathione S-transferase family protein \\\\ Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",6e-22,"AN2747.2","hypothetical protein","","","",8e-23,"rpb6","subunit of DNA-directed RNA polymerase",2e-26,"SKI3","RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit",1e-47,"PHYPADRAFT_45591","hypothetical protein"]
["TRINITY_DN23198_c0_g1_i1@@W-35D-3@@KO",0.260509754196519,0.20328505055752671,5.493445034241781,0,8e-26,"NRPB6A","RNA polymerase Rpb6 \\\\ One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630. \\\\ NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink).",3e-20,"AN2747.2","hypothetical protein","","","",1e-17,"rpb6","subunit of DNA-directed RNA polymerase",5e-26,"SKI3","RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit",2e-27,"PHYPADRAFT_142855","hypothetical protein"]
["Contig13693",11.319661306573089,6.503294610196539,5.328798941810143,5.850578190365352,7e-33,"AT5G42150","Glutathione S-transferase family protein \\\\ Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-22,"AN2747.2","hypothetical protein","","","",6e-23,"rpb6","subunit of DNA-directed RNA polymerase",9e-27,"SKI3","RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit",6E-34,"PHYPADRAFT_45591","hypothetical protein"]
["TRINITY_DN18221_c0_g2_i1@@W-35D-5@@WT",9.789011959171052,4.181381958014908,4.891557944480102,9.310179272568364,3e-47,"AT5G42150","Glutathione S-transferase family protein \\\\ Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8e-22,"AN2747.2","hypothetical protein","","","",1E-22,"rpb6","subunit of DNA-directed RNA polymerase",3e-26,"SKI3","RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit",5e-48,"PHYPADRAFT_45591","hypothetical protein"]
["Contig16823",2.432056858336511,7.040769887304775,1.4354717601139266,2.1784632623358835,2e-20,"HSF A4A","heat shock transcription factor  A4A \\\\ member of Heat Stress Transcription Factor (Hsf) family \\\\ heat shock transcription factor  A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).",1E-13,"AN8035.2","hypothetical protein","","","",2e-17,"hsf1","heat shock transcription factor 1",1e-15,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",1e-17,"PHYPADRAFT_130937","hypothetical protein"]
["Contig2907@@WT",2.771908742363212,6.7991964875443704,0.9455478141408951,2.9079634087126855,2e-20,"HSF A4A","heat shock transcription factor  A4A \\\\ member of Heat Stress Transcription Factor (Hsf) family \\\\ heat shock transcription factor  A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).",1E-13,"AN8035.2","hypothetical protein","","","",2e-17,"hsf1","heat shock transcription factor 1",9e-16,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",1e-17,"PHYPADRAFT_130937","hypothetical protein"]
["TRINITY_DN23159_c0_g1_i1@@W-25D-4@@WT",2.1665727890677164,5.573260582305495,1.062491888405678,2.250685306802067,2e-20,"HSF A4A","heat shock transcription factor  A4A \\\\ member of Heat Stress Transcription Factor (Hsf) family \\\\ heat shock transcription factor  A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).",9e-14,"AN8035.2","hypothetical protein","","","",2e-17,"hsf1","heat shock transcription factor 1",7e-16,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",1e-17,"PHYPADRAFT_130937","hypothetical protein"]
["Contig2905@@WT",2.1219633326428387,5.023980178247256,1.3898521233605714,1.8648690288671348,2e-20,"HSF A4A","heat shock transcription factor  A4A \\\\ member of Heat Stress Transcription Factor (Hsf) family \\\\ heat shock transcription factor  A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).",1E-13,"AN8035.2","hypothetical protein","","","",2e-17,"hsf1","heat shock transcription factor 1",8e-16,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",1e-17,"PHYPADRAFT_130937","hypothetical protein"]
["Contig15662",5.309592609191654,14.885435430977006,4.36936293618115,5.871125993245883,2e-20,"HSF A4A","heat shock transcription factor  A4A \\\\ member of Heat Stress Transcription Factor (Hsf) family \\\\ heat shock transcription factor  A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).",2e-13,"AN8035.2","hypothetical protein","","","",3e-17,"hsf1","heat shock transcription factor 1",1e-15,"HSF1","Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated",2e-17,"PHYPADRAFT_130937","hypothetical protein"]
["Contig10808",437.3782327488083,372.6804145065194,64.05621199377737,145.76317859486483,1e-115,"SBP2","selenium-binding protein 2 \\\\ selenium-binding protein 2 (SBP2); FUNCTIONS IN: selenium binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 907 Blast hits to 897 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).","","","","","","",2E-109,"sbd1","selenium binding protein","","","",9e-121,"PHYPADRAFT_159322","hypothetical protein"]
["Contig10220",5.391471456666207,3.8565609764179634,3.9300775227048734,4.459883326842806,2e-31,"AT5G06550","CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).",3e-30,"AN2933.2","hypothetical protein","","","",2e-28,"chlredraft_188711","JmjC protein","","","",1e-29,"PHYPADRAFT_139383","hypothetical protein"]
["Contig12346",23.233274094653808,11.118125167131087,11.123371868740925,21.673265917353238,3e-13,"AT3G61870","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).","","","","","","",2e-25,"tef9","hypothetical protein","","","",2e-21,"PHYPADRAFT_128900","hypothetical protein"]
["Contig5395",0.6194230196165011,0.3625184023750046,1.781175485436419,0.26280150023660337,"","","","","","","","","",3e-14,"chlredraft_142507","hypothetical protein","","","","","",""]
["Contig14692",8.620518491713097,6.965018255105682,3.217405014186208,4.679267959695699,"","","","","","","","","",3e-16,"chlredraft_142507","hypothetical protein","","","","","",""]
["Contig16785@@KO",0.18100023300482176,0,2.188301310679029,0,"","","","","","","","","",6e-21,"chlredraft_142507","hypothetical protein","","","","","",""]
["Contig12341",19.11509416065157,13.757058289857415,14.443670113702685,14.333934523827113,0,"NRPC1","nuclear RNA polymerase C1 \\\\ Encodes a subunit of RNA polymerase III (aka RNA polymerase C). \\\\ nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).",0,"AN2512.2","hypothetical protein",6e-55,"rpoc","DNA-directed RNA polymerase subunit beta'",2e-138,"rpb1","DNA-directed RNA polymerase II, largest subunit",0,"RPO31","RNA polymerase III largest subunit C160, part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21",0,"PHYPADRAFT_177840","hypothetical protein"]
["TRINITY_DN35003_c1_g1_i1@@W-35D-3@@KO",0,0,1.7159493408993112,0,3e-113,"NRPC1","nuclear RNA polymerase C1 \\\\ Encodes a subunit of RNA polymerase III (aka RNA polymerase C). \\\\ nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).",1e-121,"AN2512.2","hypothetical protein",4e-33,"rpoc","DNA-directed RNA polymerase subunit beta'",6E-79,"rpb1","DNA-directed RNA polymerase II, largest subunit",1E-127,"RPO31","RNA polymerase III largest subunit C160, part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21",2e-123,"PHYPADRAFT_177840","hypothetical protein"]
["Contig12068@@KO",0.02723535875635093,0,2.6801597185008093,0.07263203894480248,4e-129,"NRPC1","nuclear RNA polymerase C1 \\\\ Encodes a subunit of RNA polymerase III (aka RNA polymerase C). \\\\ nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).",4e-119,"AN2512.2","hypothetical protein",3e-12,"rpoc","DNA-directed RNA polymerase subunit beta'",1E-52,"rpb1","DNA-directed RNA polymerase II, largest subunit",5e-123,"RPO31","RNA polymerase III largest subunit C160, part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21",2e-139,"PHYPADRAFT_177840","hypothetical protein"]
["Contig16746",0.8929475703315968,0.825156509448529,0.8589052286605553,0.5640011744309256,9e-88,"ATCG00180.1","DNA-directed RNA polymerase family protein \\\\ RNA polymerase beta' subunit-1 \\\\ RPOC1; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1).",6E-34,"AN0809.2","similar to RNA polymerase II largest subunit",8e-102,"rpoc","DNA-directed RNA polymerase subunit beta'",2e-25,"rpb1","DNA-directed RNA polymerase II, largest subunit",1e-31,"RPO31","RNA polymerase III largest subunit C160, part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21",4E-50,"PHYPADRAFT_157406","hypothetical protein"]
["TRINITY_DN35003_c1_g2_i1@@W-35D-3@@KO",0.03587041041502842,0.04198644049180705,2.823929875585952,0.04783012167267415,5e-128,"NRPB1","RNA polymerase II large subunit \\\\ Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. \\\\ RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink).",6e-110,"AN0809.2","similar to RNA polymerase II largest subunit",5e-19,"rpoc","DNA-directed RNA polymerase subunit beta'",3e-118,"rpb1","DNA-directed RNA polymerase II, largest subunit",4e-110,"RPO21","RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime",2E-125,"PHYPADRAFT_101222","hypothetical protein"]
["TRINITY_DN21745_c0_g1_i1@@W-35D-3@@KO",0,0,2.6978292108683326,0,1e-128,"NRPB1","RNA polymerase II large subunit \\\\ Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. \\\\ RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink).",6e-120,"AN0809.2","similar to RNA polymerase II largest subunit",1e-23,"rpoc","DNA-directed RNA polymerase subunit beta'",1e-109,"rpb1","DNA-directed RNA polymerase II, largest subunit",2e-114,"RPO21","RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime",2E-131,"PHYPADRAFT_101222","hypothetical protein"]
["Contig81",82.64106882075481,57.01491808725734,52.335112003908165,41.69948141610615,0,"NRPB1","RNA polymerase II large subunit \\\\ Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. \\\\ RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink).",0,"AN0809.2","similar to RNA polymerase II largest subunit",4E-55,"rpoc","DNA-directed RNA polymerase subunit beta'",0,"rpb1","DNA-directed RNA polymerase II, largest subunit",0,"RPO21","RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime",0,"PHYPADRAFT_101222","hypothetical protein"]
["Contig20267@@KO",0.22926696180610756,0.03354472229768712,5.177071366301211,0.019106741726385705,0,"NRPB1","RNA polymerase II large subunit \\\\ Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit. \\\\ RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink).",8e-160,"AN0809.2","similar to RNA polymerase II largest subunit","","","",2e-156,"rpb1","DNA-directed RNA polymerase II, largest subunit",5e-153,"RPO21","RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime",0,"PHYPADRAFT_101222","hypothetical protein"]
["Contig13617",4.9577683731737014,0.622930046650262,8.584183548299785,8.963742000867285,2e-22,"NRPA1","nuclear RNA polymerase A1 \\\\ Encodes a subunit of RNA polymerase I (aka RNA polymerase A). \\\\ nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink).",2e-11,"AN0809.2","similar to RNA polymerase II largest subunit","","","",2e-11,"rpb1","DNA-directed RNA polymerase II, largest subunit",1E-25,"RPA190","RNA polymerase I largest subunit A190",4e-13,"PHYPADRAFT_101222","hypothetical protein"]
["Contig14548",11.874917985755236,6.458415294806185,14.206754283632462,22.83161755426789,5e-67,"RPAC43","RNA polymerase I subunit 43 \\\\ RNA polymerase I subunit 43 (RPAC43); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT1G60850.1); Has 1342 Blast hits to 1342 proteins in 354 species: Archae - 247; Bacteria - 1; Metazoa - 281; Fungi - 345; Plants - 107; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).",2E-52,"AN2415.2","hypothetical protein","","","",1E-22,"rpb3","DNA-directed RNA polymerase II, 36 kDa polypeptide",2e-53,"RPC40","RNA polymerase subunit AC40, common to RNA polymerase I and III",1e-67,"PHYPADRAFT_107528","hypothetical protein"]
["Contig19545@@KO",0.3641298805155826,0.06088789929664216,1.5357025613930808,0,3e-56,"RPAC43","RNA polymerase I subunit 43 \\\\ RNA polymerase I subunit 43 (RPAC43); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT1G60850.1); Has 1342 Blast hits to 1342 proteins in 354 species: Archae - 247; Bacteria - 1; Metazoa - 281; Fungi - 345; Plants - 107; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).",3e-46,"AN2415.2","hypothetical protein","","","",2e-27,"rpb3","DNA-directed RNA polymerase II, 36 kDa polypeptide",4e-48,"RPC40","RNA polymerase subunit AC40, common to RNA polymerase I and III",2e-59,"PHYPADRAFT_107528","hypothetical protein"]
["Contig6629",23.06927916745837,13.023412467461055,15.175237501539753,14.291572751382777,7e-37,"NRPB3","DNA-directed RNA polymerase family protein \\\\ Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. \\\\ NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).",3e-29,"AN6252.2","hypothetical protein","","","",4e-22,"rpb3","DNA-directed RNA polymerase II, 36 kDa polypeptide",2e-33,"RPB3","RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subunit",4e-37,"PHYPADRAFT_129844","hypothetical protein"]
["Contig16781@@KO",0.17263528199742761,0.20207019965778053,3.458389931583422,0,1e-57,"NRPB3","DNA-directed RNA polymerase family protein \\\\ Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V. \\\\ NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).",1e-37,"AN6252.2","hypothetical protein","","","",4e-36,"rpb3","DNA-directed RNA polymerase II, 36 kDa polypeptide",9e-39,"RPB3","RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subunit",2E-55,"PHYPADRAFT_129844","hypothetical protein"]
["TRINITY_DN18429_c0_g1_i1@@W-35D-3@@KO",0.04320185023066234,0,3.5833059765838553,0,4e-124,"NRPB2","DNA-directed RNA polymerase family protein \\\\ Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. \\\\ NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).",3e-118,"AN9120.2","similar to AF107793_1 DNA-dependent RNA polymerase II RPB140",3e-30,"rpob","DNA-directed RNA polymerase subunit beta",8e-114,"rpb2","DNA-directed RNA polymerase II, 135 kDa polypeptide",2E-120,"RPB2","RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit",3e-129,"PHYPADRAFT_165263","hypothetical protein"]
["TRINITY_DN28918_c0_g1_i1@@W-35D-3@@KO",0.13788848299555873,0,3.1984640459244913,0,1e-131,"NRPB2","DNA-directed RNA polymerase family protein \\\\ Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. \\\\ NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).",6e-110,"AN9120.2","similar to AF107793_1 DNA-dependent RNA polymerase II RPB140",5e-11,"rpob","DNA-directed RNA polymerase subunit beta",7e-110,"rpb2","DNA-directed RNA polymerase II, 135 kDa polypeptide",8e-117,"RPB2","RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit",6e-131,"PHYPADRAFT_165263","hypothetical protein"]
["Contig11432",44.123210330934675,29.66748814704914,35.67301135993654,27.761970735090795,0,"NRPB2","DNA-directed RNA polymerase family protein \\\\ Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. \\\\ NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).",0,"AN9120.2","similar to AF107793_1 DNA-dependent RNA polymerase II RPB140",9e-49,"rpob","DNA-directed RNA polymerase subunit beta",0,"rpb2","DNA-directed RNA polymerase II, 135 kDa polypeptide",0,"RPB2","RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit",0,"PHYPADRAFT_165263","hypothetical protein"]
["Contig22638@@KO",0.45245696799807733,0.04073865069405857,10.152700266987589,0.0928173284828761,2e-27,"NRPB2","DNA-directed RNA polymerase family protein \\\\ Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. \\\\ NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).",4e-21,"AN9120.2","similar to AF107793_1 DNA-dependent RNA polymerase II RPB140","","","",7e-99,"rpb2","DNA-directed RNA polymerase II, 135 kDa polypeptide",1e-23,"RPB2","RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit",1E-26,"PHYPADRAFT_165263","hypothetical protein"]
["Contig21882@@KO",0,0,3.0597178886811913,0,8e-23,"NRPB2","DNA-directed RNA polymerase family protein \\\\ Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit. \\\\ NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).","","","","","","",4e-23,"rpb2","DNA-directed RNA polymerase II, 135 kDa polypeptide",6e-20,"RPB2","RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit",6e-22,"PHYPADRAFT_165263","hypothetical protein"]
["Contig1428",35.24865663450126,24.60405412819893,21.68374725896356,19.785726998596207,3e-31,"ERD4","Early-responsive to dehydration stress protein (ERD4) \\\\ early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G02900.1); Has 1361 Blast hits to 1266 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 651; Plants - 396; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).",1E-25,"AN0229.2","hypothetical protein","","","",6e-21,"erm4","ERD4-related membrane protein",3e-18,"RSN1","Membrane protein of unknown function; overexpression suppresses NaCl sensitivity of sro7 mutant cells by restoring sodium pump (Ena1p) localization to the plasma membrane",4e-36,"PHYPADRAFT_229842","hypothetical protein"]
["Contig3751",119.5161398491793,158.21851120980534,99.60816630486981,149.35124181044267,9e-74,"AT1G55930","CBS domain-containing protein / transporter associated domain-containing protein \\\\ CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT3G13070.1); Has 15725 Blast hits to 15720 proteins in 2584 species: Archae - 144; Bacteria - 11495; Metazoa - 247; Fungi - 139; Plants - 193; Viruses - 0; Other Eukaryotes - 3507 (source: NCBI BLink).",2e-38,"AN0229.2","hypothetical protein",6e-40,"yhdt","hypothetical protein",1e-37,"erm3","ERD4-related membrane protein",1e-28,"PHM7","Protein of unknown function; expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole; protein abundance increases in response to DNA replication stress",5e-76,"PHYPADRAFT_201957","hypothetical protein"]
["Contig324",3.32397483879083,0.8762892210453165,3.578353238537437,1.916642553606315,"","","","","","","","","",6E-11,"erm3","ERD4-related membrane protein","","","","","",""]
["TRINITY_DN30122_c1_g1_i1@@W-35D-3@@KO",0,0,1.9916780428061778,0,2e-18,"AT4G22120","ERD (early-responsive to dehydration stress) family protein \\\\ ERD (early-responsive to dehydration stress) family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G04340.1); Has 1475 Blast hits to 1296 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 185; Fungi - 716; Plants - 435; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).","","","","","","",9e-12,"erm3","ERD4-related membrane protein","","","",3e-17,"PHYPADRAFT_84744","hypothetical protein"]
["Contig11917@@KO",1.3671104018808635,0.20872271651894203,16.37801853769191,0.07925759530945181,3E-11,"HVA22A","HVA22 homologue A \\\\ Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. \\\\ HVA22 homologue A (HVA22A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue C (TAIR:AT1G69700.1); Has 1523 Blast hits to 1523 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 690; Fungi - 215; Plants - 516; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).",7e-21,"AN2279.2","hypothetical protein","","","",3e-14,"chlredraft_143837","hypothetical protein",3e-13,"YOP1","Membrane protein that interacts with Yip1p to mediate membrane traffic; interacts with Sey1p to maintain ER morphology; overexpression leads to cell death and accumulation of internal cell membranes; mutants have reduced phosphatidylserine transfer between the ER and mitochondria; forms ER foci upon DNA replication stress",2e-11,"PHYPADRAFT_17826","hypothetical protein"]
["TRINITY_DN56488_c0_g1_i1@@W-35D-3@@KO",0,0,0.7743584949397314,0,3e-66,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",7e-65,"AN1913.2","hypothetical protein",4e-49,"lyss","lysine--tRNA ligase",2e-72,"chlredraft_138493","lysyl-trna synthetase, LysRS",1e-65,"KRS1","Lysyl-tRNA synthetase",8e-67,"PHYPADRAFT_233001","hypothetical protein"]
["TRINITY_DN54797_c0_g1_i1@@W-35D-3@@KO",0.1207004339313491,0,0.5090490384562022,0.8047184816238213,5e-14,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",2E-12,"AN1913.2","hypothetical protein",5e-19,"lyss","lysine--tRNA ligase",3e-15,"chlredraft_138493","lysyl-trna synthetase, LysRS",1e-12,"KRS1","Lysyl-tRNA synthetase",6e-16,"PHYPADRAFT_233001","hypothetical protein"]
["Contig7272@@KO",33.3300551209537,27.98997467644854,28.82417242236917,40.64383997506729,2e-151,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",9e-132,"AN1913.2","hypothetical protein",2E-92,"lyss","lysine--tRNA ligase",8e-159,"chlredraft_138493","lysyl-trna synthetase, LysRS",1e-132,"KRS1","Lysyl-tRNA synthetase",3e-147,"PHYPADRAFT_233001","hypothetical protein"]
["TRINITY_DN40128_c0_g1_i1@@W-35D-3@@KO",0,0,0.8686802367476012,0,2E-52,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",5e-50,"AN1913.2","hypothetical protein",1e-33,"lyss","lysine--tRNA ligase",2E-55,"chlredraft_138493","lysyl-trna synthetase, LysRS",3e-50,"KRS1","Lysyl-tRNA synthetase",3e-55,"PHYPADRAFT_233001","hypothetical protein"]
["Contig11184@@KO",0.957214271032073,0.21861905221596084,11.356145341738273,0,1e-158,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",8e-152,"AN1913.2","hypothetical protein",5e-98,"lyss","lysine--tRNA ligase",2e-172,"chlredraft_138493","lysyl-trna synthetase, LysRS",4e-151,"KRS1","Lysyl-tRNA synthetase",1e-164,"PHYPADRAFT_233001","hypothetical protein"]
["TRINITY_DN25440_c0_g1_i1@@W-35D-5@@WT",0.12819957331761636,0,0.1802254485264069,0.5128294702419264,4E-41,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",1e-44,"AN1913.2","hypothetical protein",8e-37,"lyss","lysine--tRNA ligase",1e-44,"chlredraft_138493","lysyl-trna synthetase, LysRS",3e-45,"KRS1","Lysyl-tRNA synthetase",5e-40,"PHYPADRAFT_138021","hypothetical protein"]
["Contig17104@@WT",31.370933940323052,26.080973452882034,26.047914016581256,37.383613804295365,2e-151,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",9e-132,"AN1913.2","hypothetical protein",2E-92,"lyss","lysine--tRNA ligase",8e-159,"chlredraft_138493","lysyl-trna synthetase, LysRS",1e-132,"KRS1","Lysyl-tRNA synthetase",3e-147,"PHYPADRAFT_233001","hypothetical protein"]
["TRINITY_DN29707_c0_g1_i1@@W-35D-5@@WT",0,0.15606036958185512,0,0.3555617660344023,7e-13,"OVA5","Lysyl-tRNA synthetase, class II \\\\ Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast.  Plants mutated in this gene exhibit an ovule abortion phenotype. \\\\ OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 27489 Blast hits to 22097 proteins in 2943 species: Archae - 404; Bacteria - 18954; Metazoa - 615; Fungi - 809; Plants - 266; Viruses - 0; Other Eukaryotes - 6441 (source: NCBI BLink).",4E-14,"AN1913.2","hypothetical protein",2e-17,"lyss","lysine--tRNA ligase",5e-14,"chlredraft_138493","lysyl-trna synthetase, LysRS",1E-13,"MSK1","Mitochondrial lysine-tRNA synthetase, required for import of both aminoacylated and deacylated forms of tRNA(Lys) into mitochondria and for aminoacylation of mitochondrially encoded tRNA(Lys)",4E-14,"PHYPADRAFT_224886","hypothetical protein"]
["Contig349@@WT",33.08100387608771,27.002577716136614,27.494566734045073,40.95884112471434,2e-151,"ATKRS-1","lysyl-tRNA synthetase 1 \\\\ lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).",9e-132,"AN1913.2","hypothetical protein",2E-92,"lyss","lysine--tRNA ligase",8e-159,"chlredraft_138493","lysyl-trna synthetase, LysRS",1e-132,"KRS1","Lysyl-tRNA synthetase",3e-147,"PHYPADRAFT_233001","hypothetical protein"]
["Contig3001",190.09928987948993,165.0841828875156,62.422731318962406,146.62143792924007,"","","","","","","","","",1e-12,"chlredraft_122918","hypothetical protein","","","",8e-13,"PHYPADRAFT_144170","hypothetical protein"]
["Contig22016@@KO",0.2696419152542273,0,4.169746220418052,0,1e-20,"AT4G33720","CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein \\\\ CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: basic pathogenesis-related protein 1 (TAIR:AT2G14580.1); Has 3131 Blast hits to 3024 proteins in 381 species: Archae - 0; Bacteria - 70; Metazoa - 1690; Fungi - 339; Plants - 919; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).",4e-12,"AN1058.2","hypothetical protein","","","",3e-14,"prl4","predicted extracellular protein",2e-11,"PRY3","Cell wall-associated protein involved in export of acetylated sterols; member of the CAP protein superfamily (cysteine-rich secretory proteins (CRISP), antigen 5, and pathogenesis related 1 proteins); role in mating efficiency; expression of full-length transcript is daughter cell-specific; in response to alpha factor, a short transcript starting at +452 is expressed and the long form is repressed by Ste12p",5e-19,"PHYPADRAFT_206343","hypothetical protein"]
["Contig9426",13.751799688371555,20.937152496316152,10.03984924830509,17.14096631773743,1e-43,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",2e-25,"elg15","exostosin-like glycosyltransferase","","","",2e-37,"PHYPADRAFT_194463","hypothetical protein"]
["TRINITY_DN25867_c0_g3_i4@@W-25D-4@@WT",11.584801869843396,15.784595733450793,8.456711435202477,13.133545782010627,1e-43,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",2e-25,"elg15","exostosin-like glycosyltransferase","","","",2e-37,"PHYPADRAFT_194463","hypothetical protein"]
["TRINITY_DN25867_c0_g3_i1@@W-25D-4@@WT",13.351124902571598,24.622901748780425,10.55962212137587,16.355217757531843,9e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",1E-25,"elg15","exostosin-like glycosyltransferase","","","",2e-37,"PHYPADRAFT_194463","hypothetical protein"]
["TRINITY_DN25867_c0_g3_i3@@W-25D-4@@WT",13.583459889056556,21.73698004890125,9.870823177293335,16.537391326600073,9e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",1E-25,"elg15","exostosin-like glycosyltransferase","","","",2e-37,"PHYPADRAFT_194463","hypothetical protein"]
["Contig6247@@WT",12.213113019455081,19.079305525547813,9.206309563666629,14.882897694393659,8e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",1E-25,"elg15","exostosin-like glycosyltransferase","","","",2e-37,"PHYPADRAFT_194463","hypothetical protein"]
["TRINITY_DN26899_c0_g1_i1@@W-35D-3@@KO",0.14191524819220852,0,1.330048069911038,0,"","","",6e-56,"AN7136.2","hypothetical protein","","","",7e-66,"chlredraft_57990","hypothetical protein",3E-65,"GUD1","Guanine deaminase, a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures",9e-30,"PHYPADRAFT_233220","hypothetical protein"]
["Contig23246@@KO",0,0,0.9317965828210407,0,"","","",7e-18,"AN6815.2","hypothetical protein","","","",1e-16,"chlredraft_57990","hypothetical protein",8e-15,"GUD1","Guanine deaminase, a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures","","",""]
["TRINITY_DN26899_c1_g1_i1@@W-35D-3@@KO",0,0,0.5588642348800508,0,"","","",8e-12,"AN6815.2","hypothetical protein","","","",6e-17,"chlredraft_57990","hypothetical protein",7e-14,"GUD1","Guanine deaminase, a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures","","",""]
["Contig835",29.603741232873706,17.677686137934728,30.382597328476496,22.71620132652859,2E-85,"AT4G33670","NAD(P)-linked oxidoreductase superfamily protein \\\\ Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis \\\\ NAD(P)-linked oxidoreductase superfamily protein; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60750.1); Has 28637 Blast hits to 28630 proteins in 2499 species: Archae - 653; Bacteria - 20546; Metazoa - 1049; Fungi - 1796; Plants - 827; Viruses - 0; Other Eukaryotes - 3766 (source: NCBI BLink).",2e-29,"AN7621.2","hypothetical protein",2e-20,"iols","aldo/keto reductase family protein IolS",1e-23,"chlredraft_205783","galactose dehydrogenase",3e-25,"ARA2","NAD-dependent arabinose dehydrogenase, involved in biosynthesis of dehydro-D-arabinono-1,4-lactone; similar to plant L-galactose dehydrogenase",1e-85,"PHYPADRAFT_193915","hypothetical protein"]
["Contig3439",21.18769403686151,10.216122770313968,14.697930493275985,12.583849691146373,1e-68,"AT4G33670","NAD(P)-linked oxidoreductase superfamily protein \\\\ Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis \\\\ NAD(P)-linked oxidoreductase superfamily protein; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60750.1); Has 28637 Blast hits to 28630 proteins in 2499 species: Archae - 653; Bacteria - 20546; Metazoa - 1049; Fungi - 1796; Plants - 827; Viruses - 0; Other Eukaryotes - 3766 (source: NCBI BLink).",3e-27,"AN7621.2","hypothetical protein",5e-13,"iols","aldo/keto reductase family protein IolS",4e-17,"chlredraft_205783","galactose dehydrogenase",4e-22,"ARA2","NAD-dependent arabinose dehydrogenase, involved in biosynthesis of dehydro-D-arabinono-1,4-lactone; similar to plant L-galactose dehydrogenase",7E-72,"PHYPADRAFT_193915","hypothetical protein"]
["Contig7612",71.44890924764765,42.451359984081364,55.81763107389596,44.45878011333131,5e-78,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",6e-63,"AN2909.2","hypothetical protein","","","",4e-69,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",1e-60,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",5e-75,"PHYPADRAFT_180457","hypothetical protein"]
["TRINITY_DN31366_c0_g1_i1@@W-35D-3@@KO",0.0649647013213708,0,3.424823928144239,0,4e-23,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",4e-24,"AN6164.2","hypothetical protein","","","",2e-15,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",4e-19,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",2e-23,"PHYPADRAFT_180457","hypothetical protein"]
["Contig1719",31.759834840363393,27.33293848988466,27.97500082865861,25.95209619803951,4e-75,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",4e-21,"AN6164.2","hypothetical protein","","","",8e-72,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",4e-62,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",2E-73,"PHYPADRAFT_216093","hypothetical protein"]
["Contig16643@@WT",12.648882004565483,9.514014721532384,6.078225893406172,4.691870563061058,1e-29,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",6e-32,"AN6164.2","hypothetical protein","","","",8e-34,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",2e-29,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",6e-31,"PHYPADRAFT_187320","hypothetical protein"]
["Contig16703@@KO",0,0,1.2851519325300746,0,2e-31,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",5e-12,"AN6164.2","hypothetical protein","","","",6e-31,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",6e-26,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",9e-33,"PHYPADRAFT_216093","hypothetical protein"]
["Contig4117",14.014594626797555,9.862710333316782,7.131593605969344,5.0933832958557925,1e-29,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",7e-32,"AN6164.2","hypothetical protein","","","",9e-34,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",2e-29,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",7e-31,"PHYPADRAFT_187320","hypothetical protein"]
["TRINITY_DN33433_c2_g1_i1@@W-35D-3@@KO",0.023940030818427806,0,4.173264640131915,0,1e-37,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",5e-61,"AN6164.2","hypothetical protein","","","",9e-35,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",8e-39,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",3e-38,"PHYPADRAFT_216093","hypothetical protein"]
["TRINITY_DN48444_c0_g1_i1@@W-35D-3@@KO",0.03971719136696089,0,1.0050335736339686,0,1e-30,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).",5e-46,"AN6164.2","hypothetical protein","","","",4e-24,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",3e-33,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",7e-30,"PHYPADRAFT_216093","hypothetical protein"]
["TRINITY_DN11637_c0_g1_i1@@W-35D-3@@KO",0,0,0.8231919135395342,0,8e-42,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).","","","","","","",1e-33,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",1e-32,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",2e-42,"PHYPADRAFT_180457","hypothetical protein"]
["Contig11775@@KO",0.15257554852589553,0,3.431898681798622,0,4e-29,"UBP12","ubiquitin-specific protease 12 \\\\ Encodes a ubiquitin-specific protease. \\\\ ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-30,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",1E-25,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",5e-29,"PHYPADRAFT_180457","hypothetical protein"]
["TRINITY_DN54955_c0_g1_i1@@W-35D-3@@KO",0,0,1.1944353255279516,0,2e-11,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).","","","","","","",9E-13,"chlredraft_121621","biquitin carboxyl-terminal hydrolase",6E-11,"UBP15","Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p",6E-11,"PHYPADRAFT_187320","hypothetical protein"]
["TRINITY_DN24133_c1_g1_i1@@W-35D-3@@KO",0.07045765167699891,0,0.8914566088086664,0,5e-11,"UBP13","ubiquitin-specific protease 13 \\\\ ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).","","","","","","",1e-11,"chlredraft_121621","biquitin carboxyl-terminal hydrolase","","","",6e-12,"PHYPADRAFT_216093","hypothetical protein"]
["Contig20660@@KO",0.24073030989641292,0.24152200054334722,10.007661691744909,0.18342472057330278,4e-63,"AT5G56450","Mitochondrial substrate carrier family protein \\\\ Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-60,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",3e-62,"ant1","adenine nucleotide translocator",6e-60,"AAC3","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication",4e-68,"PHYPADRAFT_222782","hypothetical protein"]
["Contig13523@@KO",0.040084602942973474,0,8.170998364735617,0,1E-56,"AT5G56450","Mitochondrial substrate carrier family protein \\\\ Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4E-55,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",6E-49,"ant1","adenine nucleotide translocator",4E-52,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",4e-61,"PHYPADRAFT_222782","hypothetical protein"]
["Contig7083",13.959383371751395,1.9696939850137054,325.97963840465536,1.274907038406672,2e-105,"AAC3","ADP/ATP carrier 3 \\\\ Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). \\\\ ADP/ATP carrier 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, mitochondrial transport, purine nucleotide transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 20286 Blast hits to 12392 proteins in 480 species: Archae - 0; Bacteria - 0; Metazoa - 9416; Fungi - 5054; Plants - 3787; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).",2E-99,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",8e-102,"ant1","adenine nucleotide translocator",7e-91,"AAC3","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication",1E-107,"PHYPADRAFT_61287","hypothetical protein"]
["Contig14250",54.902924086602354,37.17517610635952,516.8122992312123,663.0533627829424,1e-67,"AAC1","ADP/ATP carrier 1 \\\\ mitochondrial ADP/ATP carrier \\\\ ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19855 Blast hits to 12531 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8964; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).",3e-69,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",2e-65,"ant1","adenine nucleotide translocator",8e-69,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",1e-69,"PHYPADRAFT_222782","hypothetical protein"]
["TRINITY_DN21028_c0_g1_i1@@W-35D-3@@KO",0.08861238401094955,0,2.7406062070395945,0,2e-24,"AAC3","ADP/ATP carrier 3 \\\\ Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). \\\\ ADP/ATP carrier 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, mitochondrial transport, purine nucleotide transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 20286 Blast hits to 12392 proteins in 480 species: Archae - 0; Bacteria - 0; Metazoa - 9416; Fungi - 5054; Plants - 3787; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).",2e-26,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",1e-21,"ant1","adenine nucleotide translocator",8e-27,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",3E-24,"PHYPADRAFT_128315","hypothetical protein"]
["Contig20523@@KO",0.10304745726838128,0,2.390290907091014,0,6e-56,"AAC3","ADP/ATP carrier 3 \\\\ Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). \\\\ ADP/ATP carrier 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, mitochondrial transport, purine nucleotide transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 20286 Blast hits to 12392 proteins in 480 species: Archae - 0; Bacteria - 0; Metazoa - 9416; Fungi - 5054; Plants - 3787; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).",3e-55,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",3e-54,"ant1","adenine nucleotide translocator",2E-50,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",2E-55,"PHYPADRAFT_154659","hypothetical protein"]
["Contig14336",0.7470940651957643,0.5062756998685409,0.9397236181785247,0.9961859824239718,4E-51,"AAC2","ADP/ATP carrier 2 \\\\ Encodes mitochondrial ADP/ATP carrier \\\\ ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",4E-51,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",8e-52,"ant1","adenine nucleotide translocator",1E-52,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",5e-49,"PHYPADRAFT_147925","hypothetical protein"]
["Contig17716@@KO",0.6049766950276346,0.08851591642949898,12.916786203549655,0,3e-48,"AAC2","ADP/ATP carrier 2 \\\\ Encodes mitochondrial ADP/ATP carrier \\\\ ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-48,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",4e-43,"ant1","adenine nucleotide translocator",4e-49,"PET9","Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication",4e-46,"PHYPADRAFT_222782","hypothetical protein"]
["TRINITY_DN33790_c0_g1_i1@@W-25D-2@@KO",0.3751641193190851,0.21956545503940655,0.3955597506618541,0.2501246189635947,5e-21,"AT5G56450","Mitochondrial substrate carrier family protein \\\\ Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-17,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",1e-15,"ant1","adenine nucleotide translocator",6e-17,"AAC1","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; phosphorylated; Aac1p is a minor isoform while Pet9p is the major ADP/ATP translocator; relocalizes from mitochondrion to cytoplasm upon DNA replication stress",3E-23,"PHYPADRAFT_222782","hypothetical protein"]
["Contig13494",0.39753629157205805,0.37225409258057185,0,0.4240644916006633,2e-34,"AAC3","ADP/ATP carrier 3 \\\\ Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). \\\\ ADP/ATP carrier 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, mitochondrial transport, purine nucleotide transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 20286 Blast hits to 12392 proteins in 480 species: Archae - 0; Bacteria - 0; Metazoa - 9416; Fungi - 5054; Plants - 3787; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).",5e-33,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",3E-37,"ant1","adenine nucleotide translocator",4e-38,"AAC3","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication",7e-35,"PHYPADRAFT_147925","hypothetical protein"]
["TRINITY_DN46720_c0_g1_i1@@W-35D-3@@KO",0,0,0.4557321815605402,0,2e-32,"AAC1","ADP/ATP carrier 1 \\\\ mitochondrial ADP/ATP carrier \\\\ ADP/ATP carrier 1 (AAC1); FUNCTIONS IN: binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 19855 Blast hits to 12531 proteins in 484 species: Archae - 0; Bacteria - 0; Metazoa - 8964; Fungi - 5060; Plants - 3882; Viruses - 0; Other Eukaryotes - 1949 (source: NCBI BLink).",8e-28,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",4e-28,"ant1","adenine nucleotide translocator",2e-29,"AAC3","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication",3e-30,"PHYPADRAFT_147925","hypothetical protein"]
["TRINITY_DN15587_c0_g1_i1@@W-35D-3@@KO",0,0,2.000233485436361,0,1e-18,"AAC3","ADP/ATP carrier 3 \\\\ Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). \\\\ ADP/ATP carrier 3 (AAC3); FUNCTIONS IN: binding, ATP:ADP antiporter activity; INVOLVED IN: transport, mitochondrial transport, purine nucleotide transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 2 (TAIR:AT5G13490.2); Has 20286 Blast hits to 12392 proteins in 480 species: Archae - 0; Bacteria - 0; Metazoa - 9416; Fungi - 5054; Plants - 3787; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).",2e-18,"AN4064.2","ADT_NEUCR ADP,ATP CARRIER PROTEIN (ADP/ATP TRANSLOCASE) (ADENINE NUCLEOTIDE TRANSLOCATOR) (ANT)","","","",6e-17,"ant1","adenine nucleotide translocator",1e-20,"AAC3","Mitochondrial inner membrane ADP/ATP translocator; exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Aac1p; has roles in maintenance of viability and in respiration; AAC3 has a paralog, PET9, that arose from the whole genome duplication",8e-19,"PHYPADRAFT_61287","hypothetical protein"]
["TRINITY_DN22488_c0_g1_i1@@W-35D-3@@KO",0.03226467295707694,0.07553182444393584,3.0390063345711176,0,2e-86,"MAC3B","MOS4-associated  complex 3B \\\\ Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19.  Associated with the MOS4-Associated Complex (MAC).  Involved in plant innate immunity. \\\\ MOS4-associated  complex 3B (MAC3B); FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: defense response to bacterium; LOCATED IN: cell wall, chloroplast, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), U box domain (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated  complex 3A (TAIR:AT1G04510.1); Has 62315 Blast hits to 29584 proteins in 885 species: Archae - 64; Bacteria - 8492; Metazoa - 24454; Fungi - 13690; Plants - 7490; Viruses - 0; Other Eukaryotes - 8125 (source: NCBI BLink).",9e-56,"AN6906.2","hypothetical protein","","","",4E-73,"prp19","spliceosome component, nuclear pre-mRNA splicing factor",1E-25,"PRP19","Dubious open reading frame unlikely to encode a functional protein; overlaps 3' end of essential PRP19 gene encoding an RNA splicing factor",2e-84,"PHYPADRAFT_203375","hypothetical protein"]
["Contig11720",5.961525126606711,4.716601615706385,5.276817463606289,5.888284023499656,"","","","","","","","","",3e-12,"prp19","spliceosome component, nuclear pre-mRNA splicing factor","","","","","",""]
["Contig9137@@WT",2.1153939042865892,1.3578480975429126,1.1511723137371754,2.0017847457842333,"","","","","","","","","",2E-12,"prp19","spliceosome component, nuclear pre-mRNA splicing factor","","","","","",""]
["Contig13336@@KO",0.3469600551887802,0,3.4685381695046567,0.051404614751414925,9e-42,"AT1G03140","splicing factor Prp18 family protein \\\\ splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1); Has 624 Blast hits to 613 proteins in 206 species: Archae - 0; Bacteria - 5; Metazoa - 235; Fungi - 175; Plants - 58; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).",5e-26,"AN0632.2","hypothetical protein","","","",5e-31,"prp18","pre-mRNA splicing factor 18",8e-13,"PRP18","Splicing factor involved in the positioning of the 3' splice site during the second catalytic step of splicing, part of snRNP U5, interacts with Slu7p",5e-41,"PHYPADRAFT_198877","hypothetical protein"]
["Contig12036",14.851435560235142,10.392854673687346,8.67028145499799,9.263511041468885,5e-18,"AT1G10580","Transducin/WD40 repeat-like superfamily protein \\\\ Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54520.1); Has 62674 Blast hits to 30927 proteins in 942 species: Archae - 75; Bacteria - 8018; Metazoa - 23835; Fungi - 13551; Plants - 7464; Viruses - 27; Other Eukaryotes - 9704 (source: NCBI BLink).",3e-13,"AN5196.2","hypothetical protein","","","",3e-17,"prp17","nuclear pre-mRNA splicing factor, component of the spliceosome",4e-12,"CDC40","Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats",4e-18,"PHYPADRAFT_99420","hypothetical protein"]
["TRINITY_DN27765_c1_g1_i1@@W-35D-3@@KO",0.36825599814182153,0,0.8628357167411549,0,1E-73,"AT1G10580","Transducin/WD40 repeat-like superfamily protein \\\\ Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54520.1); Has 62674 Blast hits to 30927 proteins in 942 species: Archae - 75; Bacteria - 8018; Metazoa - 23835; Fungi - 13551; Plants - 7464; Viruses - 27; Other Eukaryotes - 9704 (source: NCBI BLink).",3e-47,"AN5196.2","hypothetical protein","","","",7e-33,"prp17","nuclear pre-mRNA splicing factor, component of the spliceosome",1e-39,"CDC40","Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats",6e-73,"PHYPADRAFT_99420","hypothetical protein"]
["TRINITY_DN27765_c0_g1_i1@@W-35D-3@@KO",0,0,2.01932160006383,0,7E-39,"AT1G10580","Transducin/WD40 repeat-like superfamily protein \\\\ Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54520.1); Has 62674 Blast hits to 30927 proteins in 942 species: Archae - 75; Bacteria - 8018; Metazoa - 23835; Fungi - 13551; Plants - 7464; Viruses - 27; Other Eukaryotes - 9704 (source: NCBI BLink).",2e-44,"AN5196.2","hypothetical protein","","","",3E-32,"prp17","nuclear pre-mRNA splicing factor, component of the spliceosome",1e-24,"CDC40","Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats",3e-47,"PHYPADRAFT_99420","hypothetical protein"]
["Contig16663@@KO",0.16844103316367087,0,1.4207860431935986,0,1e-57,"AT2G03667","Asparagine synthase family protein \\\\ Asparagine synthase family protein; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Glutamine amidotransferase, type II (InterPro:IPR017932); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",5e-46,"AN3677.2","hypothetical protein","","","",1E-42,"chlredraft_167865","hypothetical protein",2e-30,"YML096W","Putative protein of unknown function with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10",4e-58,"PHYPADRAFT_167036","hypothetical protein"]
["Contig6517",5.601274015169897,3.3043806279094974,3.21274693040145,2.927777209978209,1e-11,"HHP5","heptahelical protein 5 \\\\ heptahelical transmembrane protein HHP5 \\\\ heptahelical protein 5 (HHP5); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 2557 Blast hits to 2136 proteins in 523 species: Archae - 0; Bacteria - 635; Metazoa - 1083; Fungi - 463; Plants - 198; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).","","","","","","",1E-10,"chlredraft_128250","hypothetical protein","","","",2e-13,"PHYPADRAFT_197057","hypothetical protein"]
["Contig2821",8.591999431860046,5.387659982303142,6.970284715539002,8.850943514358049,"","","",2e-31,"AN6066.2","hypothetical protein","","","",1e-36,"chlredraft_192814","hypothetical protein","","","","","",""]
["TRINITY_DN22482_c0_g1_i1@@W-35D-3@@KO",0,0,1.3503591488111573,0,"","","",3E-24,"AN6066.2","hypothetical protein","","","",3e-20,"chlredraft_192814","hypothetical protein","","","","","",""]
["Contig7164",2.0439365934601095,0.4784869822085181,2.7584695065022884,0.43606631683464436,4e-12,"CT-BMY","chloroplast beta-amylase \\\\ Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). \\\\ chloroplast beta-amylase (CT-BMY); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 1 (TAIR:AT3G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1e-11,"amyb2","beta-amylase","","","","","",""]
["Contig11644@@WT",2.11474090416179,1.4560656492086963,4.022218096203696,3.2621516094304615,4e-31,"AT1G63290","Aldolase-type TIM barrel family protein \\\\ Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 8998 Blast hits to 8995 proteins in 2611 species: Archae - 49; Bacteria - 5545; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2948 (source: NCBI BLink).",1E-26,"AN7588.2","hypothetical protein",4e-24,"rpe","ribulose-phosphate 3-epimerase",3E-37,"rpe2","ribulose phosphate-3-epimerase",1e-20,"RPE1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO",2e-32,"PHYPADRAFT_158635","hypothetical protein"]
["Contig1700@@KO",4.000568220080544,1.3540276782407896,4.065597437280903,4.113284056460271,3E-32,"AT1G63290","Aldolase-type TIM barrel family protein \\\\ Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 8998 Blast hits to 8995 proteins in 2611 species: Archae - 49; Bacteria - 5545; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2948 (source: NCBI BLink).",2e-27,"AN7588.2","hypothetical protein",1e-24,"rpe","ribulose-phosphate 3-epimerase",6e-38,"rpe2","ribulose phosphate-3-epimerase",3e-21,"RPE1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO",2e-33,"PHYPADRAFT_158635","hypothetical protein"]
["TRINITY_DN18998_c0_g1_i1@@W-35D-3@@KO",0.11679637676914914,0.06835528317264544,2.134529975269628,0,3E-65,"AT3G01850","Aldolase-type TIM barrel family protein \\\\ Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).",1E-53,"AN7588.2","hypothetical protein",7e-42,"rpe","ribulose-phosphate 3-epimerase",4e-63,"rpe2","ribulose phosphate-3-epimerase",2e-59,"RPE1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO",8e-60,"PHYPADRAFT_158635","hypothetical protein"]
["TRINITY_DN44334_c0_g1_i1@@W-35D-3@@KO",0.09461016546147233,0.11074152863341248,0.26600961398220757,0.12615455672617987,2E-12,"AT1G63290","Aldolase-type TIM barrel family protein \\\\ Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 8998 Blast hits to 8995 proteins in 2611 species: Archae - 49; Bacteria - 5545; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2948 (source: NCBI BLink).",4e-12,"AN7588.2","hypothetical protein","","","",1e-16,"rpe2","ribulose phosphate-3-epimerase","","","",4E-14,"PHYPADRAFT_158635","hypothetical protein"]
["Contig13331",146.49129730903414,720.0457457345857,563.3862502269523,1094.1467549499828,2E-90,"RPE","D-ribulose-5-phosphate-3-epimerase \\\\ Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA \\\\ D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 9137 Blast hits to 9136 proteins in 2615 species: Archae - 52; Bacteria - 5574; Metazoa - 174; Fungi - 138; Plants - 190; Viruses - 0; Other Eukaryotes - 3009 (source: NCBI BLink).",7e-37,"AN7588.2","hypothetical protein",1E-70,"rpe","ribulose-phosphate 3-epimerase",6e-88,"rpe1","ribulose phosphate-3-epimerase, chloroplast precursor",9e-39,"RPE1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO",5e-87,"PHYPADRAFT_122169","hypothetical protein"]
["Contig6246@@WT",5.134652274669155,1.7590619692752456,3.4331385295882892,2.379617671888476,4e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",4e-26,"elg20","exostosin-like glycosyltransferase","","","",9e-41,"PHYPADRAFT_202121","hypothetical protein"]
["TRINITY_DN19950_c0_g1_i1@@W-35D-5@@WT",4.069955145399592,1.3338910737584986,2.9370992632111874,2.2793134500796453,5e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",5e-26,"elg20","exostosin-like glycosyltransferase","","","",1e-40,"PHYPADRAFT_202121","hypothetical protein"]
["TRINITY_DN37155_c1_g1_i2@@W-35D-3@@KO",0.29206250833020686,0,8.473025590463907,0,5e-20,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",1e-15,"elg20","exostosin-like glycosyltransferase","","","",1e-19,"PHYPADRAFT_202121","hypothetical protein"]
["Contig13756@@KO",0.6122620598521485,0,7.668320818225693,0,5e-20,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",1e-15,"elg20","exostosin-like glycosyltransferase","","","",1e-19,"PHYPADRAFT_202121","hypothetical protein"]
["Contig21706@@KO",4.900253576290388,1.9978503475694922,3.367032744197917,2.2759115583205864,5e-44,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",5e-26,"elg20","exostosin-like glycosyltransferase","","","",1e-40,"PHYPADRAFT_202121","hypothetical protein"]
["TRINITY_DN34994_c0_g1_i1@@W-25D-2@@KO",5.078749181355744,1.517794118127768,2.8356669074878056,2.1132723417672286,9e-38,"GUT2","Exostosin family protein \\\\ GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G61840.1); Has 1460 Blast hits to 1436 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 310; Fungi - 4; Plants - 1003; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).","","","","","","",5e-21,"elg20","exostosin-like glycosyltransferase","","","",4E-35,"PHYPADRAFT_202121","hypothetical protein"]
["TRINITY_DN26054_c1_g1_i1@@W-35D-3@@KO",0.1558685459760947,0,2.6294763281406706,0,1e-44,"ERO2","endoplasmic reticulum oxidoreductins 2 \\\\ endoplasmic reticulum oxidoreductin \\\\ endoplasmic reticulum oxidoreductins 2 (ERO2); FUNCTIONS IN: FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: oxidation reduction, protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: endoplasmic reticulum oxidoreductins 1 (TAIR:AT1G72280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",2e-21,"AN1510.2","hypothetical protein","","","",9e-38,"ero1","endoplasmic reticulum oxidoreductin 1",2e-29,"ERO1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C",4e-43,"PHYPADRAFT_183236","hypothetical protein"]
["Contig15929",6.833323450350954,4.5145397411236425,6.590247339876317,4.795606246242476,2e-37,"ERO2","endoplasmic reticulum oxidoreductins 2 \\\\ endoplasmic reticulum oxidoreductin \\\\ endoplasmic reticulum oxidoreductins 2 (ERO2); FUNCTIONS IN: FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: oxidation reduction, protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: endoplasmic reticulum oxidoreductins 1 (TAIR:AT1G72280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",9e-27,"AN1510.2","hypothetical protein","","","",3e-36,"ero1","endoplasmic reticulum oxidoreductin 1",3E-23,"ERO1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C",1e-38,"PHYPADRAFT_183236","hypothetical protein"]
["TRINITY_DN20093_c0_g1_i2@@W-25D-2@@KO",7.673618770624166,3.80301597690523,6.19720212227577,3.4179614001328895,1e-37,"ERO2","endoplasmic reticulum oxidoreductins 2 \\\\ endoplasmic reticulum oxidoreductin \\\\ endoplasmic reticulum oxidoreductins 2 (ERO2); FUNCTIONS IN: FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: oxidation reduction, protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: endoplasmic reticulum oxidoreductins 1 (TAIR:AT1G72280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",7e-27,"AN1510.2","hypothetical protein","","","",2e-36,"ero1","endoplasmic reticulum oxidoreductin 1",3E-23,"ERO1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C",1e-38,"PHYPADRAFT_183236","hypothetical protein"]
["TRINITY_DN21768_c0_g1_i2@@W-25D-4@@WT",7.047684247706657,4.085198974170935,6.399756588529141,3.2823746689362623,1e-37,"ERO2","endoplasmic reticulum oxidoreductins 2 \\\\ endoplasmic reticulum oxidoreductin \\\\ endoplasmic reticulum oxidoreductins 2 (ERO2); FUNCTIONS IN: FAD binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: oxidation reduction, protein thiol-disulfide exchange; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Endoplasmic reticulum oxidoreductin 1 (InterPro:IPR007266); BEST Arabidopsis thaliana protein match is: endoplasmic reticulum oxidoreductins 1 (TAIR:AT1G72280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",7e-27,"AN1510.2","hypothetical protein","","","",2e-36,"ero1","endoplasmic reticulum oxidoreductin 1",2e-23,"ERO1","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized ORF YML133C",1e-38,"PHYPADRAFT_183236","hypothetical protein"]
["Contig17247",5.416431972669291,3.336817112769929,1.8893182827664876,3.258202273341562,"","","","","","","","","",3E-23,"chlredraft_205791","alkane hydroxylase","","","","","",""]
["TRINITY_DN22993_c2_g1_i1@@W-35D-3@@KO",0.0927868432148915,0,1.0435323614890883,0,1e-29,"AT3G55870","ADC synthase superfamily protein \\\\ ADC synthase superfamily protein; FUNCTIONS IN: oxo-acid-lyase activity, anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, carpel, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 15837 Blast hits to 15836 proteins in 2536 species: Archae - 246; Bacteria - 10713; Metazoa - 5; Fungi - 310; Plants - 185; Viruses - 0; Other Eukaryotes - 4378 (source: NCBI BLink).",5e-43,"AN3695.2","hypothetical protein",3e-31,"pabb","para-aminobenzoate synthase component 1",7e-21,"ans1","anthranilate synthase, alpha subunit",5e-43,"TRP2","Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p",3E-32,"PHYPADRAFT_129600","hypothetical protein"]
["TRINITY_DN24673_c0_g1_i1@@W-25D-2@@KO",7.272412159108418,3.0502708600089865,4.345071722654828,7.4748780359505025,3e-114,"ASA2","anthranilate synthase 2 \\\\ Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis. \\\\ anthranilate synthase 2 (ASA2); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 16475 Blast hits to 16472 proteins in 2614 species: Archae - 246; Bacteria - 11051; Metazoa - 5; Fungi - 314; Plants - 193; Viruses - 0; Other Eukaryotes - 4666 (source: NCBI BLink).",9E-68,"AN3695.2","hypothetical protein",9E-68,"pabb","para-aminobenzoate synthase component 1",7E-94,"ans1","anthranilate synthase, alpha subunit",2e-60,"TRP2","Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p",4e-126,"PHYPADRAFT_190951","hypothetical protein"]
["TRINITY_DN25351_c1_g1_i1@@W-25D-4@@WT",6.996787436016691,2.8774846822838938,4.595299497402113,7.312402591683195,3e-116,"ASA2","anthranilate synthase 2 \\\\ Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis. \\\\ anthranilate synthase 2 (ASA2); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 16475 Blast hits to 16472 proteins in 2614 species: Archae - 246; Bacteria - 11051; Metazoa - 5; Fungi - 314; Plants - 193; Viruses - 0; Other Eukaryotes - 4666 (source: NCBI BLink).",8e-68,"AN3695.2","hypothetical protein",1e-67,"pabb","para-aminobenzoate synthase component 1",4e-96,"ans1","anthranilate synthase, alpha subunit",2e-61,"TRP2","Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p",5e-126,"PHYPADRAFT_190951","hypothetical protein"]
["Contig13087",6.732866620094951,3.115063282598447,5.883769603545564,7.794828479796181,6e-135,"ASA2","anthranilate synthase 2 \\\\ Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis. \\\\ anthranilate synthase 2 (ASA2); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 16475 Blast hits to 16472 proteins in 2614 species: Archae - 246; Bacteria - 11051; Metazoa - 5; Fungi - 314; Plants - 193; Viruses - 0; Other Eukaryotes - 4666 (source: NCBI BLink).",4e-68,"AN3695.2","hypothetical protein",1e-67,"pabb","para-aminobenzoate synthase component 1",3e-113,"ans1","anthranilate synthase, alpha subunit",2e-61,"TRP2","Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p",4e-142,"PHYPADRAFT_139162","hypothetical protein"]
["TRINITY_DN22993_c0_g1_i1@@W-35D-3@@KO",0,0.3563439352278893,1.4266089368132444,0,8e-12,"AT3G55870","ADC synthase superfamily protein \\\\ ADC synthase superfamily protein; FUNCTIONS IN: oxo-acid-lyase activity, anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, carpel, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 15837 Blast hits to 15836 proteins in 2536 species: Archae - 246; Bacteria - 10713; Metazoa - 5; Fungi - 310; Plants - 185; Viruses - 0; Other Eukaryotes - 4378 (source: NCBI BLink).",9e-23,"AN3695.2","hypothetical protein",2E-16,"trpe","anthranilate synthase component 1",3e-13,"ans1","anthranilate synthase, alpha subunit",7e-26,"TRP2","Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p",5e-14,"PHYPADRAFT_190951","hypothetical protein"]
["Contig1806",4.644992491911662,2.3994183647336054,3.341653736592795,2.0354882177359466,1e-120,"AT2G33730","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).",2e-102,"AN1634.2","hypothetical protein",5e-28,"csha","ATP-dependent RNA helicase",6e-117,"prp28","pre-mRNA-splicing ATP-dependent RNA helicase",7e-44,"PRP28","RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site",1E-117,"PHYPADRAFT_212087","hypothetical protein"]
["TRINITY_DN31202_c0_g1_i1@@W-35D-3@@KO",0.20091865122729985,0.07839199399397669,1.7888838182945677,0,5e-50,"AT2G33730","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).",3e-47,"AN1634.2","hypothetical protein",1E-26,"csha","ATP-dependent RNA helicase",1e-43,"prp28","pre-mRNA-splicing ATP-dependent RNA helicase",3E-37,"X55993","Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs; protein abundance increases in response to DNA replication stress",8e-47,"PHYPADRAFT_212087","hypothetical protein"]
["Contig15331@@KO",0.06261771066669701,0,3.8292698983869378,0,1e-95,"AT2G33730","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).",8e-66,"AN1634.2","hypothetical protein",1E-26,"csha","ATP-dependent RNA helicase",4e-91,"prp28","pre-mRNA-splicing ATP-dependent RNA helicase",7e-48,"PRP28","RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site",3e-85,"PHYPADRAFT_114798","hypothetical protein"]
["Contig14688",135.28183665071634,246.9562455555725,129.69621345529012,251.25604204468783,9e-98,"APR2","5'adenylylphosphosulfate reductase 2 \\\\ encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. \\\\ 5'adenylylphosphosulfate reductase 2 (APR2); FUNCTIONS IN: adenylyl-sulfate reductase activity, phosphoadenylyl-sulfate reductase (thioredoxin) activity; INVOLVED IN: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin), sulfate assimilation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5&apos;-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 3 (TAIR:AT4G21990.1); Has 5381 Blast hits to 4904 proteins in 1602 species: Archae - 157; Bacteria - 2618; Metazoa - 1060; Fungi - 451; Plants - 490; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).",3e-16,"AN4770.2","MT16_EMENI Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3''-phosphoadenylylsulfate reductase)",1e-31,"yitb","phosphoadenosine phosphosulfate reductase",2e-96,"met16","adenylylphosphosulfate reductase",5e-14,"MET16","3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism",1e-93,"PHYPADRAFT_109847","hypothetical protein"]
["TRINITY_DN15834_c0_g1_i1@@W-25D-4@@WT",195.0674645686196,374.65698361791084,212.41697208912507,454.4967651416447,4e-98,"APR2","5'adenylylphosphosulfate reductase 2 \\\\ encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. \\\\ 5'adenylylphosphosulfate reductase 2 (APR2); FUNCTIONS IN: adenylyl-sulfate reductase activity, phosphoadenylyl-sulfate reductase (thioredoxin) activity; INVOLVED IN: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin), sulfate assimilation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Thioredoxin-independent 5&apos;-adenylylsulphate reductase (InterPro:IPR004508), Thioredoxin fold (InterPro:IPR012335), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: APS reductase 3 (TAIR:AT4G21990.1); Has 5381 Blast hits to 4904 proteins in 1602 species: Archae - 157; Bacteria - 2618; Metazoa - 1060; Fungi - 451; Plants - 490; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).",1e-16,"AN4770.2","MT16_EMENI Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3''-phosphoadenylylsulfate reductase)",5e-32,"yitb","phosphoadenosine phosphosulfate reductase",1e-96,"met16","adenylylphosphosulfate reductase",2E-14,"MET16","3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism",5e-94,"PHYPADRAFT_109847","hypothetical protein"]
["Contig5350@@KO",8.618934373996161,4.711658699124315,12.715840990128719,6.882937465447378,2e-29,"AT3G52760","Integral membrane Yip1 family protein \\\\ Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).",6e-31,"AN6989.2","hypothetical protein","","","",7e-24,"chlredraft_34401","integral membrane Yip1-family protein",1e-31,"YIP1","Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; homolog of human YIPF4",4E-35,"PHYPADRAFT_114869","hypothetical protein"]
["Contig2179",3.856535946955129,2.76807330597539,4.500945206523466,3.0563086312151078,2e-28,"AT3G52760","Integral membrane Yip1 family protein \\\\ Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).",4e-30,"AN6989.2","hypothetical protein","","","",1E-22,"chlredraft_34401","integral membrane Yip1-family protein",1e-30,"YIP1","Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; homolog of human YIPF4",3E-34,"PHYPADRAFT_114869","hypothetical protein"]
["Contig5597@@WT",8.65708149510586,5.228271148850141,12.235028802087063,9.333024039372727,2e-29,"AT3G52760","Integral membrane Yip1 family protein \\\\ Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).",7e-31,"AN6989.2","hypothetical protein","","","",7e-24,"chlredraft_34401","integral membrane Yip1-family protein",1e-31,"YIP1","Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; homolog of human YIPF4",4E-35,"PHYPADRAFT_114869","hypothetical protein"]
["TRINITY_DN6921_c0_g1_i1@@W-35D-3@@KO",0.20091865122729985,0.23517598198193004,2.071339158025289,0.17860521477771368,5e-21,"AT2G36300","Integral membrane Yip1 family protein \\\\ Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G52760.1); Has 658 Blast hits to 658 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 123; Plants - 111; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).",6e-26,"AN6989.2","hypothetical protein","","","",2e-11,"chlredraft_34401","integral membrane Yip1-family protein",1E-26,"YIP1","Integral membrane protein required for the biogenesis of ER-derived COPII transport vesicles; interacts with Yif1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles; homolog of human YIPF4",2e-25,"PHYPADRAFT_174056","hypothetical protein"]
["Contig4582",6.303963704791212,0.038835850010798555,167.5428760751275,0.4866513451657688,7e-79,"ARPC1B","actin-related protein C1B \\\\ putative ARP2/3 protein complex subunit p41 \\\\ actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).",8e-86,"AN5778.2","hypothetical protein","","","",9e-32,"chlredraft_177203","hypothetical protein",3e-61,"ARC40","Subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches",6e-84,"PHYPADRAFT_160291","hypothetical protein"]
["Contig21977@@KO",0.2577858375310425,0.0822925150580361,5.864296314301106,0,2e-96,"RPA1A","replication protein A 1A \\\\ Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. \\\\ replication protein A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 932 Blast hits to 912 proteins in 229 species: Archae - 16; Bacteria - 0; Metazoa - 191; Fungi - 147; Plants - 421; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).",3e-92,"AN7423.2","hypothetical protein","","","",7e-67,"rpa70a","replication protein A, 70 kDa DNA-binding subunit",2e-84,"RFA1","Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination",2e-93,"PHYPADRAFT_144964","hypothetical protein"]
["Contig4386",36.40298749426795,18.92921864303615,27.616261448577976,24.4549041960738,2e-63,"RPA70B","RPA70-kDa subunit B \\\\ Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. \\\\ RPA70-kDa subunit B (RPA70B); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G61000.1); Has 1056 Blast hits to 1045 proteins in 226 species: Archae - 10; Bacteria - 0; Metazoa - 213; Fungi - 147; Plants - 535; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).",2e-57,"AN7423.2","hypothetical protein","","","",4e-58,"rpa70a","replication protein A, 70 kDa DNA-binding subunit",2e-54,"RFA1","Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination",7e-67,"PHYPADRAFT_11886","hypothetical protein"]
["Contig22537@@KO",0.08214493986986603,0,2.367359493534547,0,2e-18,"AT5G38840","SMAD/FHA domain-containing protein  \\\\ SMAD/FHA domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein  (TAIR:AT5G47790.1); Has 18317 Blast hits to 13795 proteins in 1254 species: Archae - 157; Bacteria - 2798; Metazoa - 7417; Fungi - 1475; Plants - 704; Viruses - 54; Other Eukaryotes - 5712 (source: NCBI BLink).",8e-12,"AN2893.2","hypothetical protein","","","",5e-13,"chlredraft_174174","hypothetical protein","","","","","",""]
["Contig5792@@KO",0.4078254661774525,0,2.866644781267084,0,8e-11,"DDL","SMAD/FHA domain-containing protein  \\\\ Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL. \\\\ DAWDLE (DDL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, production of miRNAs involved in gene silencing by miRNA; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24410.1); Has 20960 Blast hits to 11868 proteins in 728 species: Archae - 18; Bacteria - 1126; Metazoa - 10847; Fungi - 2610; Plants - 1671; Viruses - 61; Other Eukaryotes - 4627 (source: NCBI BLink).","","","","","","",4e-12,"chlredraft_174174","hypothetical protein","","","","","",""]
["Contig17537@@KO",0.24412087764143284,0,2.144936676124139,0,2E-19,"AT5G38840","SMAD/FHA domain-containing protein  \\\\ SMAD/FHA domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein  (TAIR:AT5G47790.1); Has 18317 Blast hits to 13795 proteins in 1254 species: Archae - 157; Bacteria - 2798; Metazoa - 7417; Fungi - 1475; Plants - 704; Viruses - 54; Other Eukaryotes - 5712 (source: NCBI BLink).","","","","","","",4E-14,"chlredraft_174174","hypothetical protein","","","",4e-13,"PHYPADRAFT_117331","hypothetical protein"]
["Contig14229",2.594814776641209,1.5300380673772604,2.3861816926463404,2.1592252676222428,7e-48,"AT5G51300","splicing factor-related \\\\ splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 986600 Blast hits to 958298 proteins in 35154 species: Archae - 20434; Bacteria - 569558; Metazoa - 210103; Fungi - 32531; Plants - 60683; Viruses - 65853; Other Eukaryotes - 27438 (source: NCBI BLink).","","","","","","",1e-21,"chlredraft_117598","hypothetical protein",9e-40,"MSL5","Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA",8e-48,"PHYPADRAFT_185832","hypothetical protein"]
["Contig251@@KO",3.001606051520899,1.3472399092808587,2.6968110084185786,1.7754939749243916,6e-48,"AT5G51300","splicing factor-related \\\\ splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 986600 Blast hits to 958298 proteins in 35154 species: Archae - 20434; Bacteria - 569558; Metazoa - 210103; Fungi - 32531; Plants - 60683; Viruses - 65853; Other Eukaryotes - 27438 (source: NCBI BLink).","","","","","","",1e-21,"chlredraft_117598","hypothetical protein",8e-40,"MSL5","Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA",6e-48,"PHYPADRAFT_185832","hypothetical protein"]
["Contig10490",446.10607587973584,534.0021199774118,217.82413674346392,335.02053257591274,2e-143,"CAC2","acetyl Co-enzyme a carboxylase biotin carboxylase subunit \\\\ Encodes biotin carboxylase subunit (CAC2). \\\\ acetyl Co-enzyme a carboxylase biotin carboxylase subunit (CAC2); FUNCTIONS IN: biotin carboxylase activity, acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, biotin carboxylase (InterPro:IPR004549), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylation domain (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (TAIR:AT1G03090.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",9e-97,"AN4462.2","similar to pyruvate carboxylase",6e-142,"accc","acetyl-CoA carboxylase biotin carboxylase subunit",1e-132,"chlredraft_122970","biotin carboxylase, acetyl-CoA carboxylase component",1E-99,"dur1","",7e-140,"PHYPADRAFT_113929","hypothetical protein"]
["TRINITY_DN20506_c0_g1_i1@@W-35D-3@@KO",0.05396196236781361,0.06316266514832243,1.0620508373934714,0,3e-74,"CAC2","acetyl Co-enzyme a carboxylase biotin carboxylase subunit \\\\ Encodes biotin carboxylase subunit (CAC2). \\\\ acetyl Co-enzyme a carboxylase biotin carboxylase subunit (CAC2); FUNCTIONS IN: biotin carboxylase activity, acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, biotin carboxylase (InterPro:IPR004549), PreATP-grasp-like fold (InterPro:IPR016185), Biotin carboxylation domain (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (TAIR:AT1G03090.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-60,"AN4690.2","hypothetical protein",8E-73,"accc","acetyl-CoA carboxylase biotin carboxylase subunit",9e-73,"chlredraft_122970","biotin carboxylase, acetyl-CoA carboxylase component",2e-58,"dur1","",3e-72,"PHYPADRAFT_113929","hypothetical protein"]
["Contig15624",1.8787064744363413,1.1349845060498556,1.363159756127005,2.1010467992941955,2e-15,"UPM1","urophorphyrin methylase 1 \\\\ Encodes a urophorphyrin III methylase that  catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. \\\\ urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","",2E-12,"sumt","uroporphyrinogen-iii C-methyltransferase",1e-15,"sumt1","S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase","","","",3e-15,"PHYPADRAFT_15921","hypothetical protein"]
["Contig14482@@KO",31.868032718203363,36.190389499337,92.01175120971028,170.06764604718572,1e-76,"PHT3;1","phosphate transporter 3;1 \\\\ phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink).",2e-69,"AN2977.2","hypothetical protein","","","",6e-85,"mpc1b","mitochondrial phosphate carrier 1",4e-57,"PIC2","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature",3e-81,"PHYPADRAFT_145758","hypothetical protein"]
["TRINITY_DN1956_c0_g1_i1@@W-35D-3@@KO",0,0,1.5876650623272774,0,5e-49,"PHT3;2","phosphate transporter 3;2 \\\\ phosphate transporter 3;2 (PHT3;2); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast, membrane; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;1 (TAIR:AT5G14040.1); Has 16855 Blast hits to 11571 proteins in 428 species: Archae - 0; Bacteria - 0; Metazoa - 7278; Fungi - 4810; Plants - 3237; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).",4e-44,"AN2977.2","hypothetical protein","","","",5e-49,"mpc1b","mitochondrial phosphate carrier 1",2e-37,"PIC2","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature",6e-47,"PHYPADRAFT_111736","hypothetical protein"]
["Contig6691",3.129053936679152,0.46361627160971586,73.55603502389728,0.5809567246677276,1E-56,"PHT3;1","phosphate transporter 3;1 \\\\ phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink).",6e-60,"AN2977.2","hypothetical protein","","","",2e-64,"mpc1b","mitochondrial phosphate carrier 1",2e-48,"PIC2","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature",1E-59,"PHYPADRAFT_145758","hypothetical protein"]
["TRINITY_DN14838_c0_g1_i1@@W-35D-3@@KO",0,0,1.713755032279235,0,2E-16,"PHT3;1","phosphate transporter 3;1 \\\\ phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink).",1e-12,"AN2977.2","hypothetical protein","","","",1e-18,"mpc1b","mitochondrial phosphate carrier 1",2e-11,"PIC2","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature",2E-14,"PHYPADRAFT_111736","hypothetical protein"]
["Contig13689",30.478462108128227,33.50188546462621,87.01789329617245,156.30260267984087,1e-76,"PHT3;1","phosphate transporter 3;1 \\\\ phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink).",2e-69,"AN2977.2","hypothetical protein","","","",7e-85,"mpc1b","mitochondrial phosphate carrier 1",5e-57,"PIC2","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature",3e-81,"PHYPADRAFT_145758","hypothetical protein"]
["Contig12833",19.423183178714382,6.256919760590642,18.709792380481563,12.93737097579759,6E-37,"PHT3;2","phosphate transporter 3;2 \\\\ phosphate transporter 3;2 (PHT3;2); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast, membrane; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;1 (TAIR:AT5G14040.1); Has 16855 Blast hits to 11571 proteins in 428 species: Archae - 0; Bacteria - 0; Metazoa - 7278; Fungi - 4810; Plants - 3237; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).",4E-52,"AN0870.2","hypothetical protein","","","",6E-34,"mpc1b","mitochondrial phosphate carrier 1",3e-50,"MIR1","Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2p under normal conditions; phosphorylated",5e-39,"PHYPADRAFT_111736","hypothetical protein"]
["Contig9332",1.6868693248215798,1.6042702225871968,0.8892876146266502,0.2811619804408291,1e-12,"PHT3;2","phosphate transporter 3;2 \\\\ phosphate transporter 3;2 (PHT3;2); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast, membrane; EXPRESSED IN: stem, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;1 (TAIR:AT5G14040.1); Has 16855 Blast hits to 11571 proteins in 428 species: Archae - 0; Bacteria - 0; Metazoa - 7278; Fungi - 4810; Plants - 3237; Viruses - 0; Other Eukaryotes - 1530 (source: NCBI BLink).","","","","","","",2e-13,"mpc1b","mitochondrial phosphate carrier 1","","","",2e-11,"PHYPADRAFT_210342","hypothetical protein"]
["Contig1891",36.61404349754629,13.250197407799135,22.38451810061187,45.22779689006978,6e-29,"QC","glutaminyl cyclase \\\\ This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. \\\\ glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",2e-36,"chlredraft_186160","hypothetical protein","","","",7e-37,"PHYPADRAFT_181594","hypothetical protein"]
["Contig15040",19.801563923028077,3.151792836918441,4.5425083412525735,8.78281752381823,"","","",3e-14,"AN8959.2","hypothetical protein",1e-11,"ytab","hypothetical protein",3e-14,"chlredraft_143874","TspO/MBR-related protein","","","",4e-28,"PHYPADRAFT_27510","hypothetical protein"]
["Contig2364@@WT",44.63547451333238,27.315456851419686,20.08897933706134,10.07053465868597,"","","","","","","","","",3e-12,"chlredraft_143874","TspO/MBR-related protein","","","",3e-22,"PHYPADRAFT_109042","hypothetical protein"]
["TRINITY_DN31399_c1_g1_i2@@W-25D-2@@KO",18.157410196062774,8.518799243970774,6.978341785578033,3.0606334188684823,"","","","","","","","","",6e-13,"chlredraft_143874","TspO/MBR-related protein","","","",1e-21,"PHYPADRAFT_109042","hypothetical protein"]
["Contig16957",2.492359823085294,1.3336301098202903,2.1523390870031207,1.0919573546044195,3e-90,"nPAP","nuclear poly(a) polymerase \\\\ Encodes a nuclear poly(A) polymerase. Located in the nucleus. \\\\ nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).",3e-80,"AN0874.2","hypothetical protein","","","",1E-73,"pap1","poly(a) polymerase",6e-80,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",2e-93,"PHYPADRAFT_30787","hypothetical protein"]
["Contig11571@@KO",0.4740859494677716,0.03699461715105975,4.087739275986251,0.08428707072296189,2e-40,"PAPS1","poly(A) polymerase 1 \\\\ Encodes a poly(A) polymerase. Located in the nucleus. \\\\ poly(A) polymerase 1 (PAPS1); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9); Has 815 Blast hits to 805 proteins in 221 species: Archae - 0; Bacteria - 17; Metazoa - 265; Fungi - 212; Plants - 181; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).",6e-30,"AN0874.2","hypothetical protein","","","",7e-26,"pap1","poly(a) polymerase",5e-31,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",5e-41,"PHYPADRAFT_111923","hypothetical protein"]
["TRINITY_DN30741_c0_g1_i1@@W-35D-3@@KO",0.09151310619082223,0,2.2513907667026336,0.06101244665321053,2e-75,"nPAP","nuclear poly(a) polymerase \\\\ Encodes a nuclear poly(A) polymerase. Located in the nucleus. \\\\ nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).",2e-60,"AN0874.2","hypothetical protein","","","",4e-57,"pap1","poly(a) polymerase",4e-66,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",8e-77,"PHYPADRAFT_111923","hypothetical protein"]
["Contig15476@@KO",0.7210983564219329,0.6138531935141048,5.252985614689494,0.699289403698522,6e-39,"nPAP","nuclear poly(a) polymerase \\\\ Encodes a nuclear poly(A) polymerase. Located in the nucleus. \\\\ nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).",2e-22,"AN0874.2","hypothetical protein","","","",9e-28,"pap1","poly(a) polymerase",2e-28,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",1e-33,"PHYPADRAFT_111923","hypothetical protein"]
["Contig3276",37.43811803364672,24.362140496920173,24.033256008552865,20.002847197476772,7e-100,"nPAP","nuclear poly(a) polymerase \\\\ Encodes a nuclear poly(A) polymerase. Located in the nucleus. \\\\ nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).",7e-83,"AN0874.2","hypothetical protein","","","",1E-73,"pap1","poly(a) polymerase",2E-85,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",2e-101,"PHYPADRAFT_30787","hypothetical protein"]
["Contig5952@@KO",5.416431972669291,2.3512406675411945,3.176921110034196,3.0611277870511455,2E-90,"nPAP","nuclear poly(a) polymerase \\\\ Encodes a nuclear poly(A) polymerase. Located in the nucleus. \\\\ nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).",2e-80,"AN0874.2","hypothetical protein","","","",1E-73,"pap1","poly(a) polymerase",3e-80,"PAP1","Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping",3e-93,"PHYPADRAFT_30787","hypothetical protein"]
["Contig5911",679.7180709863261,1061.5621352740811,720.1311272787553,1076.136832104457,2e-37,"ELF5A-1","eukaryotic elongation factor 5A-1 \\\\ Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. \\\\ eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264; Bacteria - 0; Metazoa - 366; Fungi - 246; Plants - 261; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).",8e-33,"AN4015.2","hypothetical protein","","","",4e-32,"eif5a","eukaryotic initiation factor",6e-35,"HYP2","Translation elongation factor eIF-5A; may function in translation initiation; structural homolog of bacterial EF-P; undergoes an essential hypusination modification; HYP2 has a paralog, ANB1, that arose from the whole genome duplication",4E-35,"PHYPADRAFT_87545","hypothetical protein"]
["TRINITY_DN50404_c0_g1_i1@@W-35D-3@@KO",0.08701095538424564,0.10184662673514641,0.8562518297459413,0,3e-16,"AT5G10370","helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related \\\\ helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT4G01020.1); Has 13101 Blast hits to 12313 proteins in 1655 species: Archae - 17; Bacteria - 3301; Metazoa - 3520; Fungi - 1983; Plants - 1450; Viruses - 719; Other Eukaryotes - 2111 (source: NCBI BLink).",3e-14,"AN6585.2","hypothetical protein","","","",2e-22,"chlredraft_116281","hypothetical protein",3e-14,"PRP2","Dubious open reading frame unlikely to encode a functional protein; identified by homology",5E-15,"PHYPADRAFT_175128","hypothetical protein"]
["Contig10909@@KO",36.69529294461066,15.329618006814979,37.24432841262766,27.84187731412036,0,"CDC48","cell division cycle 48 \\\\ Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation. \\\\ cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink).",0,"AN7254.2","similar to Cdc48p",1e-48,"ftsh","ATP-dependent zinc metalloprotease FtsH",0,"cdc48","flagellar associated protein",0,"CDC48","AAA ATPase involved in multiple processes; subunit of polyubiquitin-selective segregase complex involved in ERAD, cell wall integrity during heat stress, mitotic spindle disassembly; subunit of complex involved in mitochondria-associated degradation; role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing; roles in macroautophagy, PMN, RAD, ribophagy, and homotypic ER membrane fusion; functional ortholog of human p97/VCP",0,"PHYPADRAFT_144596","hypothetical protein"]
["Contig13393@@KO",0,0,0.9707761211462237,0,5e-22,"EIF3A","eukaryotic translation initiation factor 3A \\\\ Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. \\\\ eukaryotic translation initiation factor 3A (EIF3A); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23330.1); Has 151795 Blast hits to 76455 proteins in 3156 species: Archae - 1231; Bacteria - 22686; Metazoa - 70860; Fungi - 11049; Plants - 6472; Viruses - 438; Other Eukaryotes - 39059 (source: NCBI BLink).",2E-19,"AN2743.2","hypothetical protein","","","",3e-21,"eif3a","eukaryotic initiation factor",8E-14,"RPG1","eIF3a subunit of the core complex of translation initiation factor 3 (eIF3), essential for translation; part of a Prt1p-Rpg1p-Nip1p subcomplex that stimulates binding of mRNA and tRNA(i)Met to ribosomes; involved in translation reinitiation",3e-27,"PHYPADRAFT_113179","hypothetical protein"]
["Contig11369",3.487096045729042,1.3047923380277135,2.2502026976964578,2.7441112550148463,"","","","","","","","","",8e-16,"chlredraft_121658","hypothetical protein","","","","","",""]
["Contig563",19.545459806887607,18.656148230946744,13.498865821799022,22.87753995181981,4E-35,"MFDX1","mitochondrial ferredoxin 1 \\\\ mitochondrial ferredoxin 1 (MFDX1); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: pollen tube development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Adrenodoxin (InterPro:IPR001055), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Adrenodoxin, iron-sulphur binding site (InterPro:IPR018298); BEST Arabidopsis thaliana protein match is: MITOCHONDRIAL  FERREDOXIN 2 (TAIR:AT4G21090.3); Has 4425 Blast hits to 4425 proteins in 1188 species: Archae - 2; Bacteria - 2167; Metazoa - 246; Fungi - 135; Plants - 85; Viruses - 0; Other Eukaryotes - 1790 (source: NCBI BLink).","","","","","","",3e-36,"mfdx1","ferredoxin, adrenodoxin-like protein",3e-26,"YAH1","Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin",1e-32,"PHYPADRAFT_80891","hypothetical protein"]
["Contig11384",17.69069351734631,13.149974707269186,22.726705674390164,28.432347595643527,0,"RLI2","RNAse l inhibitor protein 2 \\\\ member of RLI subfamily \\\\ RNAse l inhibitor protein 2 (RLI2); FUNCTIONS IN: transporter activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S binding domain (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 1 (TAIR:AT3G13640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",0,"AN1256.2","hypothetical protein",3e-64,"dnaj","chaperone protein DnaJ",5e-156,"chlredraft_119356","hypothetical protein",0,"RLI1","Essential iron-sulfur protein required for ribosome biogenesis and translation initiation and termination; facilitates binding of a multifactor complex (MFC) of initiation factors to the small ribosomal subunit; predicted ABC family ATPase; forms a complex with Lto1p and Yae1p that may be involved in protection of the ribosome from damage due to reactive oxygen species",3e-86,"PHYPADRAFT_186467","hypothetical protein"]
["Contig21450@@KO",0.6523753247589004,0.040189873307530044,13.177593531953782,0,2e-82,"AT5G55070","Dihydrolipoamide succinyltransferase \\\\ Dihydrolipoamide succinyltransferase; FUNCTIONS IN: zinc ion binding, acyltransferase activity; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: cytosolic ribosome, mitochondrion; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide succinyltransferase (InterPro:IPR006255), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide succinyltransferase (TAIR:AT4G26910.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-73,"AN3466.2","hypothetical protein",6E-65,"odhb","dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex",2e-82,"ogd2","dihydrolipoamide succinyltransferase, oxoglutarate dehydrogenase E2 component",9e-79,"KGD2","Dihydrolipoyl transsuccinylase, component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated",3e-82,"PHYPADRAFT_218185","hypothetical protein"]
["Contig12396",0.42151221577192927,0.7894104297914851,0.47405604359475123,0.8992807312154144,2e-44,"PGY2","Ribosomal protein L6 family \\\\ Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and  adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. \\\\ PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).",6e-38,"AN9465.2","hypothetical protein","","","",1e-44,"rpl9","ribosomal protein L9",3e-36,"RPL9B","Ribosomal 60S subunit protein L9B; nearly identical to paralog Rpl9Ap; homologous to mammalian ribosomal protein L9 and bacterial L6",2E-45,"PHYPADRAFT_182540","hypothetical protein"]
["TRINITY_DN13086_c0_g1_i1@@W-35D-3@@KO",0,0,0.5774047545206212,0,2e-23,"emb1507","U5 small nuclear ribonucleoprotein helicase, putative \\\\ embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778; Bacteria - 7152; Metazoa - 2915; Fungi - 2450; Plants - 1068; Viruses - 118; Other Eukaryotes - 4346 (source: NCBI BLink).",1E-25,"AN1478.2","hypothetical protein","","","",9e-24,"chlredraft_123427","RNA helicase, activating signal cointegrator 1",2E-16,"SLH1","Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses",4e-21,"PHYPADRAFT_205535","hypothetical protein"]
["TRINITY_DN8540_c0_g1_i1@@W-35D-3@@KO",0.12487451233819692,0,1.4629251105169438,0,6e-58,"3BETAHSD/D2","3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 \\\\ Encodes an enzyme with 3&#946;-hydroxysteroid dehydrogenase/C4-decarboxylase activity <i>in vitro</i>. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the <i>Arabidopsis</i> gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound. \\\\ 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (3BETAHSD/D2); FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), NAD(P)-binding domain (InterPro:IPR016040), 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225); BEST Arabidopsis thaliana protein match is: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (TAIR:AT1G47290.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",1e-40,"AN8440.2","hypothetical protein",1e-12,"ytcb","UDP-glucose epimerase YtcB",1e-47,"bhsd1","steroid dehydrogenase",9e-53,"ERG26","C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis",2e-54,"PHYPADRAFT_145942","hypothetical protein"]
["TRINITY_DN35539_c1_g1_i1@@W-35D-3@@KO",0,0,2.3827765932725975,0,1e-82,"AT4G02660","Beige/BEACH domain ;WD domain, G-beta repeat protein \\\\ Beige/BEACH domain ;WD domain, G-beta repeat protein; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT1G03060.1); Has 7684 Blast hits to 5756 proteins in 390 species: Archae - 8; Bacteria - 1306; Metazoa - 3489; Fungi - 1068; Plants - 719; Viruses - 0; Other Eukaryotes - 1094 (source: NCBI BLink).",2e-61,"AN0239.2","hypothetical protein","","","",7e-14,"chlredraft_167021","hypothetical protein",8e-48,"BPH1","Protein homologous to Chediak-Higashi syndrome and Beige proteins; both of which are implicated in disease syndromes in human and mouse, respectively, due to defective lysosomal trafficking; mutant phenotype and genetic interactions suggest a role in protein sorting",6e-83,"PHYPADRAFT_128823","hypothetical protein"]
["Contig608",19.003233650480087,8.68227497830737,12.532426242406352,10.661966973253818,1e-19,"SIG2","RNApolymerase sigma subunit 2 \\\\ Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. \\\\ RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink).","","","",2e-18,"siga","RNA polymerase sigma factor RpoD",4E-14,"rpod","chloroplast RNA polymerase sigma factor, c","","","",5e-25,"PpSig2","plastid sigma facor SIG2"]
["Contig2725",4.958786918294025,3.30898056359388,4.918901840583292,3.0279792107475165,"","","","","","",2E-12,"yxep","hydrolase YxeP",4e-15,"chlredraft_123463","hypothetical protein","","","","","",""]
["Contig6436",1107.5740894941077,1442.6555215894623,918.0757050345402,1395.5846498613298,2e-65,"AT5G59240","Ribosomal protein S8e family protein \\\\ Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).",2e-60,"AN0465.2","hypothetical protein","","","",1e-60,"rps8","30S ribosomal protein S8",1e-60,"RPS8B","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the essential gene AAR2/YBL074C",2e-63,"PHYPADRAFT_191463","hypothetical protein"]
["Contig7386",20.25102838969493,31.35303000092872,48.90256555514208,109.7931010141613,4e-45,"SnRK1.3","SNF1-related protein kinase 1.3 \\\\ SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink).",3e-45,"AN2412.2","KCC1_EMENI Calcium/calmodulin-dependent protein kinase (CMPK)",3e-25,"prkc","serine/threonine protein kinase",5e-45,"chlredraft_182699","hypothetical protein",2e-42,"RAD53","Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p; also interacts with ARS1 and plays a role in initiation of DNA replication",5e-44,"PHYPADRAFT_90621","hypothetical protein"]
["Contig1757",1.6468011698376943,4.698492124584355,2.89388131125537,9.195198878146211,5e-14,"B73","molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) \\\\ Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. \\\\ B73; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, conserved site (InterPro:IPR008284), Molybdenum cofactor synthesis (InterPro:IPR020817), MoeA, N-terminal and linker domain (InterPro:IPR005110), MoeA, C-terminal, domain IV (InterPro:IPR005111), Molybdopterin binding (InterPro:IPR001453); Has 13106 Blast hits to 12710 proteins in 1951 species: Archae - 648; Bacteria - 8919; Metazoa - 385; Fungi - 192; Plants - 74; Viruses - 0; Other Eukaryotes - 2888 (source: NCBI BLink).","","","","","","",2e-30,"cnx1g","molybdopterin biosynthesis protein","","","",3e-13,"PHYPADRAFT_136145","hypothetical protein"]
["TRINITY_DN37441_c0_g1_i11@@W-35D-3@@KO",0.01720867981785319,0,0.3144998494142303,0,7e-20,"AT5G60070","ankyrin repeat family protein \\\\ ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G07710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2E-55,"AN1130.2","hypothetical protein","","","",5E-56,"ank24","flagellar associated protein",2e-13,"AKR1","Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication",3e-15,"PHYPADRAFT_209624","hypothetical protein"]
["Contig530",3.112812780224437,1.5477061446134392,2.323567766125577,2.7916006424188606,"","","","","","","","","",7e-13,"ank25","hypothetical protein","","","","","",""]
["TRINITY_DN34618_c0_g1_i1@@W-35D-3@@KO",0.042607134494940344,0,4.103008662469911,0,3e-64,"AT4G23460","Adaptin family protein \\\\ Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G11380.1); Has 3513 Blast hits to 3431 proteins in 288 species: Archae - 10; Bacteria - 22; Metazoa - 1477; Fungi - 873; Plants - 441; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).",3e-91,"AN0165.2","hypothetical protein","","","",1e-32,"ap4b4","beta-4-adaptin",4e-54,"APL6","Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools",1e-98,"PHYPADRAFT_183108","hypothetical protein"]
["Contig10003",2.7195474339762127,2.228267829280672,3.9506323214637904,0,"","","","","","","","","",2e-11,"chlredraft_155068","hypothetical protein","","","","","",""]
["Contig2834",4.7290675091325785,1.2443900027994792,4.586752912496931,2.3952289019026463,1e-24,"AT5G35690","CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-11,"AN1049.2","hypothetical protein","","","",5e-26,"chlredraft_189298","hypothetical protein","","","",5e-23,"PHYPADRAFT_109461","hypothetical protein"]
["Contig4284@@WT",9.928755421827775,8.523820831011983,4.621866585882059,9.00875624014516,0,"CLA1","Deoxyxylulose-5-phosphate synthase \\\\ Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis \\\\ CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink).","","","",3e-136,"dxs","1-deoxy-D-xylulose-5-phosphate synthase",0,"dxs1","1-deoxy-D-xylulose 5-phosphate synthase","","","",0,"DXS1","1-deoxyxylulose 5-phosphate synthase"]
["Contig2533",93.50472037029093,70.33758638465216,48.3942018684612,100.69689290063168,1e-112,"AT5G11880","Pyridoxal-dependent decarboxylase family protein \\\\ Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT3G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","",5e-41,"lysa","diaminopimelate decarboxylase",4e-113,"dpd1","diaminopimelate decarboxylase","","","",2e-111,"PHYPADRAFT_61606","hypothetical protein"]
["TRINITY_DN31172_c0_g1_i1@@W-35D-5@@WT",0.1051734363625105,0.12310587406335659,0.14785485825710082,0.42071932267420176,4e-26,"SAP18","SIN3 associated polypeptide P18 \\\\ Involved in the regulation of salt  stress. Expression of  AtSAP18 is induced by NaCl, cold, drought,  ABA, and ethylene treatment. AtSAP18 and HDA19 associate with  ERF3 and ERF4 both in vitro and in vivo. \\\\ SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250); Has 294 Blast hits to 294 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 52; Plants - 40; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).","","","","","","",2e-24,"chlredraft_104302","Sin3 complex component","","","",1E-26,"HCP1501","Sin3 complex component"]
["Contig13580@@KO",0.6657842117493623,0,9.359723677632605,0,5e-43,"SKP1","S phase kinase-associated protein 1 \\\\ SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which  provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene  to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. \\\\ S phase kinase-associated protein 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (TAIR:AT5G42190.1); Has 1455 Blast hits to 1451 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 179; Plants - 538; Viruses - 11; Other Eukaryotes - 175 (source: NCBI BLink).",1e-44,"AN2302.2","similar to sconCp","","","",4e-46,"skp1","E3 ubiquitin ligase",2E-35,"SKP1","Evolutionarily conserved kinetochore protein; part of multiple protein complexes, including the SCF ubiquitin ligase complex, the CBF3 complex that binds centromeric DNA, and the RAVE complex that regulates assembly of the V-ATPase; protein abundance increases in response to DNA replication stress",2E-45,"PHYPADRAFT_159093","hypothetical protein"]
["Contig13702",1.476221940446941,1.118067778066397,2.319454570013197,2.778939654377092,2e-23,"MAP2A","methionine aminopeptidase 2A \\\\ Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci. \\\\ methionine aminopeptidase 2A (MAP2A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 2 (InterPro:IPR002468), Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site (InterPro:IPR018349), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2B (TAIR:AT3G59990.4); Has 6503 Blast hits to 6494 proteins in 2220 species: Archae - 231; Bacteria - 4255; Metazoa - 425; Fungi - 336; Plants - 181; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).",4e-23,"AN4404.2","hypothetical protein","","","",8e-24,"map2","methionine aminopeptidase",1e-16,"MAP2","Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p",7e-25,"PHYPADRAFT_203982","hypothetical protein"]
["Contig5833",6.342317779963187,6.502515399243964,5.987489901043963,6.481594693335459,1E-61,"AT5G41770","crooked neck protein, putative / cell cycle protein, putative \\\\ crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 5514 Blast hits to 2293 proteins in 250 species: Archae - 19; Bacteria - 57; Metazoa - 1995; Fungi - 1739; Plants - 986; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).",1E-35,"AN1259.2","hypothetical protein","","","",3e-50,"chlredraft_116356","hypothetical protein",9e-33,"CLF1","Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; homolog of Drosophila crooked neck protein; interacts with U1 snRNP proteins",6e-61,"PHYPADRAFT_158739","hypothetical protein"]
["Contig16858@@WT",1.412982253739815,2.4808509838419903,1.589118302658927,2.1353029971087745,9e-40,"FER4","ferritin 4 \\\\ Encodes FERRITIN 4, AtFER4.  Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life.  Function as the main iron store in mammals.  Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress. \\\\ ferritin 4 (FER4); FUNCTIONS IN: oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin/Dps protein (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ferritin 3 (TAIR:AT3G56090.1); Has 4634 Blast hits to 4632 proteins in 1342 species: Archae - 173; Bacteria - 2136; Metazoa - 1697; Fungi - 13; Plants - 350; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).","","","","","","",7e-35,"fer1","pre-apoferritin","","","",3e-39,"PHYPADRAFT_210187","ferritin, chloroplast precursor"]
["TRINITY_DN21884_c0_g1_i1@@W-35D-3@@KO",0.09440404309663253,0,2.256155614886131,0,3E-32,"AT1G68310","Protein of unknown function (DUF59) \\\\ Encodes a protein that has been shown to specifically interact with a sequence motif, PIEPPPHH, in the cytoplasmic tail of a membrane protein that directs the protein from the ER to vacuoles where it is internalized. \\\\ Protein of unknown function (DUF59); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF59 (InterPro:IPR002744); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF59) (TAIR:AT3G50845.1); Has 558 Blast hits to 558 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 136; Plants - 85; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).",3e-20,"AN1407.2","hypothetical protein","","","",5e-32,"chlredraft_120412","hypothetical protein",1E-25,"CIA2","Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human FAM96B",6e-30,"PHYPADRAFT_229872","hypothetical protein"]
["TRINITY_DN48638_c0_g1_i1@@W-35D-3@@KO",0,0,0.3831207647919845,0,"","","","","","","","","",5e-13,"chlredraft_115084","hypothetical protein","","","","","",""]
["Contig16007@@KO",0.1489053463276781,0,3.7680124702221978,0,"","","","","","","","","",4E-14,"chlredraft_118118","hypothetical protein","","","","","",""]
["Contig19160@@KO",0.2828759724598799,0,7.013497395117836,0,4e-126,"AT5G11170","DEAD/DEAH box RNA helicase family protein  \\\\ DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus; EXPRESSED IN: guard cell, root, cultured cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein  (TAIR:AT5G11200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",4e-115,"AN8722.2","hypothetical protein",3E-52,"csha","ATP-dependent RNA helicase",7e-118,"uap56","subunit of exon junction complex",2E-119,"SUB2","Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress",6e-126,"PHYPADRAFT_188774","hypothetical protein"]
["Contig15892@@KO",0,0.09272325432194317,0.8909133689495508,0,3e-40,"AT1G08110","lactoylglutathione lyase family protein / glyoxalase I family protein \\\\ lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 4789 Blast hits to 4500 proteins in 1507 species: Archae - 34; Bacteria - 2875; Metazoa - 164; Fungi - 363; Plants - 266; Viruses - 0; Other Eukaryotes - 1087 (source: NCBI BLink).",2e-34,"AN4174.2","hypothetical protein","","","",1E-41,"chlredraft_106176","lactoylglutathione lyase",2e-34,"GLO1","Monomeric glyoxalase I, catalyzes the detoxification of methylglyoxal (a by-product of glycolysis) via condensation with glutathione to produce S-D-lactoylglutathione; expression regulated by methylglyoxal levels and osmotic stress",3e-38,"PHYPADRAFT_107013","hypothetical protein"]
["Contig10941@@WT",21.074844402749605,2.612828914968938,32.765532679823586,14.561421567330605,9e-12,"AT4G23800","HMG (high mobility group) box protein \\\\ HMG (high mobility group) box protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein (TAIR:AT4G11080.1); Has 73209 Blast hits to 39847 proteins in 2254 species: Archae - 389; Bacteria - 7210; Metazoa - 37524; Fungi - 4636; Plants - 3006; Viruses - 229; Other Eukaryotes - 20215 (source: NCBI BLink).",3e-12,"AN2885.2","hypothetical protein","","","",2E-14,"chlredraft_142283","high mobility group protein",7e-13,"NHP6B","High-mobility group (HMG) protein, binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication",3E-11,"PHYPADRAFT_169862","hypothetical protein"]
["Contig17309",66.00637736505242,67.64609710972924,65.0287635614895,81.71133288499175,0,"AT2G07698","ATPase, F1 complex, alpha subunit protein \\\\ ATPase, F1 complex, alpha subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) RNA binding, zinc ion binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, alpha subunit (InterPro:IPR005294), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase subunit 1 (TAIR:ATMG01190.1); Has 42544 Blast hits to 42509 proteins in 10112 species: Archae - 769; Bacteria - 22602; Metazoa - 1520; Fungi - 703; Plants - 8267; Viruses - 0; Other Eukaryotes - 8683 (source: NCBI BLink).",0,"AN1523.2","ATPA_NEUCR ATP synthase alpha chain, mitochondrial precursor",2E-171,"atpa","ATP synthase subunit alpha",0,"atp1a","mitochondrial F1F0 ATP synthase, alpha subunit",0,"ATP1","Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; phosphorylated",1e-28,"PHYPADRAFT_173198","hypothetical protein"]
["Contig24515@@KO",0.20122967081124302,0,2.4517356681889533,0,"","","","","","","","","",3e-12,"yee2","integral membrane protein","","","","","",""]
["Contig15419@@KO",13.206558222050255,11.593741843403553,7.812726282121071,12.715161356353299,3e-14,"HCF107","high chlorophyll fluorescent 107 \\\\ It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. \\\\ high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast, plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1); Has 8355 Blast hits to 4834 proteins in 935 species: Archae - 387; Bacteria - 2714; Metazoa - 1907; Fungi - 1281; Plants - 751; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).","","","","","","",5e-14,"mbb1","PsbB mRNA maturation factor","","","",2e-20,"PHYPADRAFT_123190","hypothetical protein"]
["Contig17529",0,0.39748918584720155,0.6683595787045121,0.36224944815417165,1e-37,"PAB6","poly(A) binding protein 6 \\\\ polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins. \\\\ poly(A) binding protein 6 (PAB6); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 47895 Blast hits to 20906 proteins in 826 species: Archae - 26; Bacteria - 3385; Metazoa - 25529; Fungi - 5704; Plants - 8252; Viruses - 0; Other Eukaryotes - 4999 (source: NCBI BLink).",1e-40,"AN4000.2","hypothetical protein","","","",2e-36,"rb47","polyadenylate-binding protein RB47",5e-34,"PAB1","Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G",4e-38,"PHYPADRAFT_124737","hypothetical protein"]
["Contig6109@@KO",6.221159008608729,2.1012414047271206,5.700016007037318,5.654067011672058,2e-18,"AT5G51030","NAD(P)-binding Rossmann-fold superfamily protein \\\\ NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G61830.1); Has 71841 Blast hits to 71789 proteins in 3167 species: Archae - 666; Bacteria - 49161; Metazoa - 4545; Fungi - 3057; Plants - 2484; Viruses - 2; Other Eukaryotes - 11926 (source: NCBI BLink).","","","","","","",1e-17,"chlredraft_159999","short chain dehydrogenase/reductase","","","",1e-16,"PHYPADRAFT_128001","hypothetical protein"]
["Contig865",4.48414220335029,1.8745371742276686,3.216272523860905,6.345294451933895,2e-22,"AT4G34360","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \\\\ S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G60910.1); Has 2390 Blast hits to 2390 proteins in 771 species: Archae - 92; Bacteria - 1226; Metazoa - 381; Fungi - 88; Plants - 206; Viruses - 0; Other Eukaryotes - 397 (source: NCBI BLink).","","","","","","",1E-14,"chlredraft_169302","hypothetical protein","","","",9e-25,"PHYPADRAFT_180315","hypothetical protein"]
["TRINITY_DN6370_c0_g1_i1@@W-35D-3@@KO",0.2541434356677673,0,0.5359196621870281,0,2E-19,"AVP1","Inorganic H pyrophosphatase family protein \\\\ Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. \\\\ AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink).","","","","","","",4e-23,"chlredraft_137778","inorganic pyrophosphatase","","","",1e-20,"PHYPADRAFT_227756","hypothetical protein"]
["Contig13007",188.57611055309692,175.08267911841028,297.03700632936807,252.45920365798048,3e-123,"LACS6","long-chain acyl-CoA synthetase 6 \\\\ encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes \\\\ long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 7 (TAIR:AT5G27600.1); Has 54528 Blast hits to 52136 proteins in 3333 species: Archae - 925; Bacteria - 35165; Metazoa - 2570; Fungi - 2253; Plants - 2087; Viruses - 1; Other Eukaryotes - 11527 (source: NCBI BLink).",3e-96,"AN8280.2","hypothetical protein",9e-28,"yhfl","long-chain-fatty-acid--CoA ligase",1e-116,"chlredraft_123147","hypothetical protein",1E-78,"FAA2","Medium chain fatty acyl-CoA synthetase, activates imported fatty acids; accepts a wide range of fatty acid chain lengths with a preference for medium chains, C9:0-C13:0; localized to the peroxisome",2e-122,"PHYPADRAFT_175357","hypothetical protein"]
["Contig23064@@KO",0,0,1.627823341345818,0.024124754480413516,"","","","","","","","","",8e-18,"chlredraft_170317","hypothetical protein","","","","","",""]
["Contig16427",0.31582693718188287,0.591482450310238,0.6215938938971993,0.42112818498972576,7e-40,"AT5G50260","Cysteine proteinases superfamily protein \\\\ Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G48340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",3e-35,"cep1","cysteine endopeptidase","","","",6e-36,"PHYPADRAFT_224348","hypothetical protein"]
["Contig20179@@KO",0.7684640327356889,0.14507900490304038,44.95532040416701,0.1652711298071807,"","","",1e-21,"AN5558.2","similar to alkaline protease",2E-14,"apre","subtilisin E",2e-26,"sub1","secreted protease and protease inhibitor",3E-23,"PRB1","Vacuolar proteinase B (yscB); serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation; activity inhibited by Pbi2p; protein abundance increases in response to DNA replication stress",4e-17,"PHYPADRAFT_52500","hypothetical protein"]
["TRINITY_DN54062_c0_g1_i1@@W-35D-3@@KO",0,0,0.7217559431507765,0,4e-12,"AUR3","ataurora3 \\\\ Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells. \\\\ ataurora3 (AUR3); CONTAINS InterPro DOMAIN/s: Spindle assembly checkpoint kinase (InterPro:IPR020663), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora1 (TAIR:AT4G32830.1); Has 132422 Blast hits to 130217 proteins in 4585 species: Archae - 167; Bacteria - 15261; Metazoa - 49222; Fungi - 13102; Plants - 32389; Viruses - 552; Other Eukaryotes - 21729 (source: NCBI BLink).","","","","","","",1e-11,"chlredraft_115581","hypothetical protein",2e-15,"CDC5","Polo-like kinase with multiple functions in mitosis and cytokinesis through substrate phosphorylation, also functions in adaptation to DNA damage during meiosis; has similarity to Xenopus Plx1 and S. pombe Plo1p; possible Cdc28p substrate",6e-12,"PHYPADRAFT_191512","hypothetical protein"]
["Contig11181",3.249859183601574,2.6627800559904027,2.0178491780637833,2.816715865303781,"","","","","","",1e-12,"glpt","glycerol-3-phosphate transporter",7e-28,"hpt2a","hexose-phosphate transporter, major isoform","","","","","",""]
["TRINITY_DN24297_c0_g1_i1@@W-35D-3@@KO",0.42001411096627783,0,3.936426597862716,0,7e-50,"UBC7","ubiquitin carrier protein 7 \\\\ ubiquitin conjugating enzyme E2 \\\\ ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-57,"AN8258.2","hypothetical protein","","","",6E-52,"chlredraft_190824","hypothetical protein",6e-50,"UBC7","Ubiquitin conjugating enzyme, involved in the ER-associated protein degradation pathway; requires Cue1p for recruitment to the ER membrane; proposed to be involved in chromatin assembly",1E-50,"PHYPADRAFT_212042","hypothetical protein"]
["Contig14003@@KO",0,0,3.7777489365535217,0,6E-52,"PEN2","PTEN 2 \\\\ PTEN 2 (PEN2); FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Phosphatase tensin type (InterPro:IPR014019), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: PTEN 3 (TAIR:AT3G50110.1); Has 4829 Blast hits to 1781 proteins in 265 species: Archae - 0; Bacteria - 174; Metazoa - 864; Fungi - 554; Plants - 143; Viruses - 4; Other Eukaryotes - 3090 (source: NCBI BLink).",2E-19,"AN6212.2","hypothetical protein","","","",4e-28,"ptn1","PTEN PI-3 phosphatase",1e-19,"TEP1","PTEN homolog with no demonstrated inositol lipid phosphatase activity; plays a role in normal sporulation; homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 and fission yeast ptn1",1E-46,"PHYPADRAFT_11763","hypothetical protein"]
["Contig24629@@KO",0.19991444420463358,0.11700027707982218,1.7565225375411055,0,9e-20,"PTP1","protein tyrosine phosphatase 1 \\\\ Encodes a protein with  tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. \\\\ protein tyrosine phosphatase 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 6497 Blast hits to 5202 proteins in 282 species: Archae - 2; Bacteria - 98; Metazoa - 5552; Fungi - 319; Plants - 71; Viruses - 173; Other Eukaryotes - 282 (source: NCBI BLink).",3e-15,"AN6982.2","hypothetical protein","","","",7e-21,"ptp3","protein tyrosine phosphatase 3",4E-14,"PTP1","Phosphotyrosine-specific protein phosphatase that dephosphorylates a broad range of substrates in vivo, including Fpr3p; localized to the cytoplasm and the mitochondria; proposed to be a negative regulator of filamentation",4e-22,"PHYPADRAFT_63870","hypothetical protein"]
["Contig24440@@KO",41.573861631096584,17.368107043752868,43.22421065305637,29.370132227523186,2E-159,"UBA1","ubiquitin-activating enzyme 1 \\\\ Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. \\\\ ubiquitin-activating enzyme 1 (UBA1); FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin activating enzyme activity; INVOLVED IN: response to cadmium ion, response to other organism, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme, E1, active site (InterPro:IPR018074), Ubiquitin-activating enzyme, E1 (InterPro:IPR018075), Ubiquitin-activating enzyme e1, C-terminal (InterPro:IPR018965), Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: ubiquitin activating enzyme 2 (TAIR:AT5G06460.1); Has 19490 Blast hits to 12603 proteins in 2346 species: Archae - 393; Bacteria - 11015; Metazoa - 2131; Fungi - 1366; Plants - 791; Viruses - 0; Other Eukaryotes - 3794 (source: NCBI BLink).",0,"AN2174.2","hypothetical protein",8E-14,"moeb","molybdopterin-synthase adenylyltransferase",6E-162,"uba1","ubiquitin-activating enzyme E1",4E-175,"UBA1","Ubiquitin activating enzyme (E1); involved in ubiquitin-mediated protein degradation and essential for viability; protein abundance increases in response to DNA replication stress",2e-164,"PHYPADRAFT_129081","hypothetical protein"]
["TRINITY_DN34428_c0_g1_i1@@W-25D-4@@WT",0,0.47401514125329824,0.3795401968967323,0,5e-17,"PPCK2","phosphoenolpyruvate carboxylase kinase 2 \\\\ Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. \\\\ phosphoenolpyruvate carboxylase kinase 2 (PPCK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 1 (TAIR:AT1G08650.1); Has 120539 Blast hits to 118552 proteins in 3545 species: Archae - 165; Bacteria - 14785; Metazoa - 43114; Fungi - 13204; Plants - 27915; Viruses - 518; Other Eukaryotes - 20838 (source: NCBI BLink).",4e-17,"AN4536.2","hypothetical protein",3e-12,"prkc","serine/threonine protein kinase",6e-15,"chlredraft_99140","hypothetical protein",6e-18,"PSK1","PAS domain-containing serine/threonine protein kinase; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status; PSK1 has a paralog, PSK2, that arose from the whole genome duplication",4e-18,"PHYPADRAFT_31557","hypothetical protein"]
["TRINITY_DN15367_c0_g2_i1@@W-35D-3@@KO",5.597443838079833,3.9115388262804305,7.281756746759736,5.792731856665873,6e-75,"AT3G61540","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: peptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 1602 Blast hits to 1599 proteins in 535 species: Archae - 0; Bacteria - 1162; Metazoa - 5; Fungi - 126; Plants - 75; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).",7e-47,"AN2092.2","hypothetical protein","","","",5e-72,"chlredraft_117386","hypothetical protein","","","",1e-77,"PHYPADRAFT_222694","hypothetical protein"]
["Contig15242@@WT",21.419638296280556,10.57714931048307,6.310265318145853,8.032852710613655,1e-138,"IMPA-1","importin alpha isoform 1 \\\\ Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. \\\\ importin alpha isoform 1 (IMPA-1); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4061 Blast hits to 2975 proteins in 282 species: Archae - 4; Bacteria - 22; Metazoa - 1539; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).",4e-121,"AN2142.2","similar to AF465210_1 karyopherin alpha","","","",3e-138,"ipa1","importin alpha",2E-107,"SRP1","Karyopherin alpha homolog, forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; may also play a role in regulation of protein degradation",4e-145,"PHYPADRAFT_222327","hypothetical protein"]
["Contig16673@@KO",0.138616301283923,0,3.2348334823799227,0.07393318871476695,4e-33,"NDT2","NAD+ transporter 2 \\\\ Encodes a mitochondrial-localized NAD+ transporter that transports NAD+ in a counter exchange mode with ADP and AMP in vitro. \\\\ NAD+ transporter 2 (NDT2); FUNCTIONS IN: binding, NAD transporter activity; INVOLVED IN: transport, NAD transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: NAD+ transporter 1 (TAIR:AT2G47490.1); Has 30606 Blast hits to 14728 proteins in 470 species: Archae - 0; Bacteria - 8; Metazoa - 12581; Fungi - 9084; Plants - 5612; Viruses - 5; Other Eukaryotes - 3316 (source: NCBI BLink).",3e-97,"AN8785.2","hypothetical protein","","","",2e-28,"mitc13","mitochondrial substrate carrier protein",2E-78,"AGC1","Mitochondrial amino acid transporter, acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis",3e-62,"PHYPADRAFT_52143","hypothetical protein"]
["TRINITY_DN35005_c0_g1_i1@@W-25D-4@@WT",0,0.2865515260683781,0,0.16321691237454908,7e-11,"DSPTP1","dual specificity protein phosphatase 1 \\\\ Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding. \\\\ dual specificity protein phosphatase 1 (DSPTP1); CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase (InterPro:IPR020417), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: MAPK phosphatase 2 (TAIR:AT3G06110.3); Has 4429 Blast hits to 4425 proteins in 398 species: Archae - 22; Bacteria - 149; Metazoa - 2258; Fungi - 464; Plants - 388; Viruses - 233; Other Eukaryotes - 915 (source: NCBI BLink).","","","","","","",1e-12,"mkp5","MAP kinase phosphatase 5","","","","","",""]
["Contig18802@@KO",0.03297675478033054,0,3.9405457657257768,0,7e-34,"SULTR3;1","sulfate transporter 3;1 \\\\ Encodes a sulfate transporter. \\\\ sulfate transporter 3;1 (SULTR3;1); FUNCTIONS IN: secondary active sulfate transmembrane transporter activity, transporter activity, sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 3;2 (TAIR:AT4G02700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",3e-29,"AN3157.2","hypothetical protein",2E-16,"yvdb","sulfate transporter YvdB",2e-36,"sultr2","sulfate transporter",3e-25,"SUL1","High affinity sulfate permease of the SulP anion transporter family; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates",3e-31,"PHYPADRAFT_180785","hypothetical protein"]
["TRINITY_DN26238_c0_g1_i1@@W-35D-3@@KO",0.06955289852544837,0,2.493359776643822,0,8e-34,"MCCA","methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) \\\\ MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. \\\\ MCCA; FUNCTIONS IN: cobalt ion binding, methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation domain (InterPro:IPR011764), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl Co-enzyme a carboxylase biotin carboxylase subunit (TAIR:AT5G35360.1); Has 35200 Blast hits to 30603 proteins in 3073 species: Archae - 603; Bacteria - 22615; Metazoa - 922; Fungi - 892; Plants - 784; Viruses - 0; Other Eukaryotes - 9384 (source: NCBI BLink).",9e-42,"AN5271.2","hypothetical protein",2e-39,"accc","acetyl-CoA carboxylase biotin carboxylase subunit",2e-34,"mcca","methylcrotonoyl-CoA carboxylase alpha subunit",1e-30,"dur1","",4e-34,"PHYPADRAFT_176782","hypothetical protein"]
["Contig9784",35.25686537924605,39.77596764135042,34.950412160139095,49.51844738585489,8e-56,"RPS15A","ribosomal protein S15A \\\\ Encodes cytoplasmic ribosomal protein S15a. \\\\ ribosomal protein S15A (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3677 Blast hits to 3677 proteins in 1417 species: Archae - 277; Bacteria - 1997; Metazoa - 434; Fungi - 223; Plants - 257; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).",1E-52,"AN0907.2","RS22_KLUMA 40S RIBOSOMAL PROTEIN S22 (S15A) (YS24)","","","",1E-54,"rps15a","ribosomal protein S15a",9e-56,"RPS22B","Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15A and bacterial S8; RPS22B has a paralog, RPS22A, that arose from the whole genome duplication",6e-55,"PHYPADRAFT_182983","hypothetical protein"]
["Contig4983",7.777440781268726,4.876886549432973,4.964781998691733,4.920720869226103,9e-95,"CDKC;1","cyclin-dependent kinase C;1 \\\\ Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes.  Also regulates plant growth and development. \\\\ cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-61,"AN8190.2","hypothetical protein",1E-14,"prkc","serine/threonine protein kinase",2e-81,"cdkc1","cyclin dependent kinase",7e-67,"CTK1","Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I); phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and ribosomal protein Rps2p to increase translational fidelity; similar to the Drosophila dCDK12 and human CDK12 and probably CDK13",7e-85,"PHYPADRAFT_170206","hypothetical protein"]
["Contig8189",11.952931788526286,2.412903469844144,30.12506574520699,22.65487062887526,8e-154,"GCN1","ABC transporter family protein \\\\ member of GCN subfamily \\\\ GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3e-178,"AN2210.2","hypothetical protein",5e-67,"ydif","ABC transporter ATP-binding protein",2E-180,"fap151","flagellar associated protein",2e-178,"ARB1","ATPase of the ATP-binding cassette (ABC) family involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p",3e-154,"ppabcf2","ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF2"]
["Contig17787@@KO",0.13443057636407754,0.052450486157293606,3.275741968252459,0.059750555305677744,6e-17,"AT4G09340","SPla/RYanodine receptor (SPRY) domain-containing protein \\\\ SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 1270 Blast hits to 1182 proteins in 217 species: Archae - 0; Bacteria - 1; Metazoa - 551; Fungi - 310; Plants - 183; Viruses - 1; Other Eukaryotes - 224 (source: NCBI BLink).",2e-22,"AN9099.2","hypothetical protein","","","",2e-18,"chlredraft_191305","hypothetical protein","","","",2E-19,"PHYPADRAFT_169418","hypothetical protein"]
["TRINITY_DN15058_c0_g1_i1@@W-35D-3@@KO",0,0,1.7518384774409959,0,3e-48,"AT1G22800","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \\\\ S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 2362 Blast hits to 2362 proteins in 955 species: Archae - 8; Bacteria - 1684; Metazoa - 119; Fungi - 106; Plants - 46; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).",2e-42,"AN4918.2","hypothetical protein","","","",6e-39,"chlredraft_113892","hypothetical protein","","","",2e-53,"PHYPADRAFT_143044","hypothetical protein"]
["Contig18740@@KO",0.8666291156270866,0,17.51340796055359,0,5e-21,"RUB1","related to ubiquitin 1 \\\\ Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation.  It has been shown to be conjugated to the cullin AtCUL1.  The RUB-conjugation pathway has been implicated in in auxin response. \\\\ related to ubiquitin 1 (RUB1); INVOLVED IN: protein modification process, response to auxin stimulus, protein neddylation, ethylene biosynthetic process, embryo development; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 7 (TAIR:AT2G35635.1); Has 16064 Blast hits to 7349 proteins in 721 species: Archae - 0; Bacteria - 36; Metazoa - 7330; Fungi - 1879; Plants - 3570; Viruses - 331; Other Eukaryotes - 2918 (source: NCBI BLink).",6e-22,"AN6179.2","similar to A Chain A, Structure Of Ubiquitin-Like Protein, Rub1","","","",2e-20,"ubq2","bi-ubiquitin",1e-15,"RPS31","Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B; homologous to mammalian ribosomal protein S27A, no bacterial homolog",1e-20,"PHYPADRAFT_216423","hypothetical protein"]
["Contig8648",19.259642754323185,16.2051303324341,14.608793098564485,16.238864744608122,5e-119,"CKA2","casein kinase II, alpha chain 2 \\\\ casein kinase II catalytic subunit alpha \\\\ casein kinase II, alpha chain 2 (CKA2); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase alpha 1 (TAIR:AT5G67380.1); Has 86321 Blast hits to 85419 proteins in 2558 species: Archae - 72; Bacteria - 9686; Metazoa - 32978; Fungi - 11348; Plants - 15028; Viruses - 319; Other Eukaryotes - 16890 (source: NCBI BLink).",5e-109,"AN1485.2","KC2A_NEUCR Casein kinase II, alpha chain (CK II alpha subunit)","","","",2e-108,"chlredraft_194436","casein kinase 2 alpha chain, CK2A",9e-92,"Z74969","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; null mutation is viable",5e-116,"PHYPADRAFT_145621","hypothetical protein"]
["Contig4073",95.0589653599195,50.31179418261081,109.24058588899923,70.19799673362569,2E-170,"SHD","Chaperone protein htpG family protein \\\\ encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat.  Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. \\\\ SHEPHERD (SHD); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: in 8 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Molecular chaperone, heat shock protein, endoplasmin (InterPro:IPR015566), ATPase-like, ATP-binding domain (InterPro:IPR003594), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: heat shock protein 90.1 (TAIR:AT5G52640.1); Has 10659 Blast hits to 10182 proteins in 2496 species: Archae - 7; Bacteria - 3605; Metazoa - 2791; Fungi - 470; Plants - 491; Viruses - 10; Other Eukaryotes - 3285 (source: NCBI BLink).",7e-84,"AN8269.2","HS90_PODAN HEAT SHOCK PROTEIN 90 HOMOLOG (SUPPRESSOR OF VEGETATIVE INCOMPATIBILITY MOD-E)",6e-47,"htpg","chaperone protein HtpG",1e-90,"hsp90b","heat shock protein 90B",9e-135,"HSC82","Cytoplasmic chaperone of the Hsp90 family; redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels than HSP82 and induced 2-3 fold by heat shock; contains two acid-rich unstructured regions that promote the solubility of chaperone-substrate complexes; HSC82 has a paralog, HSP82, that arose from the whole genome duplication",4e-100,"PHYPADRAFT_216220","hypothetical protein"]
["TRINITY_DN45896_c0_g1_i1@@W-35D-3@@KO",0,0,0.6280020783703664,0,"","","","","","","","","",5e-17,"pde2","3',5'-cyclic-nucleotide phosphodiesterase","","","","","",""]
["TRINITY_DN12307_c0_g1_i1@@W-35D-3@@KO",0.25340032620675046,0,1.6921167111645985,0,7e-27,"RABG3B","RAB GTPase homolog  G3B \\\\ GTP-binding protein Rab7 \\\\ RAB GTPase homolog  G3B (RABG3B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 25691 Blast hits to 25666 proteins in 724 species: Archae - 21; Bacteria - 135; Metazoa - 13533; Fungi - 3489; Plants - 2837; Viruses - 20; Other Eukaryotes - 5656 (source: NCBI BLink).",2e-22,"AN0089.2","RAB7_NEUCR Probable Ras-related protein Rab7","","","",6e-24,"rabg1","small rab-related GTPase",2e-24,"YPT7","Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7",2e-25,"RabG11","Rab7/RabG-family small GTPase"]
["TRINITY_DN18275_c0_g1_i1@@W-35D-5@@WT",9.558409363534043,7.873143645163034,6.469858013276405,8.780109786266184,1E-25,"AT1G76860","Small nuclear ribonucleoprotein family protein \\\\ Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).",5e-14,"AN0047.2","hypothetical protein","","","",2e-24,"smp8","Sm protein",1e-11,"LSM3","Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress",3E-24,"PHYPADRAFT_176333","hypothetical protein"]
["Contig12194@@KO",0,0,8.045536060631676,0,5e-16,"ATDAD1","Defender against death (DAD family) protein \\\\ Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation. \\\\ DEFENDER AGAINST APOPTOTIC DEATH 1 (ATDAD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT2G35520.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).","","","","","","",1e-18,"dad1","hypothetical protein",5e-13,"OST2","Dubious open reading frame, unlikely to encode a functional protein; extensively overlaps essential OST2 gene encoding a subunit of the ER lumen oligosaccharyltransferase complex",6e-17,"PHYPADRAFT_227891","hypothetical protein"]
["Contig17358@@KO",1.5437927565826643,0.24641110986608702,1.5783955070944269,0.32749110029484424,1e-15,"AT3G56840","FAD-dependent oxidoreductase family protein \\\\ FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 4748 Blast hits to 4741 proteins in 1463 species: Archae - 76; Bacteria - 3210; Metazoa - 112; Fungi - 136; Plants - 47; Viruses - 1; Other Eukaryotes - 1166 (source: NCBI BLink).",1e-11,"AN4014.2","hypothetical protein","","","",2e-18,"chlredraft_127631","hypothetical protein","","","",3E-49,"PHYPADRAFT_124552","hypothetical protein"]
["TRINITY_DN18628_c0_g1_i1@@W-35D-5@@WT",6.959661193932608,6.729558534692425,0.765706444716941,0.7262696687504376,7e-15,"AT3G52310","ABC-2 type transporter family protein \\\\ ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT5G06530.1); Has 399105 Blast hits to 362643 proteins in 4152 species: Archae - 6998; Bacteria - 314182; Metazoa - 9528; Fungi - 7070; Plants - 5758; Viruses - 7; Other Eukaryotes - 55562 (source: NCBI BLink).","","","","","","",6e-14,"chlredraft_147235","hypothetical protein","","","",2e-13,"ppabcg3","ATP-binding cassette transporter, subfamily G, member 3, group WBC protein PpABCG3"]
["TRINITY_DN27820_c0_g1_i2@@W-25D-2@@KO",11.985644184050082,4.593475029201774,11.86141887795984,6.759027910936987,2e-29,"AT2G24200","Cytosol aminopeptidase family protein \\\\ Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30920.1); Has 9835 Blast hits to 9833 proteins in 2023 species: Archae - 18; Bacteria - 5432; Metazoa - 659; Fungi - 36; Plants - 122; Viruses - 1; Other Eukaryotes - 3567 (source: NCBI BLink).","","","",4e-15,"yuie","cytosol aminopeptidase",5e-28,"chlredraft_82208","hypothetical protein","","","",3e-27,"PHYPADRAFT_120509","hypothetical protein"]
["Contig2734@@WT",2.66047236104364,4.717387159548782,3.1476456754794353,4.601228628849446,1E-42,"AT3G46960","RNA helicase, ATP-dependent, SK12/DOB1 protein \\\\ RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT1G59760.1); Has 10417 Blast hits to 7271 proteins in 1110 species: Archae - 777; Bacteria - 3025; Metazoa - 1455; Fungi - 1476; Plants - 602; Viruses - 48; Other Eukaryotes - 3034 (source: NCBI BLink).",8e-49,"AN6007.2","hypothetical protein","","","",2e-30,"mtr4","DEAD-box family ATP dependent helicase",3E-43,"SKI2","Ski complex component and putative RNA helicase, mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay",1e-47,"PHYPADRAFT_227295","hypothetical protein"]
["Contig15575",106.50140939031667,165.02972779596286,79.17271382900864,141.74946384244234,5E-52,"PPa6","pyrophosphorylase 6 \\\\ Encodes a protein with inorganic pyrophosphatase activity. \\\\ pyrophosphorylase 6 (PPa6); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 5 (TAIR:AT4G01480.1); Has 4681 Blast hits to 4677 proteins in 1304 species: Archae - 167; Bacteria - 3164; Metazoa - 258; Fungi - 287; Plants - 274; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).",7e-48,"AN2968.2","hypothetical protein","","","",9E-61,"ipy1","inorganic pyrophosphatase",1E-50,"IPP1","Cytoplasmic inorganic pyrophosphatase (PPase), homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase",1E-54,"PHYPADRAFT_134604","hypothetical protein"]
["Contig18502@@KO",0,0,1.2813223825120184,0,9e-34,"VLN3","villin 3 \\\\ Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling. \\\\ villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink).",2e-23,"AN1306.2","hypothetical protein","","","",2E-12,"chlredraft_190925","gelsolin","","","",3E-32,"PHYPADRAFT_149537","hypothetical protein"]
["Contig14086",5.519241370751924,3.572161056987268,3.1036226590391633,3.867311416283272,2e-42,"IBR3","acyl-CoA dehydrogenase-related \\\\ Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render   plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA  (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a  &#946;-oxidation-like process of IBA metabolism in Arabidopsis.  Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting  sequence and  two other putative IBA metabolic enzymes (IBR1 and IBR10)  can be found in this organelle. No specific enzymatic activity has been  documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty  acid &#946;-oxidation. \\\\ IBA-RESPONSE 3 (IBR3); FUNCTIONS IN: acyl-CoA dehydrogenase activity, oxidoreductase activity; INVOLVED IN: root hair elongation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Protein kinase-like domain (InterPro:IPR011009), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092), Aminoglycoside phosphotransferase (InterPro:IPR002575); BEST Arabidopsis thaliana protein match is: isovaleryl-CoA-dehydrogenase (TAIR:AT3G45300.1); Has 35245 Blast hits to 35197 proteins in 1774 species: Archae - 552; Bacteria - 22616; Metazoa - 1388; Fungi - 871; Plants - 174; Viruses - 0; Other Eukaryotes - 9644 (source: NCBI BLink).",1e-33,"AN2264.2","hypothetical protein","","","",3e-45,"chlredraft_118751","acyl-CoA dehydrogenase","","","",3e-50,"PHYPADRAFT_148260","hypothetical protein"]
["Contig3664",29.061769518332184,18.73021504213699,19.15227023715362,4.2160916895735365,3e-45,"PXA1","peroxisomal ABC transporter 1 \\\\ Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. \\\\ peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-58,"AN1014.2","hypothetical protein",6e-18,"ywja","ABC transporter ATP-binding protein",4e-32,"chlredraft_99858","hypothetical protein",3E-37,"PXA1","Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder",2e-72,"ppabcd1","ATP-binding cassette transporter, subfamily D, member 1, group PMP protein PpABCD1"]
["TRINITY_DN36750_c0_g2_i1@@W-35D-3@@KO",0.29746994815575056,0.1160632039224323,6.969817116925119,0,9e-22,"AT3G46930","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G58950.1); Has 131220 Blast hits to 129723 proteins in 5271 species: Archae - 120; Bacteria - 14071; Metazoa - 50237; Fungi - 12125; Plants - 33600; Viruses - 536; Other Eukaryotes - 20531 (source: NCBI BLink).",7e-12,"AN2067.2","hypothetical protein","","","",1e-20,"chlredraft_113099","hypothetical protein",5e-13,"CDC15","Protein kinase of the Mitotic Exit Network; localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p; required for spindle disassembly after meiosis II; relocalizes to the cytoplasm upon DNA replication stress",5e-20,"PHYPADRAFT_128329","hypothetical protein"]
["Contig11249",79.10768337519046,53.9708778137249,54.40806040513862,54.321936477478125,9e-136,"SK13","shaggy-like kinase 13 \\\\ shaggy-like kinase 13 (SK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-related kinase 11 (TAIR:AT5G26751.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1e-126,"AN6508.2","hypothetical protein",1E-13,"prkc","serine/threonine protein kinase",1E-135,"gsk3","glycogen synthase kinase 3",3e-96,"RIM11","Protein kinase; required for signal transduction during entry into meiosis; promotes the formation of the Ime1p-Ume6p complex by phosphorylating Ime1p and Ume6p; shares similarity with mammalian glycogen synthase kinase 3-beta; protein abundance increases in response to DNA replication stress; RIM11 has a paralog, MRK1, that arose from the whole genome duplication",8E-136,"PHYPADRAFT_211896","hypothetical protein"]
["Contig5038",6.322251654105452,0.9520747802988602,128.84920116994317,0.6901902881640488,1e-94,"FIB1","fibrillarin 1 \\\\ encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. \\\\ fibrillarin 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 2 (TAIR:AT4G25630.1); Has 20161 Blast hits to 7736 proteins in 898 species: Archae - 267; Bacteria - 4851; Metazoa - 6936; Fungi - 1342; Plants - 4220; Viruses - 452; Other Eukaryotes - 2093 (source: NCBI BLink).",8e-11,"AN0745.2","hypothetical protein","","","",4e-96,"nop1","nucleolar protein, component of C/D snoRNPs",1e-86,"Z74062","Dubious ORF unlikely to encode a protein, based on available experimental and comparative sequence data; completely overlaps the ORF YDL025C; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching",2e-97,"PHYPADRAFT_115973","hypothetical protein"]
["Contig5212",9.718703217379348,20.551816328762893,24.306092832490734,43.49518350769349,3e-35,"AT2G25870","haloacid dehalogenase-like hydrolase family protein \\\\ haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).",5e-17,"AN1859.2","hypothetical protein",4e-15,"yxeh","hypothetical protein",4e-49,"chlredraft_196269","haloacid dehalogenase-like hydrolase",1e-18,"YAF9","Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to antagonize silencing near telomeres; interacts directly with Swc4p, has homology to human leukemogenic protein AF9, contains a YEATS domain",8e-30,"PHYPADRAFT_77716","hypothetical protein"]
["Contig7807",8.239079620398357,3.7666299188450307,5.966823844490786,4.993685174378809,1e-57,"AT1G67580","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G63370.4); Has 126605 Blast hits to 124916 proteins in 4226 species: Archae - 92; Bacteria - 13797; Metazoa - 47943; Fungi - 13169; Plants - 29930; Viruses - 638; Other Eukaryotes - 21036 (source: NCBI BLink).",2e-39,"AN6044.2","similar to protein kinase NPKA","","","",7e-60,"cdkh1","cyclin dependent kinase",2e-38,"CDC28","Catalytic subunit of the main cell cycle cyclin-dependent kinase (CDK); alternately associates with G1 cyclins (CLNs) and G2/M cyclins (CLBs) which direct the CDK to specific substrates; involved in modulating membrane trafficking dynamics; protein abundance increases in response to DNA replication stress",2e-56,"PHYPADRAFT_21272","hypothetical protein"]
["Contig15635@@KO",0.11007143720919813,0,6.292782891985533,0,7e-74,"AGB1","GTP binding protein beta 1 \\\\ Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER.  Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase \\\\ GTP binding protein beta 1 (AGB1); FUNCTIONS IN: protein binding, GTPase activity, nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), G-protein, beta subunit (InterPro:IPR001632), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G67320.1); Has 60281 Blast hits to 28762 proteins in 834 species: Archae - 58; Bacteria - 8505; Metazoa - 23635; Fungi - 12687; Plants - 7683; Viruses - 0; Other Eukaryotes - 7713 (source: NCBI BLink).",2e-106,"AN0081.2","GBB_CRYPA Guanine nucleotide-binding protein beta subunit","","","",3E-28,"chlredraft_120222","hypothetical protein",4e-59,"STE4","G protein beta subunit, forms a dimer with Ste18p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste18p to dampen signaling; may recruit Rho1p to the polarized growth site during mating; contains WD40 repeats",1E-70,"GPB1","GPB1 heterotrimeric G protein beta subunit protein"]
["Contig11273@@KO",0.11063350412260681,0.08633126827932411,2.9032402465598555,0,2e-24,"UVR8","Regulator of chromosome condensation (RCC1) family protein \\\\ UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus. \\\\ UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-22,"AN6978.2","hypothetical protein","","","",9e-25,"chlredraft_122886","hypothetical protein",5e-17,"SRM1","Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p",2e-27,"PHYPADRAFT_195710","hypothetical protein"]
["Contig18224@@KO",0,0,1.8366693950329307,0,6e-21,"AT5G08710","Regulator of chromosome condensation (RCC1) family protein \\\\ Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 22297 Blast hits to 6326 proteins in 481 species: Archae - 85; Bacteria - 2816; Metazoa - 7462; Fungi - 1554; Plants - 2765; Viruses - 0; Other Eukaryotes - 7615 (source: NCBI BLink).","","","","","","",3e-13,"chlredraft_122886","hypothetical protein","","","",5e-20,"PHYPADRAFT_128224","hypothetical protein"]
["Contig7183@@KO",0.41614843487495157,0.5479910936697794,1.0969304009950576,0.13872457858485082,4e-19,"CYP705A13","cytochrome P450, family 705, subfamily A, polypeptide 13 \\\\ a member of the cytochrome P450 family \\\\ cytochrome P450, family 705, subfamily A, polypeptide 13 (CYP705A13); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G32047.1); Has 34037 Blast hits to 33818 proteins in 1716 species: Archae - 48; Bacteria - 4176; Metazoa - 11671; Fungi - 7418; Plants - 9440; Viruses - 6; Other Eukaryotes - 1278 (source: NCBI BLink).",7e-19,"AN7881.2","hypothetical protein",8e-12,"cypb","bifunctional P-450/NADPH-P450 reductase 2",1e-21,"cyp744b1","cytochrome P450, CYP711 clan","","","",8e-17,"PHYPADRAFT_168494","hypothetical protein"]
["Contig8276@@KO",111.15390799620408,123.17354363875602,127.03064574912067,133.1452062005625,9E-13,"PAB2","poly(A) binding protein 2 \\\\ Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins. \\\\ poly(A) binding protein 2 (PAB2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to salt stress, translational initiation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 987994 Blast hits to 947802 proteins in 35008 species: Archae - 20430; Bacteria - 568582; Metazoa - 213912; Fungi - 30250; Plants - 62241; Viruses - 64851; Other Eukaryotes - 27728 (source: NCBI BLink).",9e-22,"AN3739.2","hypothetical protein","","","",2e-25,"gbp1","G-strand telomere binding protein 1",3e-22,"GBP2","Poly(A+) RNA-binding protein; involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Npl3p; also binds single-stranded telomeric repeat sequence in vitro; GBP2 has a paralog, HRB1, that arose from the whole genome duplication","","",""]
["Contig91",6.792033743505936,3.9247325088293925,4.399503449027955,4.1958404831143,3e-13,"TRO","TRAUCO \\\\ Nuclear protein required for early embryogenesis. \\\\ TRAUCO (TRO); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: histone methylation, embryo development; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 2366 Blast hits to 2103 proteins in 282 species: Archae - 12; Bacteria - 162; Metazoa - 1213; Fungi - 403; Plants - 173; Viruses - 13; Other Eukaryotes - 390 (source: NCBI BLink).","","","","","","",2E-16,"chlredraft_193636","hypothetical protein","","","",5e-14,"HMTA1501","histone H3 methyltransferase complex, subunit CPS60/ASH2/BRE2"]
["Contig22398@@KO",0.6157222846373617,0,6.0591603724828245,0.3078798595768581,2e-42,"UBC36","ubiquitin-conjugating enzyme 36 \\\\ UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. \\\\ ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0; Bacteria - 4; Metazoa - 4493; Fungi - 2117; Plants - 1786; Viruses - 23; Other Eukaryotes - 1596 (source: NCBI BLink).",5e-38,"AN8702.2","hypothetical protein","","","",7e-42,"chlredraft_129070","hypothetical protein",3e-44,"UBC13","Ubiquitin-conjugating enzyme involved in the error-free DNA postreplication repair pathway; interacts with Mms2p to assemble ubiquitin chains at the Ub Lys-63 residue; DNA damage triggers redistribution from the cytoplasm to the nucleus",3E-43,"PHYPADRAFT_170260","hypothetical protein"]
["Contig11420@@KO",3.034415670963188,0.28414353005099674,41.80523639347831,0.4855360250469779,2e-40,"AT3G09680","Ribosomal protein S12/S23 family protein \\\\ Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT5G02960.1); Has 9046 Blast hits to 9043 proteins in 3116 species: Archae - 259; Bacteria - 5143; Metazoa - 487; Fungi - 298; Plants - 975; Viruses - 0; Other Eukaryotes - 1884 (source: NCBI BLink).",8e-38,"AN1345.2","RS23_NEUCR 40S ribosomal protein S23","","","",4e-39,"rps23","ribosomal protein S23",3e-39,"RPS23A","Dubious open reading frame unlikely to encode a functional protein, based on available experimental and comparative sequence data",2e-40,"PHYPADRAFT_197211","hypothetical protein"]
["Contig1130",0.9431272116860675,0.6746261442020944,0.810251774632625,0.9082517905050481,1E-54,"AT3G04230","Ribosomal protein S5 domain 2-like superfamily protein \\\\ Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT5G18380.1); Has 6825 Blast hits to 6825 proteins in 2403 species: Archae - 233; Bacteria - 4309; Metazoa - 365; Fungi - 183; Plants - 150; Viruses - 0; Other Eukaryotes - 1585 (source: NCBI BLink).",2e-33,"AN9468.2","hypothetical protein","","","",3e-54,"rps16","ribosomal protein S16",1E-50,"RPS16B","Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16A has a paralog, RPS16B, that arose from the whole genome duplication",6E-57,"PHYPADRAFT_149093","hypothetical protein"]
["Contig14258",667.0081355745226,890.3244084644834,416.39087377042694,647.665633547387,4e-45,"AT3G02080","Ribosomal protein S19e family protein \\\\ Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT5G15520.1); Has 1131 Blast hits to 1131 proteins in 394 species: Archae - 214; Bacteria - 4; Metazoa - 402; Fungi - 148; Plants - 164; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).",3e-33,"AN4060.2","RS19_EMENI 40S RIBOSOMAL PROTEIN S19 (S16)","","","",2e-38,"rps19","30S ribosomal protein S19",5e-31,"RPS19B","Protein component of the small (40S) ribosomal subunit, required for assembly and maturation of pre-40 S particles; homologous to mammalian ribosomal protein S19, no bacterial homolog; mutations in human RPS19 are associated with Diamond Blackfan anemia; RPS19B has a paralog, RPS19A, that arose from the whole genome duplication",9E-47,"PHYPADRAFT_163322","hypothetical protein"]
["Contig17695@@KO",0.03817749408048839,0,2.2541678125822666,0,6e-33,"AT4G38470","ACT-like protein tyrosine kinase family protein \\\\ ACT-like protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Amino acid-binding ACT (InterPro:IPR002912), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: ACT-like protein tyrosine kinase family protein (TAIR:AT4G35780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",9e-22,"AN5674.2","hypothetical protein","","","",4e-32,"chlredraft_105918","hypothetical protein",6e-21,"BCK1","Mitogen-activated protein (MAP) kinase kinase kinase acting in the protein kinase C signaling pathway, which controls cell integrity; upon activation by Pkc1p phosphorylates downstream kinases Mkk1p and Mkk2p",1e-36,"PHYPADRAFT_123192","hypothetical protein"]
["TRINITY_DN37735_c0_g1_i1@@W-35D-3@@KO",0.09576012327371122,0,2.1539430400680852,0,4E-14,"AT3G22750","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G14780.1); Has 129296 Blast hits to 127897 proteins in 4981 species: Archae - 144; Bacteria - 14276; Metazoa - 48853; Fungi - 11933; Plants - 33374; Viruses - 537; Other Eukaryotes - 20179 (source: NCBI BLink).","","","","","","",6e-12,"chlredraft_105918","hypothetical protein","","","",2e-15,"PHYPADRAFT_146497","hypothetical protein"]
["Contig4242@@KO",28.0060328754071,28.413165114087754,17.01171516307954,30.70101933625851,3e-151,"CPN60A","chaperonin-60alpha \\\\ Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development. \\\\ chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).",1E-125,"AN6089.2","HS60_PARBR Heat shock protein 60, mitochondrial precursor (60 kDa chaperonin) (Protein Cpn60)",2e-148,"groel","chaperonin",5e-150,"cpn60a","chaperonin 60A",2E-125,"HSP60","Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; phosphorylated",3e-149,"PHYPADRAFT_134633","hypothetical protein"]
["TRINITY_DN20352_c0_g1_i1@@W-35D-3@@KO",0.032288715187298304,0,1.8610762039336415,0,3e-46,"COX10","cytochrome c oxidase 10 \\\\ cytochrome c oxidase 10 (COX10); FUNCTIONS IN: protoheme IX farnesyltransferase activity, prenyltransferase activity; INVOLVED IN: heme o biosynthetic process, heme biosynthetic process; LOCATED IN: integral to membrane, mitochondrial membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protohaem IX farnesyltransferase, mitochondria (InterPro:IPR016315), Protohaem IX farnesyltransferase (InterPro:IPR006369), UbiA prenyltransferase (InterPro:IPR000537); Has 7990 Blast hits to 7990 proteins in 1845 species: Archae - 160; Bacteria - 4430; Metazoa - 177; Fungi - 179; Plants - 66; Viruses - 0; Other Eukaryotes - 2978 (source: NCBI BLink).",1e-40,"AN1722.2","hypothetical protein",2E-19,"ctao","protoheme IX farnesyltransferase",1E-42,"cox10","cytochrome c oxidase assembly protein",2e-33,"COX10","Heme A:farnesyltransferase, catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders",3e-44,"PHYPADRAFT_44233","hypothetical protein"]
["Contig15044@@KO",223.0909220203756,261.4543499140313,203.4288241297048,299.83758957985344,2e-93,"AT4G34670","Ribosomal protein S3Ae \\\\ Ribosomal protein S3Ae; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae (TAIR:AT3G04840.1); Has 1362 Blast hits to 1357 proteins in 408 species: Archae - 234; Bacteria - 1; Metazoa - 463; Fungi - 247; Plants - 191; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).",7e-82,"AN8870.2","hypothetical protein","","","",5e-90,"rps3a","ribosomal protein S3a",3e-71,"RPS1B","Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1B has a paralog, RPS1A, that arose from the whole genome duplication",3e-92,"PHYPADRAFT_162682","hypothetical protein"]
["Contig10916",31.310471274268934,25.523421734838887,22.569873773247988,25.507870012629297,2e-30,"UBL5","ubiquitin-like protein 5 \\\\ ubiquitin-like protein 5 (UBL5); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G45180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",3e-31,"chlredraft_150548","hypothetical protein",6e-18,"HUB1","Ubiquitin-like protein modifier; promotes alternative splicing of SRC1 pre-mRNA; binds non-covalently to the HIND domain of Snu66, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear",1e-30,"PHYPADRAFT_226768","hypothetical protein"]
["Contig23365@@KO",1.1484096231645298,0.19671475157376697,65.05078542106075,0.07469785000722738,6e-151,"DIS1","Actin-like ATPase superfamily protein \\\\ Mutant has defect in trichome cell expansion and  actin organization resulting in a distorted trichome phenotype. \\\\ DISTORTED TRICHOMES 1 (DIS1); FUNCTIONS IN: actin binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: actin filament organization, multidimensional cell growth, cell morphogenesis, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000), Actin-related protein 3 (InterPro:IPR015623); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 12406 Blast hits to 12242 proteins in 2483 species: Archae - 6; Bacteria - 5; Metazoa - 5339; Fungi - 3178; Plants - 1454; Viruses - 2; Other Eukaryotes - 2422 (source: NCBI BLink).",1e-137,"AN0140.2","ARP3_NEUCR Actin-like protein 3","","","",2E-107,"arp3","actin-related protein",3e-139,"ARP3","Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity",2E-150,"ARP1506","actin related protein Arp3 subunit"]
["TRINITY_DN33696_c0_g1_i1@@W-35D-3@@KO",14.640808640598383,10.465244977348995,6.726778091545671,10.040748287432114,1e-55,"AT1G04420","NAD(P)-linked oxidoreductase superfamily protein \\\\ NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: potassium channel beta subunit 1 (TAIR:AT1G04690.1); Has 28623 Blast hits to 28597 proteins in 2530 species: Archae - 619; Bacteria - 18927; Metazoa - 1497; Fungi - 1929; Plants - 977; Viruses - 0; Other Eukaryotes - 4674 (source: NCBI BLink).",9e-17,"AN9474.2","hypothetical protein",2e-24,"yrpg","oxidoreductase",2e-62,"chlredraft_115347","aldo/keto reductase",8e-13,"YPL088W","Putative aryl alcohol dehydrogenase; transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance",3e-56,"PHYPADRAFT_154932","hypothetical protein"]
["TRINITY_DN5773_c1_g1_i1@@W-35D-3@@KO",0,0,1.9216467382310896,0,5e-16,"AT1G56290","CwfJ-like family protein \\\\ CwfJ-like family protein; CONTAINS InterPro DOMAIN/s: Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein / zinc finger (CCCH-type) family protein (TAIR:AT5G56900.2); Has 2474 Blast hits to 2009 proteins in 284 species: Archae - 2; Bacteria - 39; Metazoa - 1047; Fungi - 300; Plants - 173; Viruses - 2; Other Eukaryotes - 911 (source: NCBI BLink).",9e-11,"AN5535.2","hypothetical protein","","","",3e-13,"chlredraft_178934","hypothetical protein","","","",2E-14,"PHYPADRAFT_135148","hypothetical protein"]
["TRINITY_DN14331_c0_g2_i1@@W-35D-3@@KO",0,0,3.7981324739809685,0,2e-30,"AT5G47930","Zinc-binding ribosomal protein family protein \\\\ Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",6e-31,"AN4777.2","RS27_XENLA 40S ribosomal protein S27","","","",5e-28,"rps27-a","ribosomal protein S27 isoform A",2e-27,"RPS27B","Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27B has a paralog, RPS27A, that arose from the whole genome duplication",1e-30,"PHYPADRAFT_57381","hypothetical protein"]
["TRINITY_DN49440_c0_g1_i1@@W-35D-3@@KO",0.11139191717571807,0,0.7829845964257781,0,3e-29,"AT5G06670","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G12020.1); Has 49021 Blast hits to 33870 proteins in 1834 species: Archae - 494; Bacteria - 4897; Metazoa - 23456; Fungi - 4567; Plants - 3807; Viruses - 58; Other Eukaryotes - 11742 (source: NCBI BLink).",3e-27,"AN8286.2","hypothetical protein","","","",1E-26,"chlredraft_151003","hypothetical protein",9e-18,"CIN8","Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation",2e-28,"PHYPADRAFT_115683","hypothetical protein"]
["TRINITY_DN50727_c0_g1_i1@@W-35D-3@@KO",0,0,0.46265469571082685,0,2e-24,"AT5G43530","Helicase protein with RING/U-box domain \\\\ Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",3E-28,"AN7538.2","hypothetical protein",3e-12,"ywqa","ATP-dependent helicase YwqA",4E-14,"chlredraft_152316","hypothetical protein",8e-20,"RAD5","DNA helicase; proposed to promote replication fork regression during postreplication repair by template switching; RING finger containing ubiquitin ligase; stimulates the synthesis of free and PCNA-bound polyubiquitin chains by Ubc13p-Mms2p; required for error-prone translesion synthesis; forms nuclear foci upon DNA replication stress",1e-23,"CHR1526","SNF2 superfamily RAD5 protein"]
["Contig3023",0.6165044521737404,1.8555958578330334,0.7428805073405553,0.5871827945181948,5e-41,"AT1G70600","Ribosomal protein L18e/L15 superfamily protein \\\\ Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G23290.1); Has 1077 Blast hits to 1077 proteins in 419 species: Archae - 174; Bacteria - 17; Metazoa - 357; Fungi - 165; Plants - 139; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).",5e-40,"AN3444.2","hypothetical protein","","","",9E-46,"rpl27a","ribosomal protein L27a",2e-39,"RPL28","Ribosomal 60S subunit protein L28; homologous to mammalian ribosomal protein L27A and bacterial L15; may have peptidyl transferase activity; can mutate to cycloheximide resistance",2e-43,"PHYPADRAFT_112570","hypothetical protein"]
["Contig13076@@KO",0.0323127932746863,0,1.8624640310804972,0,2e-28,"AT1G77660","Histone H3 K4-specific methyltransferase SET7/9 family protein \\\\ Histone H3 K4-specific methyltransferase SET7/9 family protein; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: Histone H3 K4-specific methyltransferase SET7/9 family protein (TAIR:AT1G21920.1); Has 25589 Blast hits to 6526 proteins in 562 species: Archae - 0; Bacteria - 3550; Metazoa - 4135; Fungi - 204; Plants - 2355; Viruses - 0; Other Eukaryotes - 15345 (source: NCBI BLink).","","","","","","",5e-27,"chlredraft_105117","hypothetical protein","","","",3e-29,"PHYPADRAFT_40660","hypothetical protein"]
["TRINITY_DN29806_c1_g1_i2@@W-35D-3@@KO",0,0,0.8050599330650952,0,9e-14,"AT1G33360","ATP-dependent Clp protease \\\\ Encodes ClpX3, a subunit of the Clp protease complex. \\\\ ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLP protease regulatory subunit X (TAIR:AT5G53350.1); Has 27211 Blast hits to 23373 proteins in 3012 species: Archae - 715; Bacteria - 14972; Metazoa - 1896; Fungi - 1201; Plants - 919; Viruses - 6; Other Eukaryotes - 7502 (source: NCBI BLink).","","","",1e-34,"hslu","ATP-dependent protease ATPase subunit ClpY",1e-36,"hslu1","ATP-dependent subunit of the HslUV protease","","","",2e-36,"PHYPADRAFT_102041","hypothetical protein"]
["TRINITY_DN31494_c0_g1_i1@@W-25D-4@@WT",0.26997791764083695,0.3160100941688655,0.18977009844836615,0,7e-53,"AT1G76030","ATPase, V1 complex, subunit B protein \\\\ Encodes the vacuolar ATP synthase subunit B1. This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus. \\\\ ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, ATP binding; INVOLVED IN: response to cadmium ion, glucose mediated signaling pathway; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G20260.1); Has 40608 Blast hits to 39489 proteins in 9699 species: Archae - 963; Bacteria - 21151; Metazoa - 1673; Fungi - 795; Plants - 8192; Viruses - 0; Other Eukaryotes - 7834 (source: NCBI BLink).",1E-51,"AN6232.2","VATB_NEUCR Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit)","","","",1E-51,"atpvb","vacuolar ATP synthase subunit B",5E-53,"VMA2","Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm; protein abundance increases in response to DNA replication stress",3E-52,"PHYPADRAFT_173198","hypothetical protein"]
["Contig12722",271.31896416734907,180.84128829037365,190.79800210591904,159.78131517196854,3e-26,"VPS2.1","SNF7 family protein \\\\ VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).",1e-11,"AN6898.2","hypothetical protein","","","",4e-26,"vps2a","subunit of the ESCRT-III complex",4e-23,"DID4","Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis",3e-27,"PHYPADRAFT_181789","hypothetical protein"]
["TRINITY_DN47546_c0_g1_i1@@W-35D-3@@KO",0,0,0.7678512806965404,0,"","","",4e-11,"AN4810.2","hypothetical protein","","","",4e-13,"chlredraft_142102","hypothetical protein",4e-16,"CPS1","Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions","","",""]
["Contig264",56.10913120672526,31.35469610628133,42.953097473981614,26.002800964457403,8e-18,"AT3G12050","Aha1 domain-containing protein \\\\ Aha1 domain-containing protein; FUNCTIONS IN: ATPase activator activity, chaperone binding; INVOLVED IN: response to stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Activator of Hsp90 ATPase, N-terminal (InterPro:IPR015310), Activator of Hsp90 ATPase homologue 1-like (InterPro:IPR013538); Has 600 Blast hits to 579 proteins in 214 species: Archae - 0; Bacteria - 24; Metazoa - 217; Fungi - 180; Plants - 73; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).",3e-17,"AN5602.2","hypothetical protein","","","",4e-18,"chlredraft_190619","hypothetical protein","","","",8e-24,"PHYPADRAFT_227834","hypothetical protein"]
["Contig6028",2.0567849440796793,0.16266715880084323,39.54278128361042,0.22236864777648635,4e-153,"mtLPD1","mitochondrial lipoamide dehydrogenase 1 \\\\ Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light. \\\\ mitochondrial lipoamide dehydrogenase 1 (mtLPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to light stimulus; LOCATED IN: mitochondrion, apoplast, mitochondrial respiratory chain complex I, mitochondrial matrix; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: lipoamide dehydrogenase 2 (TAIR:AT3G17240.3); Has 41363 Blast hits to 41324 proteins in 3251 species: Archae - 1062; Bacteria - 30027; Metazoa - 916; Fungi - 551; Plants - 652; Viruses - 0; Other Eukaryotes - 8155 (source: NCBI BLink).",7e-31,"AN0932.2","hypothetical protein",3e-87,"pdhd","dihydrolipoyl dehydrogenase",2E-132,"gcsl","dihydrolipoyl dehydrogenase",3E-134,"LPD1","Dihydrolipoamide dehydrogenase, the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes",7e-146,"PHYPADRAFT_106783","hypothetical protein"]
["TRINITY_DN25265_c1_g1_i1@@W-35D-3@@KO",0.22509847159145105,0,0.6328956010589666,0,1e-20,"AT5G15810","N2,N2-dimethylguanosine tRNA methyltransferase \\\\ N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT3G02320.1); Has 1017 Blast hits to 963 proteins in 359 species: Archae - 255; Bacteria - 70; Metazoa - 198; Fungi - 150; Plants - 103; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).",5E-15,"AN9406.2","hypothetical protein","","","",2E-16,"trm1","N2,N2-dimethylguanosine tRNA methyltransferase",1e-21,"TRM1","tRNA methyltransferase; two forms of the protein are made by alternative translation starts; localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments",1e-21,"PHYPADRAFT_116130","hypothetical protein"]
["Contig16248@@KO",0.46200766545776223,0,11.96446159409312,0.06484712343500604,0,"MCCB","3-methylcrotonyl-CoA carboxylase \\\\ MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. \\\\ 3-methylcrotonyl-CoA carboxylase (MCCB); FUNCTIONS IN: biotin carboxylase activity, cobalt ion binding, methylcrotonoyl-CoA carboxylase activity, zinc ion binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-coenzyme A carboxyltransferase, N-terminal (InterPro:IPR011762), Carboxyl transferase (InterPro:IPR000022), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",0,"AN4687.2","hypothetical protein",7e-95,"ynge","carboxylase YngE",0,"chlredraft_24506","3-methylcrotonyl-CoA carboxylase","","","",0,"PHYPADRAFT_208593","hypothetical protein"]
["Contig8673",2.6673718548078993,0.546379410278117,1.4436896039853082,1.4938190539764824,3e-30,"ATGWD3","catalytics;carbohydrate kinases;phosphoglucan, water dikinases \\\\ chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position. \\\\ ATGWD3; FUNCTIONS IN: carbohydrate kinase activity, catalytic activity, phosphoglucan, water dikinase activity; INVOLVED IN: protein amino acid autophosphorylation, carbohydrate metabolic process, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), ATP-grasp fold, subdomain 1 (InterPro:IPR013815); BEST Arabidopsis thaliana protein match is: Pyruvate phosphate dikinase, PEP/pyruvate binding domain (TAIR:AT1G10760.1); Has 3898 Blast hits to 3880 proteins in 1425 species: Archae - 252; Bacteria - 2881; Metazoa - 32; Fungi - 198; Plants - 278; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).","","","","","","",2e-22,"pwd1","phosphoglucan water dikinase","","","",5e-25,"PHYPADRAFT_104427","hypothetical protein"]
["TRINITY_DN31954_c0_g1_i2@@W-35D-3@@KO",11.030977770235044,7.6060878737316004,13.36858850078834,9.002839522213424,4e-19,"AT3G63460","transducin family protein / WD-40 repeat family protein \\\\ transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).",8e-18,"AN6257.2","hypothetical protein","","","",5e-20,"sec31","COP-II coat subunit",6e-17,"SEC31","Component of the Sec13p-Sec31p complex of the COPII vesicle coat, required for vesicle formation in ER to Golgi transport; mutant has increased aneuploidy tolerance",1e-23,"PHYPADRAFT_148700","hypothetical protein"]
["Contig9702",0.38787748141877276,0.4540119447553969,0.7010816041142325,0.2216577505649247,1e-80,"GLN1.3","glutamine synthetase 1.3 \\\\ encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium \\\\ glutamine synthetase 1.3 (GLN1.3); FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cytosolic ribosome, chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone R1 (TAIR:AT5G37600.1); Has 10255 Blast hits to 10251 proteins in 3319 species: Archae - 147; Bacteria - 5273; Metazoa - 413; Fungi - 249; Plants - 1750; Viruses - 3; Other Eukaryotes - 2420 (source: NCBI BLink).",4e-84,"AN4159.2","similar to glutamine synthetase","","","",5e-76,"gln1","glutamine synthetase",1E-84,"GLN1","Glutamine synthetase (GS); synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress",3E-79,"PHYPADRAFT_160180","hypothetical protein"]
["TRINITY_DN33621_c0_g1_i1@@W-25D-4@@WT",0.2311010975005564,0.2705046406085489,0,0,1e-28,"LOS1","Ribosomal protein S5/Elongation factor G/III/V family protein \\\\ encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. \\\\ LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (LOS1); FUNCTIONS IN: translation factor activity, nucleic acid binding, copper ion binding, translation elongation factor activity; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleolus, chloroplast, plasma membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT3G12915.1); Has 64297 Blast hits to 57476 proteins in 4618 species: Archae - 1324; Bacteria - 41101; Metazoa - 3172; Fungi - 1934; Plants - 1269; Viruses - 1; Other Eukaryotes - 15496 (source: NCBI BLink).",1e-29,"AN6330.2","EF2_NEUCR Elongation factor 2 (EF-2) (Colonial temperature-sensitive 3)","","","",1e-29,"efg2","elongation factor 2",4e-30,"YRA1","Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin; EFT1 has a paralog, EFT2, that arose from the whole genome duplication",6e-29,"PHYPADRAFT_109208","hypothetical protein"]
["TRINITY_DN18310_c0_g1_i1@@W-35D-3@@KO",0.3588526358704292,0.10500956545362923,2.017928003376415,0,4e-17,"AT5G16040","Regulator of chromosome condensation (RCC1) family protein \\\\ Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G02510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","",3e-13,"chlredraft_194222","hypothetical protein",4e-11,"ATS1","Protein required, with Elongator complex, Kti11p, and Kti12p, for modification of wobble nucleosides in tRNA; has a potential role in regulatory interactions between microtubules and the cell cycle",3e-16,"PHYPADRAFT_195710","hypothetical protein"]
["TRINITY_DN35888_c0_g1_i1@@W-35D-3@@KO",0.03255556407314375,0,4.210586436797257,0,5e-40,"PAP20","Purple acid phosphatases superfamily protein \\\\ PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2203 Blast hits to 2179 proteins in 456 species: Archae - 3; Bacteria - 801; Metazoa - 198; Fungi - 77; Plants - 777; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).",7e-21,"AN2360.2","hypothetical protein","","","",2e-31,"chlredraft_193786","hypothetical protein","","","",4e-39,"PHYPADRAFT_153950","hypothetical protein"]
["Contig1268@@WT",2.8903052148715536,1.0014012509187875,20.738813565650208,0.18499078008726907,0,"HSP70","heat shock protein 70 \\\\ heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).",0,"AN5129.2","HS70_TRIRU Heat shock 70 kDa protein",2E-113,"dnak","chaperone protein DnaK",0,"hsp70a","heat shock protein 70A",0,"SSA2","ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall; 98% identical with paralog Ssa1p, but subtle differences between the two proteins provide functional specificity with respect to propagation of yeast [URE3] prions and vacuolar-mediated degradations of gluconeogenesis enzymes",0,"PHYPADRAFT_226216","hypothetical protein"]
["Contig14326",68.54248459959685,129.5655750187538,79.65624034928153,108.7291718634746,0,"MTHSC70-2","mitochondrial HSO70 2 \\\\ heat shock protein 70 (Hsc70-5); nuclear \\\\ mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).",0,"AN6010.2","similar to 70 kDa heat shock protein",0,"dnak","chaperone protein DnaK",0,"hsp70c","heat shock protein 70C",0,"SSC1","Hsp70 family ATPase; constituent of the import motor component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); involved in protein translocation and folding; subunit of SceI endonuclease; SSC1 has a paralog, ECM10, that arose from the whole genome duplication",0,"PHYPADRAFT_141802","hypothetical protein"]
["Contig3244",2.6132413555705187,1.2127433077229708,1.6022061526542581,1.3815331637229367,2e-94,"ILA","ILITYHIA \\\\ ILITYHIA (ILA) is a HEAT repeat protein involved in plant immunity. The gene is also involved in systemic acquired resistance induced by P. syringae expressing avrRps4. Loss-of-function mutants of ILA caused pleiotropic defects in the mutant plants. The mutant plants are smaller in size and the leaves are serrated and yellow to light green in color. \\\\ ILITYHIA (ILA); FUNCTIONS IN: binding; INVOLVED IN: systemic acquired resistance, defense response to bacterium; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 3576 Blast hits to 2493 proteins in 284 species: Archae - 50; Bacteria - 199; Metazoa - 1336; Fungi - 986; Plants - 555; Viruses - 13; Other Eukaryotes - 437 (source: NCBI BLink).",7e-68,"AN5840.2","hypothetical protein","","","",4e-64,"chlredraft_116760","hypothetical protein",4e-64,"GCN1","Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA",8e-82,"PHYPADRAFT_159348","hypothetical protein"]
["TRINITY_DN44630_c0_g1_i1@@W-35D-3@@KO",0,0,0.7001862253094889,0,4e-16,"VAMP711","vesicle-associated membrane protein 711 \\\\ AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions.  VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs. \\\\ vesicle-associated membrane protein 711 (VAMP711); INVOLVED IN: intermembrane transport, response to salt stress, cellular membrane fusion, response to abscisic acid stimulus, stomatal movement; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2432 Blast hits to 2430 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 955; Fungi - 502; Plants - 549; Viruses - 3; Other Eukaryotes - 423 (source: NCBI BLink).","","","","","","",9e-17,"vamp72","R-SNARE protein, VAMP72-family","","","",5e-16,"VAMP71A3","R-SNARE, VAMP71-family"]
["Contig24524@@KO",0.28791664970999553,0,1.7202249621806216,0,5e-24,"NHO1","Actin-like ATPase superfamily protein \\\\ Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. \\\\ nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 17039 Blast hits to 17024 proteins in 2439 species: Archae - 160; Bacteria - 12245; Metazoa - 663; Fungi - 209; Plants - 115; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).",2e-28,"AN3916.2","hypothetical protein",6e-25,"glpk","glycerol kinase",4e-25,"chlredraft_128764","glycerol kinase",5e-14,"GUT1","Glycerol kinase, converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p",3E-23,"PHYPADRAFT_127293","hypothetical protein"]
["TRINITY_DN375_c1_g1_i1@@W-35D-3@@KO",0,0,1.990002956142758,0,1E-22,"AT3G12760","CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).","","","","","","",3e-16,"chlredraft_189714","hypothetical protein","","","","","",""]
["Contig7203",274.80551573386293,506.8787074313947,240.90022135847545,417.06518771200797,9e-15,"LHCA2","photosystem I light harvesting complex gene 2 \\\\ Encodes a component of the light harvesting antenna complex of photosystem I. \\\\ photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",1E-13,"lhca4","light-harvesting protein of photosystem I","","","",5e-17,"PHYPADRAFT_63624","hypothetical protein"]
["Contig7502",8.3370757342247,5.084450134547778,5.549523818114215,8.556056742465195,0,"AT2G13440","glucose-inhibited division family A protein \\\\ glucose-inhibited division family A protein; FUNCTIONS IN: FAD binding; INVOLVED IN: tRNA processing, tRNA wobble uridine modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-inhibited division protein A-related (InterPro:IPR002218), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glucose-inhibited division protein A (InterPro:IPR004416), Glucose-inhibited division protein A-related, conserved site (InterPro:IPR020595); Has 12829 Blast hits to 12787 proteins in 2525 species: Archae - 2; Bacteria - 6632; Metazoa - 144; Fungi - 175; Plants - 52; Viruses - 0; Other Eukaryotes - 5824 (source: NCBI BLink).",5e-111,"AN6577.2","hypothetical protein",1E-142,"gida","tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG",0,"gida1","tRNA uridine 5-carboxymethylaminomethyl modification enzyme",1e-105,"MTO1","Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants",0,"PHYPADRAFT_112486","hypothetical protein"]
["Contig847",20.551027204066084,65.38038963258542,33.81067628669393,57.50854008171016,4e-76,"MDAR4","monodehydroascorbate reductase 4 \\\\ Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 \\\\ monodehydroascorbate reductase 4 (MDAR4); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: hydrogen peroxide catabolic process; LOCATED IN: peroxisomal membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase 1 (TAIR:AT3G52880.1); Has 27219 Blast hits to 27159 proteins in 2894 species: Archae - 579; Bacteria - 21951; Metazoa - 737; Fungi - 533; Plants - 600; Viruses - 0; Other Eukaryotes - 2819 (source: NCBI BLink).",4e-15,"AN1007.2","NIR_EMENI Nitrite reductase","","","",8e-69,"mdar1","monodehydroascorbate reductase","","","",3e-86,"PHYPADRAFT_195364","hypothetical protein"]
["TRINITY_DN49229_c0_g1_i1@@W-35D-3@@KO",0.24903135506525476,0.05829841392425623,2.8707635237689044,0,1e-71,"emb2444","RNA-binding (RRM/RBD/RNP motifs) family protein \\\\ embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink).",9e-64,"AN6501.2","hypothetical protein","","","",7E-72,"chlredraft_196073","nuclear pre-mRNA splicing factor, component of splicing factor 3b",2e-25,"HSH49","U2-snRNP associated splicing factor with similarity to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM)",3e-73,"PHYPADRAFT_184121","hypothetical protein"]
["Contig19473@@KO",0.7081193276651242,0.03187908240986984,17.995358109934006,0,2e-43,"AT4G36190","Serine carboxypeptidase S28 family protein \\\\ Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36195.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",1E-27,"AN7231.2","hypothetical protein","","","",5e-19,"chlredraft_99229","hypothetical protein","","","",8e-52,"PHYPADRAFT_228057","hypothetical protein"]
["Contig11294",365.7612148034329,478.71894720607645,225.17750010902228,203.44764072611537,7e-27,"AT1G13640","Phosphatidylinositol 3- and 4-kinase family protein \\\\ Phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 7 (TAIR:AT2G03890.1); Has 641 Blast hits to 624 proteins in 172 species: Archae - 0; Bacteria - 6; Metazoa - 171; Fungi - 87; Plants - 282; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).","","","","","","",7e-20,"chlredraft_111968","hypothetical protein","","","",3E-23,"PHYPADRAFT_118568","hypothetical protein"]
["Contig21317@@KO",0.28087567094572635,0,4.0203975129143545,0,3e-178,"PGM","phosphoglucomutase \\\\ Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional  PGM activity that is required for full development of amyloplasts. \\\\ phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).",6E-148,"AN2867.2","PGMU_EMENI Phosphoglucomutase (Glucose phosphomutase) (PGM)",1e-11,"pgca","phosphoglucomutase",7e-168,"gpm1a","phosphoglucomutase",1e-137,"PGM2","Phosphoglucomutase; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase; protein abundance increases in response to DNA replication stress",2E-174,"PHYPADRAFT_107070","hypothetical protein"]
["Contig14913",10.496837146443294,5.693783055645231,4.678940152585122,7.595734182086474,2E-19,"SR1","serine/threonine protein kinase 1 \\\\ Encodes a CBL-interacting serine/threonine protein kinase. \\\\ serine/threonine protein kinase 1 (SR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SOS3-interacting protein 4 (TAIR:AT2G30360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",8E-14,"AN3110.2","hypothetical protein","","","",2e-15,"chlredraft_106184","hypothetical protein",3e-14,"SNF1","AMP-activated serine/threonine protein kinase; found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; regulates filamentous growth in response to starvation",5e-20,"snf1a","snf1a Snf1-related kinase SNF1a"]
["Contig2523",5.108805004647506,3.3178656159834055,3.8304305266930867,3.4866509384839017,1e-44,"CPK2","calmodulin-domain protein kinase cdpk isoform 2 \\\\ predicted to encode calcium-dependent  protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal,  to A prevented the meristoylation .  The G to A mutation decreased AtCPK2 membrane association by approximately 50%. \\\\ calmodulin-domain protein kinase cdpk isoform 2 (CPK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium dependent protein kinase 1 (TAIR:AT5G04870.1); Has 145304 Blast hits to 132515 proteins in 4265 species: Archae - 224; Bacteria - 17128; Metazoa - 53382; Fungi - 18632; Plants - 28672; Viruses - 609; Other Eukaryotes - 26657 (source: NCBI BLink).",5e-43,"AN2412.2","KCC1_EMENI Calcium/calmodulin-dependent protein kinase (CMPK)",2E-14,"prkc","serine/threonine protein kinase",6e-42,"cdpk1","calcium-dependent protein kinase 1",1e-36,"CMK1","Calmodulin-dependent protein kinase; may play a role in stress response, many Ca++/calmodulin dependent phosphorylation substrates demonstrated in vitro, amino acid sequence similar to mammalian Cam Kinase II; CMK1 has a paralog, CMK2, that arose from the whole genome duplication",4e-47,"cpk17","cpk17 calcium-dependent protein kinase"]
["Contig17406@@KO",0,0,1.465897899511577,0,1e-12,"CIPK15","CBL-interacting protein kinase 15 \\\\ Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase. \\\\ CBL-interacting protein kinase 15 (CIPK15); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SOS3-interacting protein 1 (TAIR:AT5G58380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1e-12,"AN4279.2","hypothetical protein",7e-11,"prkc","serine/threonine protein kinase",6e-13,"chlredraft_168407","hypothetical protein",5e-13,"Z73506","Protein kinase of unknown cellular role; binds phosphatidylinositols and cardiolipin in a large-scale study",5e-12,"PHYPADRAFT_136474","hypothetical protein"]
["Contig13396@@KO",0.15820173706226479,0,4.4480614532256695,0.021094847382471842,0,"AT4G34450","coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative \\\\ coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit, appendage, Ig-like subdomain (InterPro:IPR013040), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Coatomer, gamma subunit (InterPro:IPR017106), Coatomer, gamma subunit , appendage (InterPro:IPR014863), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: structural molecules (TAIR:AT2G16200.1); Has 1647 Blast hits to 1638 proteins in 222 species: Archae - 2; Bacteria - 2; Metazoa - 707; Fungi - 446; Plants - 176; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).",3E-153,"AN4547.2","hypothetical protein","","","",4e-180,"copg1","gamma-cop",8e-100,"SEC21","Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo",0,"PHYPADRAFT_171134","hypothetical protein"]
["Contig11539",34.51981802288186,32.218123468706885,27.712401986620215,31.009160308241377,8e-11,"AT3G06320","Ribosomal protein L33 family protein \\\\ Ribosomal protein L33 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L33 (InterPro:IPR001705); BEST Arabidopsis thaliana protein match is: Ribosomal protein L33 family protein (TAIR:AT5G18790.1); Has 2830 Blast hits to 2830 proteins in 1196 species: Archae - 0; Bacteria - 2547; Metazoa - 35; Fungi - 17; Plants - 59; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).","","","","","","",1e-11,"mrpl33","mitochondrial ribosomal protein L33","","","",3e-13,"PHYPADRAFT_227094","hypothetical protein"]
["TRINITY_DN24704_c0_g1_i1@@W-35D-3@@KO",0,0,1.5524760116995586,0,4e-43,"AT2G04650","ADP-glucose pyrophosphorylase family protein \\\\ ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT1G74910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",2e-33,"AN1911.2","hypothetical protein","","","",4e-26,"gmp1","GDP-D-mannose pyrophosphorylase",1e-32,"PSA1","GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure",8e-46,"PHYPADRAFT_174644","hypothetical protein"]
["TRINITY_DN20273_c0_g1_i1@@W-35D-3@@KO",0,0,0.5972176627639758,0,8e-19,"TIL2","DNA polymerase epsilon catalytic subunit \\\\ Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. \\\\ TILTED 2 (TIL2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT1G08260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",3e-15,"AN3067.2","hypothetical protein","","","",1e-15,"pole1","DNA polymerase epsilon catalytic subunit A/1",2e-13,"POL2","Catalytic subunit of DNA polymerase (II) epsilon, a chromosomal DNA replication polymerase that exhibits processivity and proofreading exonuclease activity; also involved in DNA synthesis during DNA repair; interacts extensively with Mrc1p",4e-26,"PHYPADRAFT_136896","hypothetical protein"]
["Contig4768",4.580533015245751,2.013401512112025,3.504991082358784,2.6544224170387194,2e-25,"ATPC1","ATPase, F1 complex, gamma subunit protein \\\\ One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase. \\\\ ATPC1; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: photosynthetic electron transport in photosystem II, ATP synthesis coupled proton transport, ATP biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT1G15700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","",5e-25,"atpc","chloroplast ATP synthase gamma chain","","","",9e-28,"PHYPADRAFT_148997","hypothetical protein"]
["Contig4248@@WT",1.2765404321839244,2.9053792209387925,0.9471422507664364,1.4184644921585197,5e-13,"PGP9","P-glycoprotein  9 \\\\ P-glycoprotein  9 (PGP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein  7 (TAIR:AT5G46540.1); Has 831635 Blast hits to 388928 proteins in 4153 species: Archae - 14569; Bacteria - 650940; Metazoa - 17965; Fungi - 11827; Plants - 9524; Viruses - 32; Other Eukaryotes - 126778 (source: NCBI BLink).",7e-13,"AN2300.2","similar to AF071411_1 multidrug resistance protein MDR","","","",1e-12,"chlredraft_138602","MDR-like ABC transporter",4e-11,"MDL1","Mitochondrial inner membrane half-type ATP-binding cassette (ABC) transporter, mediates export of peptides generated upon proteolysis of mitochondrial proteins, plays a role in the regulation of cellular resistance to oxidative stress",2e-13,"ppabcb12","ATP-binding cassette transporter, subfamily B, member 12, group MDR/PGP protein PpABCB12"]
["Contig12154",5.437105377145127,3.266769425288117,6.452002268906235,6.078350443330237,3e-53,"AT3G13900","ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \\\\ ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G54280.1); Has 2989 Blast hits to 2738 proteins in 536 species: Archae - 31; Bacteria - 1088; Metazoa - 612; Fungi - 467; Plants - 304; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).",6E-52,"AN6112.2","hypothetical protein","","","",2E-50,"ala1","phospholipid-transporting ATPase",2E-55,"DRS2","Aminophospholipid translocase (flippase) that maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; mutations in human homolog ATP8B1 result in liver disease",1E-53,"PHYPADRAFT_189702","hypothetical protein"]
["Contig23804@@KO",23.317375308352105,14.537350010282859,20.760678572853546,16.733393090417618,"","","",7e-25,"AN3419.2","hypothetical protein",5E-36,"maa","maltose O-acetyltransferase",1e-29,"chlredraft_113366","hypothetical protein",2e-30,"Z49493","Putative acetyltransferase; similar to bacterial galactoside O-acetyltransferases; induced by oleate in an OAF1/PIP2-dependent manner; promoter contains an oleate response element consensus sequence; non-essential gene",1e-24,"PHYPADRAFT_183437","hypothetical protein"]
["TRINITY_DN35293_c0_g1_i2@@W-35D-3@@KO",0.6951570446206576,0.04520465250811312,28.557862783077393,0.10299249016148017,2e-134,"FYPP3","flower-specific, phytochrome-associated protein phosphatase 3 \\\\ Encodes catalytic subunit of serine/threonine protein phosphatase 2A.  It can associate with phytochromes A and B in vitro.  Mutant plants display an accelerated flowering phenotype. \\\\ flower-specific, phytochrome-associated protein phosphatase 3 (FYPP3); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G50370.1); Has 6822 Blast hits to 6670 proteins in 515 species: Archae - 81; Bacteria - 277; Metazoa - 2341; Fungi - 1410; Plants - 975; Viruses - 8; Other Eukaryotes - 1730 (source: NCBI BLink).",2e-111,"AN6391.2","P2A1_EMENI Serine/threonine protein phosphatase PP2A catalytic subunit (Protein phosphatase 2a)","","","",1e-138,"ppa1","serine/threonine protein phosphatase 2A",1e-122,"SIT4","Type 2A-related serine-threonine phosphatase that functions in the G1/S transition of the mitotic cycle; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization",7e-134,"PHYPADRAFT_206051","hypothetical protein"]
["Contig18779@@KO",0.15683567242475713,0,2.3623139194128306,0,1e-177,"ACS","acetyl-CoA synthetase \\\\ Encodes a plastidic acetyl-coA synthetase. This enzyme plays a role in converting acetate to acetyl-coA in the plastids. It does not appear to be a major contributor to  fatty acid biosynthesis based on mutant phenotypes. The enzyme seems to act as a monomer and may play an important role  in preventing the toxic accumulation of fermentation products including acetaldehyde, acetate, and ethanol. It participates in  the pyruvate dehydrogenase bypass pathway \\\\ acetyl-CoA synthetase (ACS); FUNCTIONS IN: acetate-CoA ligase activity; INVOLVED IN: metabolic process, acetate metabolic process; LOCATED IN: cytosol, chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acetate--CoA ligase (InterPro:IPR011904), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl-activating enzyme 17 (TAIR:AT5G23050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",0,"AN5626.2","ACSA_EMENI Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme)",1E-87,"acsa","acetyl-CoA synthetase",0,"acs2","acetyl CoA synthetase",0,"ACS2","Acetyl-coA synthetase isoform which, along with Acs1p, is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions",0,"PHYPADRAFT_56608","hypothetical protein"]
["Contig11754",6.25402454576248,6.928195531050141,9.812532474536974,16.492269737372123,2E-50,"ATS1","phospholipid/glycerol acyltransferase family protein \\\\ Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. \\\\ ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 391 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).","","","","","","",2E-45,"plsb1","glycerol-3-phosphate acyltransferase","","","",3e-48,"PHYPADRAFT_216994","hypothetical protein"]
["Contig13054",19.38798900586611,16.178594288280408,60.82877253611724,16.626690763700566,4e-12,"CAM3","calmodulin 3 \\\\ encodes a calmodulin \\\\ calmodulin 3 (CAM3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 34068 Blast hits to 23201 proteins in 1763 species: Archae - 4; Bacteria - 227; Metazoa - 14490; Fungi - 7344; Plants - 6998; Viruses - 0; Other Eukaryotes - 5005 (source: NCBI BLink).",1e-60,"AN7707.2","hypothetical protein","","","",1E-10,"cam1","calmodulin",6e-14,"MLP1","Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs",7e-13,"PHYPADRAFT_161424","hypothetical protein"]
["TRINITY_DN31553_c0_g1_i1@@W-25D-4@@WT",0.14253768349129714,0.6673634225539857,0.20038224211159716,0.7602471971130312,3e-15,"AT3G59540","Ribosomal L38e protein family \\\\ Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT2G43460.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).","","","","","","",1E-14,"rpl38","ribosomal protein L38","","","",2e-13,"PHYPADRAFT_224447","hypothetical protein"]
["Contig8696",0.46097293384419497,0.5395704267457757,0.3240223489464124,0.4610009599515189,1E-26,"AT2G39390","Ribosomal L29 family protein  \\\\ Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein  (TAIR:AT5G02610.1); Has 1205 Blast hits to 1205 proteins in 485 species: Archae - 136; Bacteria - 319; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).",1E-25,"AN1228.2","hypothetical protein","","","",3e-19,"rpl35","ribosomal protein L35",1e-17,"RPL35B","Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; open reading frame is located in promoter region of essential gene SEC31",8e-28,"PHYPADRAFT_214555","hypothetical protein"]
["Contig6898",13.895949612641216,1.3991619341821495,208.48044858590035,1.7931347683631496,2e-28,"AT2G32220","Ribosomal L27e protein family \\\\ Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, intracellular, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 767 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).",4e-28,"AN4222.2","hypothetical protein","","","",2e-31,"rpl27","ribosomal protein L27",2e-32,"RPL27A","Ribosomal 60S subunit protein L27A; homologous to mammalian ribosomal protein L27, no bacterial homolog; RPL27A has a paralog, RPL27B, that arose from the whole genome duplication",7e-33,"PHYPADRAFT_198656","hypothetical protein"]
["TRINITY_DN40979_c0_g1_i1@@W-25D-2@@KO",0.2526615497455063,0.295741225155119,0.5327947661975995,0,1e-37,"EIF4A-2","eif4a-2 \\\\ member of eIF4A - eukaryotic initiation factor 4A \\\\ eif4a-2 (EIF4A-2); FUNCTIONS IN: ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A1 (TAIR:AT3G13920.1); Has 47858 Blast hits to 47246 proteins in 3099 species: Archae - 743; Bacteria - 25967; Metazoa - 6043; Fungi - 4764; Plants - 2602; Viruses - 17; Other Eukaryotes - 7722 (source: NCBI BLink).",6e-38,"AN2932.2","similar to EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (EIF4A)",3e-20,"csha","ATP-dependent RNA helicase",2E-35,"chlredraft_188942","eukaryotic initiation factor 4A-like protein",1e-29,"TIF1","Dubious ORF unlikely to encode a functional protein, based on available experimental and comparative sequence data",2E-35,"PHYPADRAFT_228441","hypothetical protein"]
["Contig7602",122.31869690285411,141.48508714645666,131.10125749755815,194.3309239627275,4e-66,"AT3G58700","Ribosomal L5P family protein \\\\ Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).",3e-67,"AN4475.2","hypothetical protein",6E-11,"rple","50S ribosomal protein L5",2e-56,"rpl11","ribosomal protein L11",1e-64,"RPL11A","Ribosomal 60S subunit protein L11A; expressed at twice the level of Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11A has a paralog, RPL11B, that arose from the whole genome duplication",6e-63,"PHYPADRAFT_222638","hypothetical protein"]
["Contig17084@@WT",13.519101623398194,9.375583519739493,15.270247110311361,12.243476050891557,8e-30,"AT5G28050","Cytidine/deoxycytidylate deaminase family protein \\\\ Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G05300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","",8e-27,"guad","guanine deaminase",9E-13,"chlredraft_74200","hypothetical protein","","","",1e-28,"PHYPADRAFT_62373","hypothetical protein"]
["Contig7444",5.362471503603514,4.4465285732089335,17.680128470251134,12.087879941699779,"","","","","","","","","",3e-12,"chlredraft_178766","hypothetical protein","","","","","",""]
["TRINITY_DN28910_c1_g1_i1@@W-35D-3@@KO",0,0,1.2625119502989748,0,4E-55,"AT4G28450","nucleotide binding;protein binding \\\\ This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase \\\\ nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink).",9e-58,"AN4226.2","hypothetical protein","","","",7E-39,"chlredraft_98291","hypothetical protein",1E-52,"SOF1","Essential protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p",1e-57,"PHYPADRAFT_199410","hypothetical protein"]
["TRINITY_DN1963_c0_g1_i1@@W-35D-3@@KO",0,0,0.7251928762133992,0,8e-33,"AT5G15700","DNA/RNA polymerases superfamily protein \\\\ Nucleus  encoded plastid RNA polymerase. Localized in mitochondria and chloroplast. \\\\ DNA/RNA polymerases superfamily protein; FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion, chloroplast, thylakoid membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1300 Blast hits to 1280 proteins in 331 species: Archae - 0; Bacteria - 39; Metazoa - 134; Fungi - 224; Plants - 203; Viruses - 137; Other Eukaryotes - 563 (source: NCBI BLink).",2e-40,"AN7609.2","hypothetical protein","","","",3e-18,"chlredraft_111616","hypothetical protein",2e-40,"RPO41","Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation",2e-34,"PHYPADRAFT_222742","hypothetical protein"]
["Contig2392",7.9282858266614245,7.0587889793836665,11.649667751609117,9.47515874085594,3e-116,"CYP51G1","CYTOCHROME P450 51G1 \\\\ putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. \\\\ CYTOCHROME P450 51G1 (CYP51G1); FUNCTIONS IN: sterol 14-demethylase activity, oxygen binding; INVOLVED IN: sterol biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 707, subfamily A, polypeptide 4 (TAIR:AT3G19270.1); Has 30265 Blast hits to 30215 proteins in 1662 species: Archae - 71; Bacteria - 5605; Metazoa - 9913; Fungi - 5125; Plants - 8048; Viruses - 6; Other Eukaryotes - 1497 (source: NCBI BLink).",1E-54,"AN8283.2","hypothetical protein",2e-13,"cypx","cytochrome P450 CypX",2e-101,"cyp51g1","sterol 14 desaturase",1e-48,"ERG11","Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p",2e-105,"PHYPADRAFT_134753","hypothetical protein"]
["TRINITY_DN34396_c0_g1_i2@@W-35D-3@@KO",0.09084162637600489,0.17721740081796966,1.319638189839058,0,2e-20,"ANTR2","Major facilitator superfamily protein \\\\ Encodes an inorganic phosphate transporter (PHT4;4). \\\\ ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 4;1 (TAIR:AT2G29650.1); Has 37886 Blast hits to 37799 proteins in 2473 species: Archae - 506; Bacteria - 30466; Metazoa - 2514; Fungi - 1637; Plants - 427; Viruses - 0; Other Eukaryotes - 2336 (source: NCBI BLink).","","","","","","",2E-16,"chlredraft_78631","hypothetical protein","","","",1e-18,"PHYPADRAFT_206025","hypothetical protein"]
["Contig4486",0.8186779769756553,0,28.032961870791645,0.31189628599508973,4e-54,"AT3G27360","Histone superfamily protein \\\\ Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 14605 Blast hits to 14597 proteins in 7244 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2040; Plants - 1257; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).",1e-49,"AN0733.2","H3_EMENI Histone H3","","","",4E-55,"htr45","histone H3",3E-49,"HHT1","Histone H3, core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT1); regulated by acetylation, methylation, and phosphorylation",3e-54,"HTR1503","histone H3"]
["Contig15737",87.14894169658062,78.68324155751255,69.27312658441575,101.00070959678696,1E-89,"PHB4","prohibitin 4 \\\\ Part of protein complexes that are necessary for proficient mitochondrial function or  biogenesis, thereby supporting cell division and differentiation in apical tissues \\\\ prohibitin 4 (PHB4); INVOLVED IN: response to stress; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 3 (TAIR:AT5G40770.1); Has 5142 Blast hits to 5142 proteins in 1589 species: Archae - 203; Bacteria - 3017; Metazoa - 622; Fungi - 283; Plants - 261; Viruses - 12; Other Eukaryotes - 744 (source: NCBI BLink).",1e-82,"AN0686.2","hypothetical protein","","","",2e-93,"phb2","prohibitin",1e-81,"PHB1","Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation",2E-91,"PHYPADRAFT_109165","hypothetical protein"]
["TRINITY_DN47204_c0_g1_i1@@W-35D-3@@KO",0.15661971969164215,0,1.6880393214991416,0,8e-13,"AT1G18790","RWP-RK domain-containing protein \\\\ RWP-RK domain-containing protein; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 558 Blast hits to 554 proteins in 54 species: Archae - 0; Bacteria - 12; Metazoa - 59; Fungi - 0; Plants - 419; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).","","","","","","",1e-11,"rwp10","RWP-RK transcription factor","","","",2E-14,"PHYPADRAFT_159049","hypothetical protein"]
["TRINITY_DN22127_c2_g1_i2@@W-35D-5@@WT",13.997462055879307,14.057490075082121,29.060940213762642,22.960860301799073,5e-37,"AT1G09780","Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent \\\\ Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrial envelope, cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TAIR:AT3G08590.2); Has 4822 Blast hits to 4813 proteins in 1698 species: Archae - 54; Bacteria - 3035; Metazoa - 34; Fungi - 85; Plants - 379; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink).",1E-22,"AN3059.2","similar to phosphoglyceromutase",6e-27,"pgm","2,3-bisphosphoglycerate-independent phosphoglycerate mutase",5e-34,"pgm1a","phosphoglycerate mutase",8e-12,"ERV29","Protein localized to COPII-coated vesicles; involved in vesicle formation and incorporation of specific secretory cargo; protein abundance increases in response to DNA replication stress",1E-35,"PHYPADRAFT_169645","hypothetical protein"]
["Contig21022@@KO",0.20852481126734518,0.09763160753436557,4.455853052691378,0.11121999418785443,1e-17,"AT1G65040","RING/U-box superfamily protein \\\\ RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G16090.1); Has 7722 Blast hits to 7710 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2325; Fungi - 695; Plants - 3566; Viruses - 25; Other Eukaryotes - 1111 (source: NCBI BLink).",1e-11,"AN1488.2","hypothetical protein","","","",1E-10,"chlredraft_122373","hypothetical protein","","","",5e-17,"PHYPADRAFT_2973","hypothetical protein"]
["TRINITY_DN42211_c0_g1_i1@@W-35D-3@@KO",0,0,0.8441044101883446,0,8e-33,"SRT1","sirtuin 1 \\\\ Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230). \\\\ sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","",8e-13,"yhdz","NAD-dependent protein deacetylase",2e-28,"chlredraft_113408","NADH-dependent histone deacetylase","","","",9e-30,"SRT1502","class IV sirtuin"]
["Contig5964@@KO",18.634872454706983,16.456411038826715,9.786176791645078,10.950853128090232,3E-98,"F2KP","fructose-2,6-bisphosphatase \\\\ Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. \\\\ fructose-2,6-bisphosphatase (F2KP); FUNCTIONS IN: fructose-2,6-bisphosphate 2-phosphatase activity; INVOLVED IN: N-terminal protein myristoylation, fructose metabolic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase (InterPro:IPR016260), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345), Fructose-2,6-bisphosphatase (InterPro:IPR003094), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), 6-phosphofructo-2-kinase (InterPro:IPR013079); BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT3G30200.1); Has 5078 Blast hits to 4946 proteins in 1364 species: Archae - 8; Bacteria - 3312; Metazoa - 533; Fungi - 529; Plants - 140; Viruses - 0; Other Eukaryotes - 556 (source: NCBI BLink).",6E-103,"AN6720.2","hypothetical protein","","","",8e-81,"chlredraft_121054","hypothetical protein",2e-82,"PFK26","6-phosphofructo-2-kinase, inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate; has negligible fructose-2,6-bisphosphatase activity; transcriptional regulation involves protein kinase A",1E-100,"PHYPADRAFT_61651","hypothetical protein"]
["Contig20632@@KO",0.2811448874702633,0,6.916681447096169,0.04686033007347151,2E-90,"MNS2","alpha-mannosidase 2 \\\\ Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation. \\\\ alpha-mannosidase 2 (MNS2); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: alpha-mannosidase 1 (TAIR:AT1G51590.1); Has 2046 Blast hits to 1918 proteins in 195 species: Archae - 0; Bacteria - 11; Metazoa - 790; Fungi - 842; Plants - 175; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).",3e-55,"AN5748.2","hypothetical protein","","","",1E-46,"amd1","alpha-1,2-mannosidase",2e-60,"MNS1","Alpha-1,2-mannosidase involved in ER-associated protein degradation (ERAD); catalyzes the removal of one mannose residue from a glycosylated protein, converting the modification from Man9GlcNAc to Man8GlcNAc; catalyzes the last step in glycoprotein maturation in the ER and is critical for ER protein degradation",9e-90,"PHYPADRAFT_67790","hypothetical protein"]
["Contig22416@@KO",0.45452575994427613,0.059113776356763306,2.6269224467030825,0,2e-61,"AT1G45160","Protein kinase superfamily protein \\\\ Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126096 Blast hits to 124371 proteins in 4582 species: Archae - 166; Bacteria - 15020; Metazoa - 47097; Fungi - 12526; Plants - 29423; Viruses - 526; Other Eukaryotes - 21338 (source: NCBI BLink).",2E-35,"AN4717.2","hypothetical protein",5e-14,"prkc","serine/threonine protein kinase",6E-49,"stpk15","serine/threonine protein kinase 15",1E-35,"YPK1","Serine/threonine protein kinase; phosphorylates and downregulates flippase activator Fpk1p; inactivates Orm1p and Orm2p (inhibitors of serine:palmitoyl-coenzyme A transferase) by phosphorylation in response to compromised sphingolipid synthesis; mutations affect receptor-mediated endocytosis and sphingolipid-mediated and cell integrity signaling pathways; homolog of mammalian kinase SGK; YPK1 has a paralog, YPK2, that arose from the whole genome duplication",2E-55,"PHYPADRAFT_140919","hypothetical protein"]
["TRINITY_DN27999_c0_g1_i1@@W-35D-3@@KO",0.06754708617514314,0,1.1395080580251074,0,2e-69,"AT2G28390","SAND family protein \\\\ SAND family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar fusion protein MON1 (InterPro:IPR004353); Has 753 Blast hits to 594 proteins in 226 species: Archae - 6; Bacteria - 38; Metazoa - 289; Fungi - 213; Plants - 47; Viruses - 3; Other Eukaryotes - 157 (source: NCBI BLink).",2E-50,"AN2093.2","hypothetical protein","","","",1e-40,"chlredraft_150402","hypothetical protein",2e-36,"MON1","Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate",3E-57,"PHYPADRAFT_155076","hypothetical protein"]
["Contig19523@@KO",1.1622064979413629,0.05515000374857149,43.91530445314603,0.020941930764983827,7e-64,"PHOT2","phototropin 2 \\\\ Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation.  Localized to the Golgi apparatus under the induction of blue light. \\\\ phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116748 Blast hits to 111792 proteins in 3621 species: Archae - 310; Bacteria - 19900; Metazoa - 40386; Fungi - 12616; Plants - 24323; Viruses - 447; Other Eukaryotes - 18766 (source: NCBI BLink).",1e-63,"AN0144.2","hypothetical protein",3e-12,"prkc","serine/threonine protein kinase",3e-66,"phot","phototropin",2E-78,"KIN82","Putative serine/threonine protein kinase; implicated in the regulation of phospholipid asymmetry through the activation of phospholipid translocases (flippases) Lem3p-Dnf1p/Dnf2p; KIN82 has a paralog, FPK1, that arose from the whole genome duplication",3e-67,"PhotA2","PHOTA2 phototropin A2 blue light photoreceptor"]
["Contig1791",3.138168221054202,2.3523191633369174,3.737990251705741,3.854667558105744,4e-69,"ABCG14","ATP-binding cassette 14 \\\\ ATP-binding cassette 14 (ABCG14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 394116 Blast hits to 359785 proteins in 4146 species: Archae - 7090; Bacteria - 311308; Metazoa - 8766; Fungi - 6614; Plants - 5656; Viruses - 7; Other Eukaryotes - 54675 (source: NCBI BLink).",6e-55,"AN5194.2","hypothetical protein",5e-20,"yfil","ABC transporter ATP-binding protein",3e-71,"chlredraft_79831","hypothetical protein",5e-57,"Z74817","Putative ABC transporter",8e-71,"ppabcg2","ATP-binding cassette transporter, subfamily G, member 2, group WBC protein PpABCG2"]
["Contig13738",13.300782589960082,7.054527497884817,13.001299622473317,17.781641077160106,5e-81,"IMP4","Ribosomal RNA processing Brix domain protein \\\\ Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies. \\\\ IMP4; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT4G01560.1); Has 804 Blast hits to 801 proteins in 232 species: Archae - 12; Bacteria - 0; Metazoa - 253; Fungi - 267; Plants - 106; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).",5e-58,"AN0647.2","hypothetical protein","","","",3e-80,"chlredraft_127225","hypothetical protein",2E-66,"IMP4","Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs",2e-86,"PHYPADRAFT_225967","hypothetical protein"]
["TRINITY_DN36028_c0_g1_i1@@W-25D-2@@KO",0.45373252127072594,0.3983216239327454,0,0.3025067381182742,1e-47,"TUB3","tubulin beta chain 3 \\\\ encodes tubulin beta-2/beta-3 chain \\\\ tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",6e-48,"AN1182.2","TBB1_EMENI TUBULIN BETA-1 CHAIN","","","",1e-48,"tub2","beta tubulin 2",5e-45,"TUB2","Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria",2e-49,"PHYPADRAFT_232451","hypothetical protein"]
["Contig15434@@KO",0,0,1.079356839015292,0,1E-61,"ACT9","actin 9 \\\\ actin related gene or pseudogene, based on sequence divergence and lack of expression \\\\ actin 9 (ACT9); FUNCTIONS IN: structural constituent of cytoskeleton, ATP binding; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13583 Blast hits to 13117 proteins in 2659 species: Archae - 4; Bacteria - 4; Metazoa - 5780; Fungi - 3581; Plants - 1612; Viruses - 2; Other Eukaryotes - 2600 (source: NCBI BLink).",2e-56,"AN6542.2","ACT_BOTCI Actin","","","",5e-60,"ida5","actin",2e-58,"ACT1","Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions",6e-60,"PHYPADRAFT_172686","hypothetical protein"]
["TRINITY_DN9143_c0_g1_i1@@W-35D-3@@KO",0,0,0.9518156500300865,0,3e-12,"CBR","NADH:cytochrome B5 reductase 1 \\\\ Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor. \\\\ NADH:cytochrome B5 reductase 1 (CBR); FUNCTIONS IN: cytochrome-b5 reductase activity; INVOLVED IN: electron transport chain; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase (TAIR:AT5G20080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",7e-16,"AN3862.2","hypothetical protein","","","",4e-13,"cbr1","NADH-cytochrome b5 reductase",5E-15,"PGA3","Putative cytochrome b5 reductase, localized to the plasma membrane; may be involved in regulation of lifespan; required for maturation of Gas1p and Pho8p, proposed to be involved in protein trafficking; PGA3 has a paralog, AIM33, that arose from the whole genome duplication",1e-11,"PHYPADRAFT_115361","hypothetical protein"]
["Contig5299",12.389265412824681,10.501632089386568,10.595384124232938,17.428626237175937,0,"AT4G10320","tRNA synthetase class I (I, L, M and V) family protein \\\\ tRNA synthetase class I (I, L, M and V) family protein; FUNCTIONS IN: isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, guard cell, epidermis, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.3); Has 38868 Blast hits to 32849 proteins in 3074 species: Archae - 1055; Bacteria - 22228; Metazoa - 780; Fungi - 735; Plants - 304; Viruses - 0; Other Eukaryotes - 13766 (source: NCBI BLink).",0,"AN0705.2","hypothetical protein",5e-81,"iles","isoleucine--tRNA ligase",0,"chlredraft_139213","aminoacyl-tRNA ligase",0,"ILS1","Cytoplasmic isoleucine-tRNA synthetase, target of the G1-specific inhibitor reveromycin A",0,"PHYPADRAFT_220535","hypothetical protein"]
["Contig3546@@WT",1.3168431606692181,0.7706847560812531,1.6764039947853895,1.8534474972669543,1E-59,"RAPTOR1","HEAT repeat ;WD domain, G-beta repeat protein protein \\\\ Encodes one of two Arabidopsis RAPTOR/KOG1 homologs.  RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients.   Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. \\\\ RAPTOR1; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), Regulatory associated protein of TOR (InterPro:IPR004083), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT5G01770.1); Has 7799 Blast hits to 6065 proteins in 379 species: Archae - 2; Bacteria - 1590; Metazoa - 2741; Fungi - 1618; Plants - 862; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).",5e-55,"AN4639.2","hypothetical protein","","","",1e-33,"chlredraft_107651","TOR binding partner raptor",3e-42,"KOG1","Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors",1e-64,"PHYPADRAFT_118820","hypothetical protein"]
["Contig17396@@KO",0.21760931968037328,0.09551717535612601,12.236776216331558,0,4e-23,"IDH-V","isocitrate dehydrogenase V \\\\ Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase. \\\\ isocitrate dehydrogenase V (IDH-V); FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, zinc ion binding, ATP binding; INVOLVED IN: isocitrate metabolic process, tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase VI (TAIR:AT3G09810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",6e-22,"AN1003.2","similar to AF439265_1 isocitrate dehydrogenase",4e-153,"icd","isocitrate dehydrogenase",1e-23,"idh2","isocitrate dehydrogenase, NAD-dependent",3e-19,"IRC14","Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated",2e-37,"PHYPADRAFT_129687","hypothetical protein"]
["Contig1453",18.014539764253854,10.101539939159773,10.138560015919362,10.018745096216577,"","","","","","","","","",4e-13,"chlredraft_120664","hypothetical protein","","","","","",""]
["Contig10733",5.699996005698366,3.7476723941169485,5.67178682907259,1.091249455895842,"","","","","","","","","",9e-28,"chlredraft_98158","hypothetical protein","","","","","",""]
["Contig5014",3.8453079964910466,0.9181034987541808,6.239540296532771,2.6274680172189,9e-21,"AT2G40860","protein kinase family protein / protein phosphatase 2C ( PP2C) family protein \\\\ protein kinase family protein / protein phosphatase 2C ( PP2C) family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 2 (TAIR:AT4G31750.1); Has 131448 Blast hits to 130118 proteins in 4510 species: Archae - 166; Bacteria - 15372; Metazoa - 47633; Fungi - 11848; Plants - 35207; Viruses - 642; Other Eukaryotes - 20580 (source: NCBI BLink).","","","","","","",7e-27,"pp2c5","protein phosphatase 2C-related protein","","","",9e-23,"PHYPADRAFT_106079","hypothetical protein"]
["Contig19170@@KO",0.1020363950895314,0.03981131877088141,2.582005405419136,0,3e-17,"TAP38","thylakoid-associated phosphatase 38 \\\\ Choroplast protein phosphatase TAP38/PPH1 is  required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1. \\\\ thylakoid-associated phosphatase 38 (TAP38); FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: photosynthetic electron transport chain, photosystem stoichiometry adjustment, dephosphorylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G31860.1); Has 5988 Blast hits to 5975 proteins in 460 species: Archae - 6; Bacteria - 321; Metazoa - 1365; Fungi - 680; Plants - 2480; Viruses - 9; Other Eukaryotes - 1127 (source: NCBI BLink).",5e-11,"AN1358.2","hypothetical protein","","","",6E-11,"pp2c3","protein phosphatase 2C catalytic subunit",1E-13,"PTC2","Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; inactivates the DNA damage checkpoint; PTC2 has a paralog, PTC3, that arose from the whole genome duplication",4e-22,"PHYPADRAFT_113608","hypothetical protein"]
["TRINITY_DN39018_c0_g1_i1@@W-25D-2@@KO",0.35300574974626747,0.10329861530367193,0,0,4e-28,"SQS2","squalene synthase 2 \\\\ Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. \\\\ squalene synthase 2 (SQS2); FUNCTIONS IN: farnesyl-diphosphate farnesyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Farnesyl-diphosphate farnesyltransferase (InterPro:IPR006449), Squalene/phytoene synthase (InterPro:IPR002060); BEST Arabidopsis thaliana protein match is: squalene synthase 1 (TAIR:AT4G34640.1); Has 1176 Blast hits to 1175 proteins in 496 species: Archae - 34; Bacteria - 579; Metazoa - 114; Fungi - 168; Plants - 163; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).",7e-18,"AN3376.2","hypothetical protein","","","",3e-29,"chlredraft_99438","farnesyl-diphosphate farnesyltransferase",2e-20,"ERG9","Farnesyl-diphosphate farnesyl transferase (squalene synthase), joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway",4e-28,"PHYPADRAFT_59853","hypothetical protein"]
["Contig2645",6.304341873653295,2.1253612183247954,5.432017977241768,4.629275926369795,"","","","","","",7e-20,"uvrc","UvrABC system protein C","","","","","","","","",""]
["Contig20144@@KO",0.160190224700016,0.093751608343998,10.058867547329664,0.07119998395636522,"","","",4e-21,"AN5656.2","hypothetical protein",7e-11,"yvma","MFS transporter","","","",4e-17,"QDR3","Multidrug transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; has a role in polyamine homeostasis; expression is upregulated under polyamine stress; required for resistance to quinidine, barban, cisplatin, and bleomycin","","",""]
["Contig20943@@KO",2.361070837572679,0.7475424134727093,2.6118603634590674,0.5935292990413481,5e-90,"S1P","SITE-1 protease \\\\ S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro. \\\\ SITE-1 protease (S1P); CONTAINS InterPro DOMAIN/s: Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",1E-13,"AN5558.2","similar to alkaline protease",2e-22,"apre","subtilisin E","","","","","","",1e-82,"PHYPADRAFT_163394","hypothetical protein"]
["Contig15269@@KO",0.057981430572731044,0,2.037785512999293,0,"","","","","","",5E-15,"bkdaa","2-oxoisovalerate dehydrogenase subunit alpha","","","","","","","","",""]
["Contig5016",813.0512885343769,102.67088705422505,98.16432487444051,154.63645894526636,"","","","","","",1E-10,"ywdh","aldehyde dehydrogenase YwdH","","","","","","",2e-11,"ALDH5A","SSADH"]
["Contig20012@@KO",2.246816225699854,0.16697817321515362,32.93987197733751,0.047554557185671094,6e-31,"AT3G51000","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G05600.1); Has 19118 Blast hits to 19078 proteins in 1849 species: Archae - 110; Bacteria - 13477; Metazoa - 828; Fungi - 558; Plants - 614; Viruses - 8; Other Eukaryotes - 3523 (source: NCBI BLink).",1e-16,"AN5183.2","hypothetical protein",7e-61,"yfhm","AB hydrolase superfamily protein YfhM","","","","","","",5e-21,"PHYPADRAFT_174988","hypothetical protein"]
["Contig2978@@KO",4.368007610709168,1.4402163780625532,2.9694125721714766,1.9961436107823458,"","","","","","",3e-16,"ywqf","UDP-glucose 6-dehydrogenase YwqF","","","","","","",3e-27,"PHYPADRAFT_103490","hypothetical protein"]
["Contig12311@@KO",2.4364572887439717,0.2193755195246666,5.743828697759415,0.5497981460090778,"","","",9e-15,"AN5957.2","hypothetical protein",6e-14,"ybge","branched-chain-amino acid transaminase 1","","","",4e-17,"BAT2","Cytosolic branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA catabolism; homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase; BAT2 has a paralog, BAT1, that arose from the whole genome duplication",7e-15,"PHYPADRAFT_128032","hypothetical protein"]
["TRINITY_DN56061_c0_g1_i1@@W-35D-3@@KO",0.1393294398114287,0.16308559522219587,1.3711042161205105,0,"","","","","","",5e-13,"thid","pyridoxine kinase","","","","","","","","",""]
["Contig15811",0.42691089439757957,0.29982041446760344,1.9205107894203124,1.3092730054715058,"","","","","","",5e-17,"pbpe","penicillin-binding protein 4","","","","","","","","",""]
["TRINITY_DN19587_c0_g1_i1@@W-35D-3@@KO",0,0.04230160142961044,4.166078841833106,0,"","","",4e-13,"AN6323.2","similar to p150 dynactin NUDM","","","","","","","","","","","",""]
["Contig24632@@KO",0.24230077790132898,0,3.633398790795186,0,"","","",5e-12,"AN4745.2","hypothetical protein","","","","","","","","","","","",""]
["Contig21467@@KO",0.27955777923454406,0.2181489037165717,3.864576230659792,0,6e-22,"CPSF30","cleavage and polyadenylation specificity factor 30 \\\\ Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding  protein capable of  interacting with itself and with calmodulin. Its RNA-binding  activity is inhibited by calmodulin in a calcium-dependent fashion. \\\\ cleavage and polyadenylation specificity factor 30 (CPSF30); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: YTH family protein (TAIR:AT4G11970.3); Has 12035 Blast hits to 8168 proteins in 547 species: Archae - 4; Bacteria - 678; Metazoa - 8047; Fungi - 1112; Plants - 779; Viruses - 126; Other Eukaryotes - 1289 (source: NCBI BLink).",5e-29,"AN0298.2","hypothetical protein","","","","","","",7e-32,"YTH1","Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation",2e-20,"PHYPADRAFT_159145","hypothetical protein"]
["Contig12198@@KO",0.21542627164025588,0,3.4611478182912236,0.041036070298714755,"","","",7e-44,"AN2130.2","hypothetical protein","","","","","","",2e-27,"CDC25","Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates adenylate cyclase through activation of Ras1p and Ras2p by stimulating the exchange of GDP for GTP; required for progression through G1","","",""]
["TRINITY_DN51456_c0_g1_i1@@W-35D-3@@KO",0,0,0.5755861568685877,0,"","","",4e-26,"AN2130.2","hypothetical protein","","","","","","",5e-22,"CDC25","Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates adenylate cyclase through activation of Ras1p and Ras2p by stimulating the exchange of GDP for GTP; required for progression through G1","","",""]
["Contig5079",5.192422590978833,4.033904038767464,5.200163551383887,10.99818903819297,1e-40,"AT5G37350","Serine/threonine-protein kinase Rio1 \\\\ Serine/threonine-protein kinase Rio1; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), Serine/threonine-protein kinase Rio1 (InterPro:IPR017407), RIO kinase (InterPro:IPR000687), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Serine/threonine-protein kinase Rio1 (TAIR:AT2G24990.1); Has 12159 Blast hits to 6760 proteins in 774 species: Archae - 403; Bacteria - 825; Metazoa - 4615; Fungi - 1188; Plants - 588; Viruses - 131; Other Eukaryotes - 4409 (source: NCBI BLink).",2e-37,"AN6363.2","similar to extragenic suppressor of the bimD6 mutation","","","","","","",9e-31,"RIO1","Essential serine kinase involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA",5e-43,"PHYPADRAFT_142435","hypothetical protein"]
["Contig23606@@KO",0,0,1.2813223825120184,0,1e-11,"AT2G37290","Ypt/Rab-GAP domain of gyp1p superfamily protein \\\\ Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G55020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",4e-11,"AN0281.2","hypothetical protein","","","","","","",7e-14,"BUB2","Mitotic exit network regulator, forms GTPase-activating Bfa1p-Bub2p complex that binds Tem1p and spindle pole bodies, blocks cell cycle progression before anaphase in response to spindle and kinetochore damage",4e-13,"PHYPADRAFT_168144","hypothetical protein"]
["Contig10386",7.085775285640882,5.999351860810477,7.549934505799443,5.064493109514519,3e-14,"SUC2","sucrose-proton symporter 2 \\\\ Encodes for a high-affinity  transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both &#945;- or &#946;-linkage. \\\\ sucrose-proton symporter 2 (SUC2); CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2329 Blast hits to 2203 proteins in 568 species: Archae - 32; Bacteria - 908; Metazoa - 423; Fungi - 192; Plants - 420; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).",1E-14,"AN2289.2","hypothetical protein","","","","","","","","","",3e-12,"PHYPADRAFT_131577","hypothetical protein"]
["Contig12126@@KO",1.4933003180740054,0.09040930501622622,37.75139528865617,0.24031581037678706,5e-104,"NPC2","non-specific phospholipase C2 \\\\ non-specific phospholipase C2 (NPC2); FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: triglyceride biosynthetic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C1 (TAIR:AT1G07230.1); Has 2169 Blast hits to 2123 proteins in 400 species: Archae - 32; Bacteria - 1806; Metazoa - 0; Fungi - 127; Plants - 155; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).",5e-63,"AN8546.2","hypothetical protein","","","","","","","","","",2e-105,"PHYPADRAFT_145030","hypothetical protein"]
["TRINITY_DN38308_c0_g1_i1@@W-35D-3@@KO",0.19025886182812,0,2.2066242073145363,0,2e-11,"AT4G12400","stress-inducible protein, putative \\\\ stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 51058 Blast hits to 20866 proteins in 1460 species: Archae - 1964; Bacteria - 17234; Metazoa - 10505; Fungi - 2946; Plants - 4231; Viruses - 7; Other Eukaryotes - 14171 (source: NCBI BLink).",2E-12,"AN4192.2","hypothetical protein","","","","","","",1e-11,"TOM70","Component of the TOM (translocase of outer membrane) complex; involved in the recognition and initial import steps for all mitochondrially directed proteins; acts as a receptor for incoming precursor proteins; TOM70 has a paralog, TOM71, that arose from the whole genome duplication",1e-11,"PHYPADRAFT_197643","hypothetical protein"]
["Contig21703@@KO",0.3752496170673347,0.046234840578033655,18.935665219923983,0.1580094447965097,"","","",1e-34,"AN7159.2","hypothetical protein","","","","","","","","","","","",""]
["TRINITY_DN44726_c0_g1_i1@@W-35D-3@@KO",0.12633077487275315,0,0.5327947661975995,0,3e-15,"AT5G41190","CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-11,"AN8253.2","hypothetical protein","","","","","","","","","",2e-11,"PHYPADRAFT_233290","hypothetical protein"]
["TRINITY_DN1968_c0_g1_i1@@W-35D-3@@KO",0,0,0.6806279508595032,0,1e-19,"AT5G59980","Polymerase/histidinol phosphatase-like \\\\ Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).",4e-18,"AN1486.2","hypothetical protein","","","","","","",1E-10,"RPP1","Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs",2e-15,"PHYPADRAFT_162971","hypothetical protein"]
["Contig6381@@KO",6.215740448929379,3.53317243691276,6.4210478315503545,4.130839032526168,"","","",7e-11,"AN2000.2","similar to UBI4 locus contains five-six tandem, in-frame copies of ubiquitin protein coding sequence (depending on strain background)(PMID:6095120, 3038523)transcription of UBI4 is induced in response to several stress conditions; Ubi4p [Saccharomyces cerevisi","","","","","","",4e-11,"RPL40A","Ubiquitin-ribosomal 60S subunit protein L40B fusion protein; cleaved to yield ubiquitin and ribosomal protein L40B; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40B has a paralog, RPL40A, that arose from the whole genome duplication","","",""]
["TRINITY_DN14783_c0_g1_i1@@W-35D-5@@WT",0.29357354865416213,0.41235463507400744,0.08254227859339504,0.46974623561455586,2E-14,"TCTP","translationally controlled tumor protein \\\\ Encodes a protein homologous to  translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well. \\\\ translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).",3e-16,"AN0641.2","hypothetical protein","","","","","","",4e-28,"TMA19","Protein that associates with ribosomes; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and relocates to the mitochondrial outer surface upon oxidative stress",9e-16,"PHYPADRAFT_71619","hypothetical protein"]
["TRINITY_DN49337_c0_g1_i1@@W-35D-3@@KO",0,0,0.5374958964875782,0,"","","",4e-11,"AN8863.2","hypothetical protein","","","","","","","","","","","",""]
["Contig10394",21.81566372383064,20.67979897385857,11.838961903027052,15.1611003899473,1E-14,"AT1G78780","pathogenesis-related family protein \\\\ pathogenesis-related family protein; Has 199 Blast hits to 198 proteins in 70 species: Archae - 0; Bacteria - 51; Metazoa - 15; Fungi - 40; Plants - 91; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).",5e-20,"AN3877.2","hypothetical protein","","","","","","","","","",3e-26,"PHYPADRAFT_135849","hypothetical protein"]
["TRINITY_DN21184_c0_g1_i1@@W-25D-2@@KO",0.531022742418558,0,0.2986088313819879,0,"","","",5e-14,"AN5197.2","hypothetical protein","","","","","","","","","","","",""]
["Contig19210@@KO",0.1111062968752675,0,3.7486893293492636,0,2e-20,"ROP9","RHO-related protein from plants 9 \\\\ A member of ROP GTPase gene family. \\\\ RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).",5e-24,"AN4743.2","similar to CDC42-like protein CflB","","","","","","",7e-24,"CDC42","Small rho-like GTPase, essential for establishment and maintenance of cell polarity; mutants have defects in the organization of actin and septins",3e-19,"PHYPADRAFT_188969","hypothetical protein"]
["TRINITY_DN27797_c0_g1_i1@@W-35D-3@@KO",0,0,1.969926917475204,0,5e-68,"DES-1-LIKE","fatty acid desaturase family protein \\\\ Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues. \\\\ DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).",2e-53,"AN4405.2","hypothetical protein","","","","","","","","","",4E-70,"PHYPADRAFT_56936","hypothetical protein"]
["Contig13986",14.376268410540115,3.7952508035862427,35.87939136993744,12.000820954703089,"","","",1E-59,"AN2154.2","hypothetical protein","","","","","","",9e-40,"CHO2","Phosphatidylethanolamine methyltransferase (PEMT), catalyzes the first step in the conversion of phosphatidylethanolamine to phosphatidylcholine during the methylation pathway of phosphatidylcholine biosynthesis","","",""]
["TRINITY_DN45680_c0_g1_i1@@W-35D-3@@KO",0,0,0.2839916158597927,0,4E-14,"XRN2","exoribonuclease 2 \\\\ Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing. \\\\ exoribonuclease 2 (XRN2); CONTAINS InterPro DOMAIN/s: 5&apos;-3&apos; exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: 5'-3' exoribonuclease 3 (TAIR:AT1G75660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",2e-18,"AN0707.2","hypothetical protein","","","","","","",1e-16,"RAT1","Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snRNA processing as well as poly (A+) dependent and independent mRNA transcription termination","","",""]
["Contig11268@@KO",0.6057317832640645,0.025321827316077343,9.306219515820876,0,1e-24,"PUX5","serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma \\\\ serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (PUX5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: plant UBX domain containing protein 4 (TAIR:AT4G04210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",8e-23,"AN8228.2","hypothetical protein","","","","","","",6e-20,"SHP1","UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and interacts with Cdc48p; interacts with ubiquitylated proteins in vivo and is required for degradation of a ubiquitylated model substrate",5e-24,"PHYPADRAFT_131713","hypothetical protein"]
["TRINITY_DN10708_c0_g1_i1@@W-35D-3@@KO",0,0,1.1766874009287251,0,4e-12,"NTMC2T6.1","Calcium-dependent lipid-binding (CaLB domain) family protein \\\\ NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G14590.2); Has 5916 Blast hits to 4916 proteins in 346 species: Archae - 2; Bacteria - 105; Metazoa - 3154; Fungi - 722; Plants - 1160; Viruses - 7; Other Eukaryotes - 766 (source: NCBI BLink).",7e-12,"AN9149.2","hypothetical protein","","","","","","",3e-14,"TCB1","Lipid-binding ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; contains three calcium and lipid binding domains; non-tagged protein also localizes to mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact",1E-14,"PHYPADRAFT_197248","hypothetical protein"]
["Contig8042",2.2255498603674537,2.8394651219502918,9.511312422694076,0.6825434517481143,"","","",1e-16,"AN1997.2","hypothetical protein","","","","","","",6e-17,"ZAP1","Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains","","",""]
["TRINITY_DN48281_c0_g1_i1@@W-35D-3@@KO",0,0,2.2649859695432197,0,1e-39,"APC6","anaphase promoting complex 6 \\\\ anaphase promoting complex 6 (APC6); FUNCTIONS IN: binding; INVOLVED IN: regulation of DNA endoreduplication, phloem or xylem histogenesis, cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-3 (InterPro:IPR011716), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 10888 Blast hits to 7341 proteins in 968 species: Archae - 487; Bacteria - 4678; Metazoa - 2008; Fungi - 460; Plants - 439; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink).",6e-28,"AN8002.2","hypothetical protein","","","","","","",1e-24,"CDC16","Subunit of the anaphase-promoting complex/cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation",1E-42,"PHYPADRAFT_153829","hypothetical protein"]
["Contig17447",9.096532561192115,6.2014627713981145,5.2016387750864075,6.130288320777532,4e-74,"PLDBETA2","phospholipase D beta 2 \\\\ member of C2-PLD subfamily \\\\ phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).",5e-18,"AN3443.2","hypothetical protein","","","","","","",2E-12,"SPO14","Phospholipase D; catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis; participates in transcription initiation and/or early elongation of specific genes; interacts with foot domain of RNA polymerase II; deletion results in abnormal CTD-Ser5 phosphorylation of RNA polymerase II at specific promoter regions",4e-67,"PHYPADRAFT_88138","hypothetical protein"]
["Contig4284",48.211124225200535,25.166492031668525,75.86030095541247,59.860905430341376,5e-11,"AT3G06470","GNS1/SUR4 membrane protein family \\\\ GNS1/SUR4 membrane protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane protein family (TAIR:AT3G06460.1); Has 2217 Blast hits to 2209 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 1418; Fungi - 362; Plants - 108; Viruses - 14; Other Eukaryotes - 315 (source: NCBI BLink).",2e-15,"AN0981.2","hypothetical protein","","","","","","",2E-14,"ELO1","Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, FEN1, that arose from the whole genome duplication",3E-11,"PHYPADRAFT_198836","hypothetical protein"]
["TRINITY_DN9615_c0_g1_i1@@W-35D-3@@KO",0,0,1.1797151718682761,0,"","","",1e-12,"AN6590.2","hypothetical protein","","","","","","","","","","","",""]
["TRINITY_DN43453_c0_g1_i1@@W-35D-3@@KO",0.0812972903965372,0,1.142893088216239,0,"","","",1e-12,"AN3408.2","hypothetical protein","","","","","","",4e-13,"PTR2","Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p",3e-18,"PHYPADRAFT_183911","hypothetical protein"]
["Contig11715@@KO",0,0,4.540338007596934,0,2E-12,"XBAT31","XB3 ortholog 1 in Arabidopsis thaliana \\\\ XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).",8e-13,"AN8767.2","hypothetical protein","","","","","","","","","","","",""]
["TRINITY_DN44459_c0_g1_i1@@W-25D-2@@KO",1.096998880540616,1.1556369139922182,0.46265469571082685,0.8776524604646639,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21008_c0_g1_i1@@W-35D-3@@KO",0.4561205871721508,0.048535521640289875,2.9729438102375143,0.11058141048916818,"","","","","","","","","","","","","","","","","",""]
["Contig12419",38.68412442111844,61.06274506184294,98.82779534813902,61.095394088237555,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45908_c0_g1_i1@@W-35D-3@@KO",0,0,0.4061080106795036,0,"","","","","","","","","","","","","","","","","",""]
["Contig9908",14.371454773174632,1.3213528286239236,148.26197764636987,0,"","","","","","","","","","","","","","","","","",""]
["Contig9948",6.80648973556672,2.9549041216918366,3.638799653212366,4.559240565577559,"","","","","","","","","","","","","","","","","",""]
["Contig14846@@KO",0,0,1.1625229313344567,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52736_c0_g2_i1@@W-35D-3@@KO",0.07282597610311652,0.17048611803059804,0.20476034151907743,0.38842882003758233,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN41009_c0_g1_i1@@W-35D-3@@KO",0,0,1.0943030227890815,0.1729903801814083,"","","","","","","","","","","","","","","","","",""]
["Contig13955@@KO",0.18412799907091076,0,13.58966253867319,0,"","","","","","","","","","","","","","","","","",""]
["Contig9318@@KO",1.7697959541791621,0.8018912271004414,0.8828435014771817,0.7612488403239838,"","","","","","","","","","","","","","","","","",""]
["Contig12347",2.7132034927551514,3.0512724193874066,1.8323473778356976,2.8375094895317554,"","","","","","","","","","","","","","","","","",""]
["Contig9821",1.240768557615873,0.33515167476279456,1.0734132440867936,0.7635963037082428,"","","","","","","","","","","","","","","","","",""]
["Contig9831",4.5952309961678175,4.6424813572182915,2.2843575600722077,7.804795821974909,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10556_c0_g1_i1@@W-35D-3@@KO",0.13210809689437295,0,2.228641522021666,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4602_c0_g1_i1@@W-35D-3@@KO",0,0.16684085563849643,1.0019112105579857,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23335_c0_g1_i1@@W-35D-5@@WT",0,0.3240870294830857,0,0.36919352703252634,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21547_c0_g1_i1@@W-25D-2@@KO",1.8878850029220764,0.5261371381131008,2.654025380996756,2.757079046791657,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN11728_c0_g1_i1@@W-25D-4@@WT",0.9538370769480512,1.4354609466255541,1.3409226767719458,0.7267771947244073,"","","","","","","","","","","","","","","","","",""]
["Contig22791@@KO",2.676651697449626,0.23645510542705322,28.186167874084425,0.5387299485369732,"","","","","","","","","","","","","","","","","",""]
["Contig15227@@KO",0.3209737465285506,0.28177566730057174,4.850734572005182,0,"","","","","","","","","","","","","","","","","",""]
["Contig18646@@KO",0.12763315399515265,0.1493950518824828,7.177166609947044,0.08509394253400644,"","","","","","","","","","","","","","","","","",""]
["Contig12150",2.588632423301687,8.03609565444228,0,3.151570198941293,"","","","","","","","","","","","","","","","","",""]
["Contig12110",6.599562494494346,3.7104247820608456,5.652278263952173,5.504447364755562,"","","","","","","","","","","","","","","","","",""]
["Contig14336@@KO",1.3098989051195382,0,5.303466161231728,0.3493276117327108,"","","","","","","","","","","","","","","","","",""]
["Contig9515",0.8620917904143793,0.37176684900389567,0.8930123795046675,0.6050134762365484,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26878_c0_g1_i1@@W-35D-5@@WT",0.4234344213161661,0.33042097794203856,0.19842410945252617,0.37640903570417183,"","","","","","","","","","","","","","","","","",""]
["Contig9553",2.07379763185323,2.299630131118016,1.6878544524462995,1.8920005812284,"","","","","","","","","","","","","","","","","",""]
["Contig9580",6.321671295894722,3.371941503430665,2.7561346985174064,3.574495593443726,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53331_c0_g1_i1@@W-35D-3@@KO",0.07751602107576804,0,1.3076823241916036,0,2e-11,"AT1G76380","DNA-binding bromodomain-containing protein \\\\ DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 6842 Blast hits to 5628 proteins in 259 species: Archae - 0; Bacteria - 8; Metazoa - 4078; Fungi - 1212; Plants - 647; Viruses - 2; Other Eukaryotes - 895 (source: NCBI BLink).","","","","","","","","","","","","",7e-11,"BRD1502","single bromodomain-containing protein"]
["TRINITY_DN21692_c1_g1_i1@@W-35D-3@@KO",0,0.1310584499072427,1.7314682625870308,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29730_c0_g2_i1@@W-25D-4@@WT",0,0.16101466702889813,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig16376@@WT",0.8253610625019873,2.7372493394912683,1.1603086019414388,2.201096646879633,"","","","","","","","","","","","","","","","","",""]
["Contig12700",0.9915664938525017,0.4642528156897292,0.27879268467700474,1.45438594230319,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55238_c0_g1_i1@@W-35D-3@@KO",0,0,0.4571572352864956,0,"","","","","","","","","","","","","","","","","",""]
["Contig20586@@KO",0.3025939649535917,0.035418729129960136,7.869760681813006,0,"","","","","","","","","","","","","","","","","",""]
["Contig12779",9.498767400346146,5.8714831166572345,7.9521149874434816,5.436329218370818,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42757_c0_g1_i1@@W-35D-3@@KO",0,0,1.0324779932529753,0,"","","","","","","","","","","","","","","","","",""]
["Contig10172@@KO",1.1035175496100422,0.17222281872360923,21.201734004065763,0,"","","","","","","","","","","","","","","","","",""]
["Contig12606@@KO",0.3411925652075144,0,3.9571548284715408,0,"","","","","","","","","","","","","","","","","",""]
["Contig9764",3.3815836635176697,2.2092030539718146,1.437224357214214,1.4680635530458535,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33752_c0_g1_i1@@W-25D-2@@KO",0.3445841414024201,0.20166846963858018,0.36331730577689186,0.22973672755701938,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45572_c0_g1_i1@@W-35D-3@@KO",0,0,1.2183240320385107,0,"","","","","","","","","","","","","","","","","",""]
["Contig12613",1.2312763391423087,13.80238842449358,1.3980767580769797,3.0310183334080194,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47126_c0_g1_i1@@W-35D-3@@KO",0,0,0.9064910952667491,0,"","","","","","","","","","","","","","","","","",""]
["Contig12679",22.726539463747663,9.807196254428199,72.3917018207115,8.966500552174606,"","","","","","","","","","","","","","","","","",""]
["Contig9707",8.761805019124695,5.694311501421693,5.397864741507876,4.542490967614379,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN11189_c0_g1_i1@@W-35D-5@@WT",1.1347026063857106,7.055920965137067,0.8972926586208344,5.957550867065783,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39702_c2_g3_i1@@W-35D-3@@KO",6.155722130498805,3.9558478083422886,2.036196153824809,1.4484932669228785,"","","","","","","","","","","","","","","","","",""]
["Contig9682",4.603967176768897,2.6944798185617174,2.09399443006619,2.7083806397151737,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17315_c0_g1_i1@@W-25D-2@@KO",3.1136375411751613,1.8222618005066915,0.9119191856575679,0.8649519009070414,"","","","","","","","","","","","","","","","","",""]
["Contig12505",0.9609798661187452,0.6135437917028578,1.9650387613524367,2.679258267245118,"","","","","","","","","","","","","","","","","",""]
["Contig12558",6.158503958681601,3.7016880236925305,2.5739240113489665,3.551065012891598,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33157_c0_g1_i1@@W-25D-4@@WT",5.548820851916256,12.531680846470698,15.504176709523025,39.696052904305716,"","","","","","","","","","","","","","","","","",""]
["Contig9606",4.062323979501968,2.022746754550533,4.84066244872444,2.2698809170946217,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53060_c0_g1_i1@@W-35D-3@@KO",0.24903135506525476,0,0.8752327816368611,0,"","","","","","","","","","","","","","","","","",""]
["Contig9827@@WT",4.027086968527354,4.902268115117754,5.434902745153208,8.699036701538699,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35396_c2_g1_i1@@W-35D-3@@KO",2.483725419566165,1.3865151883044007,1.98756566073302,1.7832958944626658,"","","","","","","","","","","","","","","",7e-11,"ARP1504","actin-related protein Arp5"]
["Contig22046@@KO",0,0.11659682784851245,2.3106145435213135,0,"","","","","","","","","","","","","","","","","",""]
["Contig5540",16.96640099607958,29.43166688311324,15.615139002183728,18.5543146923586,"","","","","","","","","","","","","","","","","",""]
["Contig5582",2.0889082515115187,1.5046611653133126,2.4848388786941196,1.0713001294299822,"","","","","","","","","","","","","","","","","",""]
["Contig13491@@KO",2.6671458063456273,1.0858794672064853,1.7932512514393781,2.2678560456253134,"","","","","","","","","","","","","","","","","",""]
["Contig22433@@KO",0,0.11372112133206932,0.9560838816445711,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36139_c0_g1_i2@@W-35D-3@@KO",0.27808985623973026,0.04438706544408073,8.192056283106089,0.016854955361899175,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15177_c0_g1_i1@@W-35D-5@@WT",0.22451531492929705,0.5255919182808593,0,0.5987439065346153,"","","","","","","","","","","","","","","","","",""]
["Contig16741",0.6878008854183226,0.5750523822460648,0.41439592926479957,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44215_c0_g1_i1@@W-35D-3@@KO",0,0,1.0247585316211771,0,"","","","","","","","","","","","","","","","","",""]
["Contig10948@@KO",0.04969203644650726,0,2.8641792037602603,0,1e-11,"AT3G52140","tetratricopeptide repeat (TPR)-containing protein \\\\ tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11101 Blast hits to 3590 proteins in 410 species: Archae - 113; Bacteria - 3115; Metazoa - 4880; Fungi - 1415; Plants - 408; Viruses - 9; Other Eukaryotes - 1161 (source: NCBI BLink).","","","","","","","","","","","","",8e-12,"PHYPADRAFT_203627","hypothetical protein"]
["Contig16753",1.677719916768058,0.27086579500188473,30.498765822058846,0.3085649504971449,"","","","","","","","","","","","","","","","","",""]
["Contig20439@@KO",0.07419769825574371,0,2.3469426987043227,0,"","","","","","","","","","","","","","","","","",""]
["Contig9488@@WT",0,1.7727245865123349,0.11828388660568065,0.4487672775191485,"","","","","","","","","","","","","","","","","",""]
["Contig5817",1.64411088546454,0.8125402885058646,1.129980130895752,0,"","","","","","","","","","","","","","","","","",""]
["Contig16603",3.1156467099425122,2.8613944975876646,1.8193998266061833,0.8308896357828262,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1621_c0_g1_i1@@W-35D-5@@WT",7.714312203498687,2.881796597392211,5.537836509265958,9.119126733047723,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8880_c0_g1_i1@@W-35D-3@@KO",0,0,2.1645350823019225,0,"","","","","","","","","","","","","","","","","",""]
["Contig16645",3.03908400276467,4.590010870054563,0.964736224464884,0.9150486625885353,"","","","","","","","","","","","","","","","","",""]
["Contig16666",8.684497650296645,6.989930839254519,5.861264775983591,7.574361990732856,"","","","","","","","","","","","","","","","","",""]
["Contig24910@@KO",16.155369352007828,11.360608551569294,18.48613054393694,22.293260294534146,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30158_c0_g1_i1@@W-35D-3@@KO",0.24343514483906925,0,1.1977904809367381,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30819_c0_g1_i1@@W-35D-5@@WT",0.4037092153542329,0.7875717409022193,0.18918075031653894,0.35887445329559237,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34731_c0_g1_i1@@W-25D-4@@WT",0.24412087764143284,0.8572330160130069,0.1715949340899311,0.3255142928483965,"","","","","","","","","","","","","","","","","",""]
["Contig16560",2.2355007281868096,1.74444093255728,1.3618411364145004,0.6955313995943812,"","","","","","","","","","","","","","","","","",""]
["Contig16556",4.46880575277319,1.8681259710535145,2.468059733411348,2.340945328863698,"","","","","","","","","","","","","","","","","",""]
["Contig16552",6.937437647332459,6.315784969735813,4.334570889082376,6.75431817308045,"","","","","","","","","","","","","","","","","",""]
["Contig5169",3.1039724771743784,0.7266421219785518,9.250884483960037,0.827776317773501,"","","","","","","","","","","","","","","","","",""]
["Contig17321@@KO",0.4412571871828343,0.10329861530367193,26.30190374665624,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52036_c0_g1_i1@@W-35D-3@@KO",1.0900995165120586,0.3189913214723454,1.532483059167938,0.5450828960433054,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46357_c0_g1_i1@@W-35D-3@@KO",0,0,0.8149324629020138,0,"","","","","","","","","","","","","","","","","",""]
["Contig12084",3.73910961509251,1.9059564969809029,1.102172054036231,0.9247822550825181,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54581_c0_g1_i1@@W-35D-3@@KO",0.12275199938060716,0.07184082169136391,1.2079700034376168,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35158_c0_g1_i1@@W-25D-2@@KO",0.7197916242749888,0.16850372130931202,1.011897036576836,0.19195610292554943,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2006_c0_g1_i1@@W-35D-3@@KO",0,0,0.9493434015884499,0,"","","","","","","","","","","","","","","","","",""]
["Contig5062",7.193364200857239,2.9402678327016183,3.21034000537157,3.7301193175875205,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25552_c4_g1_i2@@W-25D-4@@WT",1.758841378578958,1.3568902060045982,0.9553278849010464,0.7995219600635199,"","","","","","","","","","","","","","","","","",""]
["Contig16766@@KO",0.39920101641113703,0.04247874381415655,14.285206405811683,0,"","","","","","","","","","","","","","","","","",""]
["Contig159@@WT",5.999030086875466,6.427726084747866,3.5680416273758304,4.122661051863211,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14920_c0_g1_i1@@W-35D-3@@KO",0,0,3.9945050230770844,0,"","","","","","","","","","","","","","","","","",""]
["Contig10203@@WT",5.800965682696523,2.4812127725548496,3.5687692383421354,2.757608255844905,"","","","","","","","","","","","","","","","","",""]
["Contig15441@@KO",0.8764896238959157,0.12824177020000738,14.362669530668917,0.03652262135309126,"","","","","","","","","","","","","","","","","",""]
["Contig4542@@KO",1.4088059515120126,0.8494911743248764,0.4801276973550781,0.8538736992205473,"","","","","","","","","","","","","","","","","",""]
["Contig5326",1.9029653006930267,0.43818246318879406,35.65505536527391,0.3327791906729467,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23525_c0_g1_i1@@W-25D-2@@KO",3.9849463798924067,1.8114150040751043,1.8492418343441683,3.7143505916093815,"","","","","","","","","","","","","","","","","",""]
["Contig20440@@KO",0.20295763832016078,0,3.4951918951924488,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45111_c0_g1_i1@@W-35D-3@@KO",0,0,0.3669650698911177,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28660_c0_g1_i1@@W-35D-5@@WT",0.8422961167001921,0.21909123159439706,0.5262738799302422,0.9983375720188402,"","","","","","","","","","","","","","","","","",""]
["Contig20564@@KO",0.0589543616072848,0,1.7404629029121583,0.15722118906283095,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2601_c0_g1_i1@@W-35D-3@@KO",0.12633077487275315,0.1478706125775595,1.2431877877943986,0,"","","","","","","","","","","","","","","","","",""]
["Contig5216",2.9908917290160395,2.7323701071570596,1.9484980310380224,0.8754361663725815,"","","","","","","","","","","","","","","","","",""]
["Contig5268",0.14312619580959315,0,16.801000276666496,0.4294046926716048,"","","","","","","","","","","","","","","",2e-11,"PHYPADRAFT_195710","hypothetical protein"]
["Contig17250",0.8650562860161481,0.736401017990605,0.5527785989285439,0.6291700941625086,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25755_c0_g2_i1@@W-35D-3@@KO",0.5603205488968233,0.4372381044319217,1.1815642552097625,0.24904649560599298,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50411_c0_g1_i1@@W-35D-3@@KO",0,0,0.7217559431507765,0,"","","","","","","","","","","","","","","","","",""]
["Contig1207",0.6504721999510465,1.347056885247537,0.49239423927653436,0.5337532284581097,"","","","","","","","","","","","","","","","","",""]
["Contig18350@@KO",1.1613120477414896,0.04247874381415655,3.2651900356140993,0,"","","","","","","","","","","","","","","","","",""]
["Contig21567@@KO",1.6532081523006672,0.40738650694058565,0.3669650698911177,0.4640866424143805,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26195_c0_g1_i2@@W-25D-4@@WT",3.3197486284102107,2.147403270960002,1.5351865323065912,2.9122372470055633,"","","","","","","","","","","","","","","","","",""]
["Contig17143",2.5371268408188974,0.31260166480186696,2.2526792580064914,1.3354111012463106,"","","","","","","","","","","","","","","","","",""]
["Contig17166",1.2195939541109662,0.3358915239344564,0.201709276827568,0.8609421901081348,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25474_c0_g1_i3@@W-25D-4@@WT",1.1403014679303771,1.5872427347229932,0.9964954742846994,1.5204943942260625,"","","","","","","","","","","","","","","","","",""]
["Contig17173",2.1575828604823735,1.473183986716682,2.022114575997528,1.3785395233958284,"","","","","","","","","","","","","","","","","",""]
["Contig1005",46.41722028479417,39.51661410217674,31.358792979144525,53.10627191999948,"","","","","","","","","","","","","","","","","",""]
["Contig1045",17.062860124998792,18.324950704283463,5.5228491303504885,6.489363084423546,"","","","","","","","","","","","","","","","","",""]
["Contig1084",16.385844623201216,18.007596216981916,20.476034151907744,12.866704663744915,"","","","","","","","","","","","","","","","","",""]
["Contig17203",0.5391160905922778,0.31551863212505704,0.18947496610241224,0.4492907230216981,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20357_c0_g1_i1@@W-35D-5@@WT",6.098066848796821,20.24666838113716,8.407919571578356,15.793389675344052,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33092_c0_g1_i1@@W-35D-3@@KO",0,0,3.4206230290209083,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5865_c0_g1_i1@@W-35D-3@@KO",0.14395832485499777,0,1.2142764438922033,0,"","","","","","","","","","","","","","","","","",""]
["Contig17056",7.056269175404031,4.410823232400005,4.738702991587098,4.152298146923162,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10245_c0_g1_i1@@W-35D-3@@KO",0.09481718989355432,0,1.1996626136046604,0,"","","","","","","","","","","","","","","","","",""]
["Contig1396",1.2854820009301655,0.6269421522138803,1.4306648089450993,0.42852005177199287,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8266_c1_g1_i1@@W-35D-3@@KO",0.2417375496867745,0,0.42479917435094516,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN3376_c0_g1_i1@@W-35D-5@@WT",0,0,0,0.7267771947244073,"","","","","","","","","","","","","","","","","",""]
["Contig6890@@KO",0.9779668839541775,0,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN12626_c0_g1_i1@@W-35D-3@@KO",0,0,1.1944353255279516,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27193_c0_g1_i1@@W-35D-3@@KO",0.07432496703491309,0,1.776287182217383,0.09910598109878281,"","","","","","","","","","","","","","","","","",""]
["Contig9104@@WT",3.353029316414323,0.150951250339592,9.97140204793424,0.6878427021498854,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26241_c0_g1_i1@@W-35D-3@@KO",0,0,1.8534341258192353,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23968_c0_g1_i1@@W-25D-2@@KO",0.9944924277687878,0.24944075465952253,0.2995878767307813,0.18943864583800124,"","","","","","","","","","","","","","","","","",""]
["Contig17974@@KO",0.11617012273821536,0,1.6331421340998804,0,"","","","","","","","","","","","","","","","","",""]
["Contig5967",2.628190941637354,0.8676762383439068,2.0842246271265346,0.8087233014390566,"","","","","","","","","","","","","","","","","",""]
["Contig5971",4.5574579622131095,3.000667747095653,3.4537534186794265,2.0889618957649763,"","","","","","","","","","","","","","","","","",""]
["Contig10657@@WT",4.324320434391776,4.028645996843205,2.109114923080925,2.5888662190895886,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN671_c0_g1_i1@@W-35D-3@@KO",0,0,0.7894108198953633,0,"","","","","","","","","","","","","","","","","",""]
["Contig14950@@KO",8.955770610342544,5.778376046402419,4.523750133873981,4.325223838988423,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25463_c0_g1_i1@@W-35D-3@@KO",4.940068248688604,3.469420268391404,13.492839442771782,4.328703910597976,"","","","","","","","","","","","","","","","","",""]
["Contig16885@@KO",0.1813031622650809,0,2.123995871754726,0.08058408226023762,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34192_c1_g1_i1@@W-35D-3@@KO",0.1558685459760947,0,2.9581608691582546,0,"","","","","","","","","","","","",3e-12,"BRF1","TFIIIB B-related factor, one of three subunits of RNA polymerase III transcription initiation factor TFIIIB, binds TFIIIC and TBP and recruits RNA pol III to promoters, amino-terminal half is homologous to TFIIB","","",""]
["Contig5894",2.3373814321892374,1.4381081775091422,3.1174266379961892,1.278645355033812,"","","","","","","","","","","","","","","","","",""]
["Contig17618",1.653501118480412,0,22.835029556726294,0.12969424687001208,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31324_c0_g1_i1@@W-25D-2@@KO",0.7303054345172079,0,0.17111292584810545,0.3245999268572493,"","","","","","","","","","","","","","","","","",""]
["Contig17451",0.18839763383197533,0.1102600437263107,0.529706100886309,0.6280302932672867,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9856_c0_g1_i1@@W-35D-3@@KO",0,0,0.5262738799302422,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25540_c0_g2_i2@@W-25D-4@@WT",2.491710641003545,2.418607410770686,1.9650387613524367,1.539687170590767,"","","","","","","","","","","","","","","","","",""]
["Contig18650@@KO",3.2985883293764537,1.5210036020376883,2.8806969615674127,1.3994861898412894,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42023_c0_g1_i1@@W-25D-2@@KO",0.5284323875774919,0.10308865876850186,0.12381341789009255,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13903_c0_g1_i1@@W-25D-2@@KO",0.7514125280003642,0,0,0.1669907138167352,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39235_c0_g1_i1@@W-25D-2@@KO",0.40245934162248603,0,0.3771901027983005,0.1788816934383603,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18041_c0_g1_i1@@W-35D-5@@WT",2.7032467826899946,2.047397509193145,2.7943211744002543,1.166177351901824,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38213_c0_g2_i1@@W-25D-2@@KO",0,0,0.17863988739567607,0,"","","","","","","","","","","","","","","","","",""]
["Contig17405",1.568897536911105,0.8744762088638434,1.9955307421320436,0.9961859824239719,"","","","","","","","","","","","","","","","","",""]
["Contig17439",3.0541995264390716,1.4523239239721097,1.0734132440867936,1.5271926074164857,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35915_c0_g1_i3@@W-35D-3@@KO",0.2900365179474855,0.10184662673514641,1.3047646929461962,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28521_c0_g1_i1@@W-25D-4@@WT",0.3610954648446194,0.9862148355520011,0.16921167111645982,0.9629797830098396,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31924_c2_g1_i2@@W-25D-2@@KO",11.218100927747493,19.191207610741642,7.192097770924351,5.506655373683578,"","","","","","","","","","","","","","","","","",""]
["Contig1916",14.360712617986243,11.089445134268761,10.444780251653516,12.699365147632637,"","","","","","","","","","","","","","","","","",""]
["Contig1930",3.126743652292555,1.0369615657723987,1.5384729207942711,1.806672834029284,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10134_c0_g1_i1@@W-35D-3@@KO",0.11617012273821536,0,0.4899426402299641,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16606_c0_g1_i1@@W-25D-2@@KO",1.1516665988399821,1.179526049165184,0.505948518288418,1.0557585660905215,"","","","","","","","","","","","","","","","","",""]
["Contig8453@@KO",4.35503015176238,2.843372642760315,4.337971932258334,2.3053152381144644,"","","","","","","","","","","","","","","","","",""]
["Contig1906",4.094310782490172,0.6389873400201942,7.098895934712582,1.3648532357619774,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53043_c0_g1_i1@@W-35D-3@@KO",0,0,1.0238017075953871,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15827_c2_g1_i1@@W-35D-3@@KO",0,0,0.8332003258622034,0.08780970665743218,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1823_c0_g1_i1@@W-35D-3@@KO",0,0,0.7962902170186344,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10773_c0_g1_i1@@W-25D-2@@KO",1.2609682899335917,0.4025366675722454,0.8057698624593325,1.2228314704886851,"","","","","","","","","","","","","","","","","",""]
["Contig12910",2.4643481960959805,1.2018867325616804,1.347277760548116,0.6389439318548699,"","","","","","","","","","","","","","","","","",""]
["Contig12937",18.931554562620462,24.509081604658356,16.494083341096452,21.82856728579812,"","","","","","","","","","","","","","","","","",""]
["Contig12901",28.528175638855448,24.95818410592168,22.257842893011254,24.640953271134126,4E-35,"AT1G26550","FKBP-like peptidyl-prolyl cis-trans isomerase family protein \\\\ FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).","","","","","","","","","","","","",2e-37,"PHYPADRAFT_194479","hypothetical protein"]
["TRINITY_DN28188_c0_g1_i1@@W-25D-2@@KO",3.654460126138317,0.1222159520821757,5.137510978475648,0.2784519854486283,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53707_c0_g1_i1@@W-35D-3@@KO",0,0,1.4418035882112552,0.11396210449820587,"","","","","","","","","","","","","","","","","",""]
["Contig1726@@WT",2.7658376030651697,7.848297116302192,2.710005100279086,5.252616998235489,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27488_c1_g1_i1@@W-35D-3@@KO",3.1208250701252425,0.4214926879288331,60.40997277974887,0,"","","","","","","","","","","","","","","","","",""]
["Contig1640",4.89390559412943,2.148125087185535,2.149983585950313,2.3111514792236147,"","","","","","","","","","","","","","","","","",""]
["Contig24427@@KO",7.162954935285103,6.8833770154853955,5.656504434464514,4.716635671884928,"","","","","","","","","","","","","","","","","",""]
["Contig1986@@WT",5.12573628081738,5.166401610746518,5.671278352862728,3.2275116495181915,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38919_c0_g1_i1@@W-25D-2@@KO",0.4455676687028723,0.26076925508536203,0.46979075785546687,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8486_c0_g1_i1@@W-25D-4@@WT",0.1393294398114287,0.9785135713331752,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13268_c0_g1_i1@@W-35D-3@@KO",0,0,1.0019112105579857,0,"","","","","","","","","","","","","","","","","",""]
["Contig1557",2.3518717776064024,1.3347268451079715,1.1021023316137843,5.701853978347734,"","","","","","","","","","","","","","","","","",""]
["Contig11767@@KO",0,0.14207176502549837,3.2420387407187263,0,"","","","","","","","","","","","","","","","","",""]
["Contig24699@@KO",0.11970015409213904,0,1.1779376000372341,0,"","","","","","","","","","","","","","","","","",""]
["Contig15977@@KO",1.6366197327489944,0.09122233833471748,28.047747500167155,0.10391868161976686,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5971_c0_g1_i1@@W-35D-3@@KO",0.9784522273209041,0.8180583889371439,1.5720310090819494,0.3727663676167121,"","","","","","","","","","","","","","","","","",""]
["Contig6004@@KO",18.13447173192503,14.079215430655054,9.514924528653905,8.24009865257995,"","","","","","","","","","","","","","","","","",""]
["Contig3522@@WT",1.095931761007016,1.6774971633069058,0.23702802179737562,0.4496403656077072,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28269_c3_g1_i1@@W-35D-3@@KO",0,0,1.0152700266987589,0,6e-17,"GTB1","global transcription factor group B1 \\\\ Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. \\\\ global transcription factor group B1 (GTB1); FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt6 (TAIR:AT1G63210.1); Has 154550 Blast hits to 61131 proteins in 3458 species: Archae - 353; Bacteria - 39994; Metazoa - 50717; Fungi - 13479; Plants - 12820; Viruses - 1975; Other Eukaryotes - 35212 (source: NCBI BLink).","","","","","","","","","","","","",5e-11,"GTB1501","transcription elongation factor SPT6"]
["Contig16532@@KO",2.7020749070005534,2.817756673005717,2.1410456345347977,1.4411942330759502,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52457_c0_g1_i1@@W-35D-3@@KO",0.7045765167699891,1.0721220511924192,2.080065420553555,0.5636954827374671,"","","","","","","","","","","","","","","","","",""]
["Contig1731",4.579989149161679,4.803917347801099,5.142548247794674,5.4725275245857725,"","","","","","","","","","","","","","","","","",""]
["Contig1754",0.6891682828048402,0.30250270445787025,0.7266346115537837,0.9189469102280775,"","","","","","","","","","","","","","","","","",""]
["Contig1782",4.313161816821972,0.584776557810564,3.7458079386272427,0.44411058401683606,"","","","","","","","","","","","","","","","","",""]
["Contig10834@@KO",0.6713324135139404,0.28574433867100235,0.8579746704496555,0.4068928660604956,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4363_c0_g1_i1@@W-35D-3@@KO",0,0,1.0250322384939392,0,"","","","","","","","","","","","","","","","","",""]
["Contig6012",1.9685335686110614,1.4991020723380173,1.4003724506189779,1.6761224466181115,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43905_c0_g1_i1@@W-25D-2@@KO",0.9247566782606106,0,0.18572012683513883,0.17615483835545845,"","","","","","","","","","","","","","","","","",""]
["Contig7207@@WT",4.09506065625986,4.570339394897186,1.6065811411496844,0.5079453800491461,"","","","","","","","","","","","","","","","","",""]
["Contig11161",9.13235623298892,52.488909187850695,15.760296344684223,31.49279813622295,"","","","","","","","","","","","","","","","","",""]
["Contig11172",30.246715213411164,18.63273331519096,19.268788494703173,18.160699811717095,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39339_c4_g1_i1@@W-35D-3@@KO",0,0,1.6583357967856316,0.052430841180209055,"","","","","","","","","","","","","","","","","",""]
["Contig24666@@KO",0.04664311709510692,0,1.5081513851929897,0,"","","","","","","","","","","","","","","",5e-12,"PHYPADRAFT_231106","hypothetical protein"]
["TRINITY_DN5843_c0_g1_i1@@W-35D-3@@KO",0,0,0.7911195013237082,0,"","","","","","","","","","","","","","","","","",""]
["Contig11043",7.886155357467617,13.796530715969286,13.23228645364723,12.663843721773233,"","","","","","","","","","","","","","","","","",""]
["Contig11029",1.2251453271513872,2.64164688094286,0.5438946571600495,1.7196067553747134,"","","","","","","","","","","","","","","","","",""]
["Contig12336@@KO",1.2825378032536163,2.037363175830772,1.1590820600789213,4.764001463515909,"","","","","","","","","","","","","","","","","",""]
["Contig11077",6.666377812516051,4.106851831101451,21.456313924564867,4.7252287328256095,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53987_c0_g1_i1@@W-35D-3@@KO",0,0,0.7507278366434486,0,"","","","","","","","","","","","","","","","","",""]
["Contig6298",1.595775991947893,0.7184082169136391,1.8119550051564255,0.900236057771238,"","","","","","","","","","","","","","","","","",""]
["Contig5759@@KO",1.7027265821941402,1.2370639052220223,0.9905073431207404,0.7829103926909264,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29108_c0_g3_i1@@W-25D-2@@KO",1.1167900974575857,0.9150446927802072,1.099003637148141,0.8934863966070676,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN11_c0_g1_i1@@W-25D-2@@KO",7.585878200449298,5.919531260001401,5.978513154565636,5.517337748809691,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36975_c0_g1_i2@@W-35D-3@@KO",0.7403364304351996,1.070464344116745,1.7754470818651664,1.0452443875885695,"","","","","","","","","","","","","","","","","",""]
["Contig6143",0.5959139301954426,0.19929123816936312,0.6582300762487042,0.3973001069392265,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9171_c0_g1_i1@@W-25D-2@@KO",0.9098468405533717,0.2662447250084143,0.6395401742984308,0.1516503595291086,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39637_c0_g1_i1@@W-25D-2@@KO",0.33246641264466237,0.259435397003084,0,0.1477718337099498,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40013_c0_g1_i1@@W-25D-2@@KO",2.216958202766966,0.7077156294991104,2.40831494705287,1.3436927204788458,5e-12,"emb1997","para-aminobenzoate (PABA) synthase family protein \\\\ embryo defective 1997 (emb1997); FUNCTIONS IN: oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Para-aminobenzoate synthase, component I (InterPro:IPR005802), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase 2 (TAIR:AT2G29690.1); Has 26955 Blast hits to 26481 proteins in 3128 species: Archae - 525; Bacteria - 17829; Metazoa - 510; Fungi - 766; Plants - 261; Viruses - 0; Other Eukaryotes - 7064 (source: NCBI BLink).","","","","","","","","","","","","",8e-13,"PHYPADRAFT_190627","hypothetical protein"]
["TRINITY_DN34470_c0_g1_i1@@W-35D-3@@KO",0.05121921487157722,0,4.320297985952165,0,"","","","","","","","","","","","","","","","","",""]
["Contig6113",10.055516175866112,4.916589276692309,6.6207705475865355,5.722112348896067,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29722_c0_g1_i1@@W-25D-4@@WT",0,0.5133564788876813,0.1233121489917521,0.2339222144963173,"","","","","","","","","","","","","","","","","",""]
["Contig11575",0.24903135506525478,0,1.0502793379642335,0.7748113196630894,"","","","","","","","","","","","","","","","","",""]
["Contig11503",0.30493635314112827,0.9280155685902011,0.3858168996603306,0.4066065234383559,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43173_c0_g1_i1@@W-35D-3@@KO",0,0.12104921268282319,1.163077834881633,0.137896866302125,"","","","","","","","","","","","","","","","","",""]
["Contig1802@@KO",6.183712472470292,5.268879739030628,1.150568340854837,1.4550796301512792,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23639_c0_g1_i1@@W-25D-2@@KO",0.9568460267176034,0.47999640486532724,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig11428",96.9260272807774,68.81970339520353,34.01674229941624,16.86659259899338,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46316_c0_g1_i1@@W-35D-3@@KO",0,0,1.1466579125068337,0,"","","","","","","","","","","","","","","","","",""]
["Contig18299@@KO",0,0,1.89517071650435,0,1E-10,"XPO1B","exportin 1B \\\\ Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes. \\\\ exportin 1B (XPO1B); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: pollen germination, protein import into nucleus, docking, pollen tube growth, embryo sac development, pollen development; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1A (TAIR:AT5G17020.1); Has 1366 Blast hits to 1341 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 258; Plants - 127; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).","","","","","","","","","",1e-12,"CRM1","Major karyopherin, involved in export of proteins, RNAs, and ribosomal subunits from the nucleus; exportin",8E-14,"PHYPADRAFT_151199","hypothetical protein"]
["Contig8110@@KO",1.3412117265657293,0.7245660016300416,1.087789314320099,0.5502741617199083,"","","","","","","","","","","","","","","","","",""]
["Contig2803@@KO",1.9136920534352069,3.5199736356790665,0.7686586952924358,0.7290698672629701,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26533_c1_g2_i1@@W-25D-4@@WT",0.38602633212787824,1.1296129201359224,0.27134165524243,0.257366534434701,"","","","","","","","","","","","","","","","","",""]
["Contig11324",4.199360637472589,6.002836685888681,3.761549327048575,8.869985308341061,"","","","","","","","","","","","","","","","","",""]
["Contig19068@@KO",0.37390517932137,0,10.104029604154476,0,1e-15,"AT4G24690","ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein \\\\ ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Zinc finger, ZZ-type (InterPro:IPR000433); Has 643 Blast hits to 609 proteins in 134 species: Archae - 0; Bacteria - 9; Metazoa - 374; Fungi - 110; Plants - 97; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).","","","","","","","","","","","","",6e-14,"PHYPADRAFT_212537","hypothetical protein"]
["Contig1902@@WT",1.2120686931847364,0.5320239872108697,0.5324842797371113,1.2121423842081895,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14092_c0_g1_i1@@W-35D-5@@WT",4.198077013357833,2.948318271165207,3.0278482683349677,4.040134220209773,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18098_c0_g1_i1@@W-35D-3@@KO",0,0,1.5743749916998648,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN51572_c0_g1_i1@@W-35D-3@@KO",0,0,1.0781628602110713,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14339_c0_g1_i1@@W-35D-3@@KO",0.0927868432148915,0.10860732358480282,0.7826492711168163,0,"","","","","","","","","","","","","","","","","",""]
["Contig11224",2.5010941287939006,3.952178190709318,2.0217498367161433,2.7513708085995416,"","","","","","","","","","","","","","","","","",""]
["Contig11245",0.5735812437965073,1.2206888114104193,0.9529610358905318,0.4171753572605803,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30651_c0_g2_i1@@W-25D-2@@KO",1.213280761877921,1.0143924022820583,2.4366480640770214,6.702339289748482,"","","","","","","","","","","","","","","","","",""]
["Contig643",2.864385965856053,0.499349283823798,1.6278591145380947,2.1128670344519684,"","","","","","","","","","","","","","","","","",""]
["Contig606",425.4224017141551,229.53275877623605,151.4424826368056,151.820130523245,"","","","","","","","","","","","","","","","","",""]
["Contig6910",1.3018033925728767,0.8707230920876037,0.9586240595438925,1.4878657591568336,"","","","","","","","","","","","","","","","","",""]
["Contig15518",2.1253349468160616,0.7054705579560434,1.6499996041517164,2.1994853023357974,"","","","","","","","","","","","","","","","","",""]
["Contig24720@@KO",1.2071813194218948,0.37184472224415627,22.062026093365994,0.0847196290037982,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN12396_c0_g1_i1@@W-35D-3@@KO",0.12819957331761636,0,1.982479933790476,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN6328_c0_g1_i1@@W-25D-2@@KO",1.4547730957768839,0.8514084911240297,0.14608201823003725,0.13855824215968915,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17459_c0_g1_i1@@W-35D-3@@KO",0.17472361202159004,0,3.8072626001203465,0,"","","","","","","","","","","","","","","","","",""]
["Contig543",0.6956885102511016,1.1632940393142872,1.1177284697601015,0.6626007681260364,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29478_c2_g1_i1@@W-25D-2@@KO",1.5835415734049756,0.8425186065465601,0.4047588146307345,0.38391220585109886,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47726_c0_g1_i1@@W-35D-3@@KO",0,0,1.6513428145100295,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44052_c0_g1_i1@@W-35D-3@@KO",0,0,0.4361541880806124,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10862_c1_g1_i1@@W-35D-3@@KO",0.11025815720446394,0,1.70503363262387,0,"","","","","","","","","","","","","","","","","",""]
["Contig6759",8.540692733716215,26.462410494314565,9.534709815953564,13.900403824315944,"","","","","","","","","","","","","","","","","",""]
["Contig6761",0.12137662683852754,0,2.6732600142768446,0.05394844722744199,"","","","","","","","","","","","","","","","","",""]
["Contig6790",4.249993530793815,2.162883586955348,4.80575577669775,1.2319570784774065,"","","","","","","","","","","","","","","","","",""]
["Contig15454",2.7919752436439644,1.4379273743688972,3.454011431037015,4.020688784731804,"","","","","","","","","","","","","","","","","",""]
["Contig15280",3.257434612933979,3.901509239546378,0.6389811356845336,2.121249172364332,"","","","","","","","","","","","","","","","","",""]
["Contig15291",2.7026647383392306,1.0693448457438974,1.409188851113358,1.1166617688781741,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30528_c0_g1_i1@@W-35D-3@@KO",2.5834472281566265,2.3366762654193756,5.777959501537652,3.1316415707637058,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43192_c0_g1_i1@@W-35D-3@@KO",0,0,0.46930817875135233,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9348_c0_g1_i1@@W-35D-5@@WT",0.9090515198885523,0.11822755271352661,0.9939706555092744,0.6734124356712164,"","","","","","","","","","","","","","","","","",""]
["Contig15349",2.0832430664112658,1.4630659648298918,1.464331769277056,2.2222610377150143,"","","","","","","","","","","","","","","","","",""]
["Contig15333",1.6992727757393855,3.7971908106815015,7.818122130728411,18.33266324874347,"","","","","","","","","","","","","","","","","",""]
["Contig776",1.618858871034408,1.2632533029664488,0.5310254186967357,1.2951658351813533,"","","","","","","","","","","","","","","","","",""]
["Contig15182",0.9668276137827538,0.6172773239038895,0.12356227505461569,0.9375868069872677,"","","","","","","","","","","","","","","","","",""]
["Contig15177",0.5097818327218157,0.8950521196606397,0.5374958964875782,0.8496880438322113,"","","","","","","","","","","","","","","","","",""]
["Contig716",2.491181255722461,1.4137873202537399,3.077647816125158,1.81187833737043,"","","","","","","","","","","","","","","","","",""]
["Contig6942",4.780338538156527,11.055433209924567,6.557704976719742,12.080084466582507,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25714_c0_g1_i1@@W-25D-4@@WT",1.8168325275200976,1.063304404907818,1.2770692159732817,0.7267771947244072,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27872_c0_g1_i1@@W-35D-3@@KO",0.184389173537678,0.10791408534915514,2.0737430332570397,0,"","","","","","","","","","","","","","","","","",""]
["Contig15209",3.0408039144810055,2.669453690215943,1.7366460983005088,3.040988788452125,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN133_c0_g1_i1@@W-35D-3@@KO",0,0,0.5972176627639758,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2831_c0_g1_i1@@W-35D-5@@WT",1.4383885736549156,0.3156822828678605,1.6429680929979917,0.9589840162753589,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16527_c0_g1_i1@@W-25D-2@@KO",1.133418360478081,1.0205154952535798,0.24513562012847298,0,"","","","","","","","","","","","","","","","","",""]
["Contig24234@@KO",0.8599406880533383,0.4473615886580191,1.3432459008142346,0.700735012995032,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN56716_c0_g1_i1@@W-35D-3@@KO",0,0,1.2995456341744114,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49939_c0_g1_i1@@W-35D-3@@KO",0,0,0.9518156500300865,0,"","","","","","","","","","","","","","","","","",""]
["Contig22461@@KO",0.16762652139788908,0.0981037139537774,2.003047248032368,0.11175780847309551,"","","","","","","","","","","","","","","","","",""]
["Contig6376",2.0196864982834644,2.5789637346154026,1.2045576587951377,1.7137775799327652,"","","","","","","","","","","","","","","",1E-10,"PHYPADRAFT_136942","hypothetical protein"]
["TRINITY_DN29067_c0_g1_i1@@W-35D-3@@KO",0,0,4.984052858339362,0,"","","","","","","","","","","","","","","","","",""]
["Contig957",1.5979061784881206,0.7701460754852937,0.9249748616344442,1.1280023488618511,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38861_c0_g1_i1@@W-25D-2@@KO",0.5842443476137663,0.22795334882742885,0.13689034067848435,0,"","","","","","","","","","","","","","","","","",""]
["Contig15868",2.4403704492246256,1.5327357726789343,2.677635235249474,4.682621472328066,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16012_c0_g1_i1@@W-35D-3@@KO",0.45804921544772015,0.2144592816663971,3.219672389108115,0.12215388367989509,"","","","","","","","","","","","","","","","","",""]
["Contig15855",12.451567753262738,5.046976976871325,10.022665682287256,6.33764034532584,"","","","","","","","","","","","","","","","","",""]
["Contig6324",33.67010315720723,17.267694431370153,27.733544387525512,15.77538309416653,"","","","","","","","","","","","","","","","","",""]
["Contig15732@@KO",0.19229935997642456,0,1.8022544852640692,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4556_c0_g1_i1@@W-35D-3@@KO",0,0,2.517198413302708,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19082_c0_g1_i2@@W-35D-3@@KO",0.29146719135440136,0.11372112133206932,0.40975023499053054,0,"","","","","","","","","","","","","","","","","",""]
["Contig15766",1.631728460385728,0.919602596211071,1.3593573579230245,0.9670089871228514,"","","","","","","","","","","","","","","","","",""]
["Contig15719",18.87162767644607,11.151882646652648,6.825705464909204,12.826157786388983,"","","","","","","","","","","","","","","","","",""]
["Contig15732",1.3354008689259038,0.8084955384819806,2.2657460744605675,1.7806427443540072,"","","","","","","","","","","","","","","","","",""]
["Contig6679",22.74901428521102,2.898264006520167,580.7707149155008,2.424645525078346,"","","","","","","","","","","","","","","","","",""]
["Contig9614@@WT",2.5629334231062395,0.7674220374898653,2.4299447681648427,0.3973781773080493,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23506_c0_g2_i1@@W-25D-2@@KO",0.3880428875942179,0,0.5455182233008257,0,"","","","","","","","","","","","","","","","","",""]
["Contig15623",6.666377812516051,3.031172563032186,4.649816571981298,3.367580187921983,"","","","","","","","","","","","","","","","","",""]
["Contig15660",1.2886678299287533,0.7541950946335007,1.8116342483844026,2.147910296676222,1e-12,"AT5G19210","P-loop containing nucleoside triphosphate hydrolases superfamily protein \\\\ P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 29066 Blast hits to 29063 proteins in 2795 species: Archae - 157; Bacteria - 14563; Metazoa - 4524; Fungi - 3653; Plants - 2123; Viruses - 4; Other Eukaryotes - 4042 (source: NCBI BLink).","","","","","","","","","","","","",7e-14,"PHYPADRAFT_93276","hypothetical protein"]
["Contig15606",1.2975108406144777,0.949213102572107,1.5200549370411862,1.333633885391044,"","","","","","","","","","","","","","","","","",""]
["Contig6541",5.850176690533609,4.699369170069099,1.9754426727295507,2.9061467971706603,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50030_c0_g1_i1@@W-35D-3@@KO",0,0,0.716661195316771,0,"","","","","","","","","","","","",6e-19,"Z71316","Putative protein of unknown function with strong similarity to alanyl-tRNA synthases from Eubacteria; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene","","",""]
["TRINITY_DN7127_c0_g1_i1@@W-35D-3@@KO",0.19130885554681823,0,2.554984173149195,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38702_c0_g1_i1@@W-25D-2@@KO",0.6686953052678137,0,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47603_c0_g1_i1@@W-35D-3@@KO",0.10416215332056329,0.36576649120747295,1.464331769277056,0.694456574285942,"","","","","","","","","","","","","","","","","",""]
["Contig2445",77.31296866789205,35.83323509221424,30.45810080096277,24.19738062644214,"","","","","","","","","","","","","","","","","",""]
["Contig2497",2.7230149807954906,1.801516561429885,2.496565639423178,3.3151763021650216,"","","","","","","","","","","","","","","","","",""]
["Contig11406@@KO",0,0,1.3206764574943206,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN676_c0_g1_i1@@W-35D-3@@KO",0,0.28982640065201665,0.5221388708736474,0,"","","","","","","","","","","","","","","","","",""]
["Contig7158@@WT",0,0.4661729789899165,0.11197831176824546,0.10621100547902643,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17772_c0_g1_i1@@W-25D-2@@KO",1.432444819218325,1.1177877711097062,1.0068793653210832,1.1141914844741945,"","","","","","","","","","","","","","","","","",""]
["Contig2337",7.19389568441414,2.400230276928067,4.0642306732083755,2.9135928267947047,"","","","","","","","","","","","","","","",5e-13,"PHYPADRAFT_152183","hypothetical protein"]
["Contig2370",1.3756017708366453,1.127102669202287,1.063616218446319,0.27513708085995414,"","","","","","","","","","","","","","","","","",""]
["Contig1090@@KO",0.7153778077110384,0.23924349110425905,1.4367028679699418,0.40881217203247905,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34220_c0_g1_i1@@W-25D-4@@WT",0.268306227748324,0.6281067506390454,0.18859505139915025,0.3577633868767206,"","","","","","","","","","","","","","","","","",""]
["Contig2734",5.962408315514356,3.0837529029374573,3.996102825086315,4.992087195123008,"","","","","","","","","","","","","","","","","",""]
["Contig23274@@KO",0.6467381459903631,0.30280370217374875,1.2728758543685932,0.17247399098683694,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22927_c0_g1_i1@@W-35D-3@@KO",3.5057812120836833,1.6414116541780879,4.139936031198824,0.9349318281648927,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43099_c0_g1_i1@@W-35D-3@@KO",0,0,0.7152587272241746,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28047_c0_g1_i1@@W-35D-3@@KO",0,0,3.4939467252974747,0,"","","","","","","","","","","","","","","","","",""]
["Contig2611",1.8944595134932338,2.419059782866594,2.324306579405744,6.521929849955352,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31961_c0_g2_i1@@W-35D-3@@KO",3.9177677885102495,1.3812532710812342,2.0570830606314723,1.762315942763105,"","","","","","","","","","","","","","","",7e-11,"PHYPADRAFT_86576","hypothetical protein"]
["Contig8895@@WT",0.7858036022525395,3.3506484790404776,0.7101629720431734,0.8981158598019229,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24743_c0_g2_i1@@W-35D-3@@KO",0,0,1.471952826812327,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN56088_c0_g1_i1@@W-35D-3@@KO",0,0,0.7850025979629579,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13914_c0_g1_i1@@W-35D-3@@KO",0,0,0.3863606866929738,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46815_c0_g1_i1@@W-35D-3@@KO",0,0,1.100895209673353,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39680_c3_g1_i3@@W-35D-3@@KO",9.536907829178444,2.9560514790428076,7.100661536420769,3.4117842005409957,"","","","","","","","","","","","","","","","","",""]
["Contig1184@@WT",4.698591590749264,4.1247883827734295,3.4861681639656186,3.8287147999186386,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49559_c0_g1_i1@@W-35D-3@@KO",0,0,0.6787320512749363,0.32188739264952854,"","","","","","","","","","","","","","","","","",""]
["Contig171",3.6489646973772065,3.2033444282591312,4.648868016989054,2.4327910307617002,"","","","","","","","","","","","","","","","","",""]
["Contig148",6.123931652182838,7.059476033012183,0.7826492711168163,3.464252752583577,"","","","","","","","","","","","","","","","","",""]
["Contig16410",1.2315255853648073,0.21355629521727543,0.32061158737855544,0.121639551538085,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46973_c0_g1_i1@@W-35D-3@@KO",0.12763315399515265,0.0746975259412414,1.525147904613747,0,"","","","","","","","","","","","","","","","","",""]
["Contig16295",2.9395711208456454,2.421288397406923,2.1427809608717525,0.8710369896571413,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36175_c0_g1_i1@@W-35D-3@@KO",0.1264536647315788,0.02466907593098391,2.8739647642931794,0,"","","","","","","","","","","","","","","","","",""]
["Contig2620@@WT",1.6468011698376943,0.8433190992843714,1.5916347211904533,1.0979341944055179,"","","","","","","","","","","","","","","","","",""]
["Contig21760@@KO",0.09961254202610191,0,3.6409683716093424,0,"","","","","","","","","","","","","","","","","",""]
["Contig21736@@KO",0.15387590831446848,0,4.3264347728640296,0,"","","","","","","","","","","","","","","","","",""]
["Contig3352@@KO",0.4439698338253517,0,1.12345453774043,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26631_c1_g1_i1@@W-35D-3@@KO",0.8088538412519474,0.5410092812170978,4.873296128154043,0.6163070611262973,"","","","","","","","","","","","","","","","","",""]
["Contig16164",0.09122411743443017,0.8542251808691017,0.2564892699028444,0.121639551538085,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22679_c0_g1_i1@@W-35D-3@@KO",0.0771022344863956,0,2.8723831716210437,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN48326_c0_g1_i1@@W-35D-3@@KO",0,0,0.7539133861624447,0,"","","","","","","","","","","","","","","","","",""]
["Contig21985@@KO",0.2177460089515293,0.06951067169589252,3.3115705758927083,0.13197530146320322,4e-21,"AT3G48195","Phox (PX) domain-containing protein \\\\ Phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: intracellular signaling pathway, cell communication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); Has 654 Blast hits to 601 proteins in 103 species: Archae - 0; Bacteria - 16; Metazoa - 551; Fungi - 11; Plants - 27; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","","","","","","","","","","","","",3e-27,"PHYPADRAFT_190611","hypothetical protein"]
["Contig2213",2.9508876696979653,2.36327979026286,1.5283634810518953,1.4496469851761027,"","","","","","","","","","","","","","","","","",""]
["Contig2259",3.1705943254649505,2.267950492907041,1.7333878504612958,3.1707870903982522,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47186_c0_g1_i1@@W-35D-3@@KO",0,0,0.5402767326113129,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36293_c0_g1_i1@@W-25D-2@@KO",0.6909343746457409,0.808741095213486,0.1387612792754568,1.184530940376568,"","","","","","","","","","","","","","","","","",""]
["Contig370",6.209080554035529,2.164861834138539,3.3429622830324988,1.7615483835545844,"","","","","","","","","","","","","","","","","",""]
["Contig321",5.967805287252392,4.049470667792648,4.377212091156326,4.959057565200371,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10506_c0_g1_i1@@W-35D-3@@KO",0,0,1.3295202730578985,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24854_c0_g1_i1@@W-35D-3@@KO",0,0,1.606309575710004,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8033_c0_g2_i1@@W-35D-5@@WT",0.3641298805155826,0.14207176502549837,0,0.32369068336465195,"","","","","","","","","","","","","","","","","",""]
["Contig2101",52.499971357732534,16.131846828744322,15.92687750778107,24.995944232843005,"","","","","","","","","","","","","","","","","",""]
["Contig23666@@KO",0,0,1.3306937243139074,0,"","","","","","","","","","","","","","","","","",""]
["Contig2158",3.9191507776766334,0.839942753481959,2.716008988620884,1.619278106462405,"","","","","","","","","","","","","","","","","",""]
["Contig2183",3.5286201776347172,0.7434472003695867,4.018088216413655,1.5056361428166873,"","","","","","","","","","","","","","","","","",""]
["Contig249",3.207452954634057,1.4800743236143912,1.7342690847523283,1.3159581376362222,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23991_c0_g1_i1@@W-35D-3@@KO",0,0,0.9229727515443263,0,"","","","","","","","","","","","","","","","","",""]
["Contig11966",3.4333667149160534,3.7416113198928382,1.9972525115385422,2.210117534776681,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20068_c0_g1_i1@@W-35D-3@@KO",0,0,1.0068793653210832,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44730_c0_g1_i1@@W-35D-3@@KO",0,0,0.3955597506618541,0,"","","","","","","","","","","","","","","","","",""]
["Contig14361@@WT",2.8932493767053353,2.5202295708871016,1.9863978783236589,1.5252164265062675,"","","","","","","","","","","","","","","","","",""]
["Contig9582@@KO",1.17112042652309,0.1370800543624403,0.3292767654158137,0.15615888373132533,"","","","","","","","","","","","","","","","","",""]
["Contig11843",7.721887632831091,11.964628334608895,2.889614691373391,5.629727962211369,"","","","","","","","","","","","","","","","","",""]
["Contig21466@@KO",0.6532380268545879,0,2.2958367437911633,0.7258641580476177,"","","","","","","","","","","","","","","","","",""]
["Contig11875",2.482093098155248,0.45959526316986454,41.695070028502435,0.4300686409558507,"","","","","","","","","","","","","","","","","",""]
["Contig11889",1.0668729643136483,8.933569451915854,0.11537159394304079,11.708958725233275,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8047_c0_g1_i1@@W-35D-5@@WT",0.7045765167699891,0.5498061800986767,0.9905073431207404,1.2526566283054823,"","","","","","","","","","","","","","","","","",""]
["Contig11714",8.942664906129162,1.5481615251229592,9.102739920469967,10.713424282961403,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50456_c0_g1_i1@@W-35D-3@@KO",0,0,0.5512778425513624,0,"","","","","","","","","","","","","","","","","",""]
["Contig11796",3.5252709788220473,2.922825565897456,2.8909383811083305,2.5461838330429654,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17049_c0_g1_i1@@W-25D-4@@WT",0.46468049095286146,0.6798876690898514,0,0.15490291415707874,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27280_c0_g1_i1@@W-35D-3@@KO",0,0,2.076688690974734,0,"","","","","","","","","","","","","","","","","",""]
["Contig10827@@KO",0.29146719135440136,0,1.7755843516256322,0.0647744248661327,"","","","","","","","","","","","","","","","","",""]
["Contig21393@@KO",0.023234024547643072,0.027195506763594057,2.253736145057835,0,"","","","","","","","","","","","","","","","","",""]
["Contig11677",13.022383665976301,18.55541265427684,7.312094808351168,16.063828683924065,"","","","","","","","","","","","","","","","","",""]
["Contig6412@@WT",4.440801368896561,4.725430445413315,2.648530504431545,3.050432853012535,"","","","","","","","","","","","","","","","","",""]
["Contig11628",3.7203775165809274,3.244689502249008,1.9484980310380224,1.750872332745163,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36499_c1_g1_i4@@W-35D-3@@KO",0.11323551162374826,0.08836170751585874,0.6367547205776188,0.05032995381584528,"","","","","","","","","","","","","","","","","",""]
["Contig17992@@KO",0,0,1.284377744618912,0,"","","","","","","","","","","","","","","","","",""]
["Contig19090@@KO",0.8650562860161481,0.09205012724882562,9.784181201035226,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4609_c0_g1_i1@@W-35D-3@@KO",0,0,0.8854099070047317,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26506_c0_g1_i1@@W-25D-2@@KO",2.050384342966293,0.7999940081088789,0.3843293476462179,0.9113373340787124,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25686_c0_g1_i1@@W-35D-3@@KO",0.1393294398114287,0,1.9587203087435863,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54196_c0_g1_i1@@W-35D-3@@KO",0,0,1.3520242032486556,0,"","","","","","","","","","","","","","","","","",""]
["Contig21324@@KO",6.524539986717836,4.012190352724999,4.021200433078554,3.5934433801349166,"","","","","","","","","","","","","","","","","",""]
["Contig2831",3.2549450352191047,1.6668419755808468,1.572953562491035,2.1700952856559765,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36440_c0_g4_i1@@W-35D-3@@KO",0.27919752436439643,0,8.164027018814762,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2702_c0_g1_i1@@W-35D-3@@KO",0.20060859158034414,0,1.0340713234894767,0,"","","","","","","","","","","","","","","","","",""]
["Contig9048@@WT",1.5064105281861422,1.3483743588616317,0.9965840752871253,1.1815702859016435,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26887_c0_g1_i1@@W-35D-5@@WT",0.4938057638900778,0.1445003422054214,0.34710086382863553,0.9876715723177841,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20172_c0_g1_i2@@W-35D-5@@WT",2.5924802604229087,0.6936016425860227,2.6032564787147665,2.370411773562682,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23548_c0_g1_i1@@W-25D-2@@KO",2.7955777923454406,1.4023858096065323,1.1228792922013924,0.5325233823095887,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40933_c0_g1_i1@@W-35D-3@@KO",0.468448170609236,0.1370800543624403,0.16463838270790684,0.15615888373132533,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19404_c1_g1_i1@@W-35D-3@@KO",0,0,0.7911195013237082,0,1E-10,"TRZ1","tRNAse Z1 \\\\ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. \\\\ tRNAse Z1 (TRZ1); BEST Arabidopsis thaliana protein match is: Metallo-hydrolase/oxidoreductase superfamily protein (TAIR:AT2G04530.1); Has 2024 Blast hits to 2024 proteins in 946 species: Archae - 244; Bacteria - 1574; Metazoa - 35; Fungi - 17; Plants - 82; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN47611_c0_g1_i1@@W-35D-3@@KO",1.9460234632344755,0.4555654501266729,2.188606045578163,1.9028941819954912,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25975_c0_g1_i1@@W-35D-3@@KO",0,0,2.773587594016846,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35772_c0_g1_i1@@W-35D-3@@KO",2.6561937583485564,0.5731030521367562,5.076350133493794,0.8160845618727455,"","","","","","","","","","","","","","","","","",""]
["Contig7333",6.702501042041999,4.147515733468515,5.461452557414013,3.3016449703194497,"","","","","","","","","","","","","","","","","",""]
["Contig7369",4.1025869714740795,4.246478366360729,3.9085512764928745,3.5716151576421273,4e-11,"NPQ6","Protein of unknown function (DUF565) \\\\ Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7 \\\\ NONPHOTOCHEMICAL QUENCHING 6 (NPQ6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","","","","","","","",3e-12,"PHYPADRAFT_48047","hypothetical protein"]
["TRINITY_DN2786_c0_g1_i1@@W-35D-3@@KO",1.1889728720493564,0.15463298815275278,1.3000408878459717,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40884_c0_g1_i1@@W-35D-3@@KO",0.08206715110104987,0,0.8076011576012855,0.10942952079657269,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10047_c0_g1_i1@@W-35D-5@@WT",0.67076556937081,0.7851334382988068,1.508760411193202,1.0732901606301617,"","","","","","","","","","","","","","","","","",""]
["Contig7218",4.749794191417686,2.9261319296597836,3.280103163180606,2.370411773562682,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23472_c0_g1_i3@@W-25D-4@@WT",0.685986107356533,0.669124275911648,0.6429150564847023,5.183321259472487,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44948_c0_g1_i1@@W-35D-3@@KO",0,0,0.7124701941745677,0,"","","","","","","","","","","","","","","","","",""]
["Contig7284",3.29011053590251,4.752403823292357,4.920533247328396,2.9869485999659,"","","","","","","","","","","","","","","","","",""]
["Contig14963",2.823109997876115,1.306414457484469,2.6766209794785465,2.013503182656937,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30553_c0_g1_i1@@W-25D-4@@WT",0.13230978864535672,0.6194762762027837,0,0.08821188851998531,"","","","","","","","","","","","","","","","","",""]
["Contig14973",13.043121831449431,1.5827053804208782,10.761959764526452,21.746792603352304,"","","","","","","","","","","","","","","","","",""]
["Contig21804@@KO",0.897131589676073,0,14.756098524690037,0,"","","","","","","","","","","","","","","","","",""]
["Contig7590",17.24881324161117,12.189645080146878,15.657283803658364,9.875196896067512,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21060_c0_g1_i1@@W-35D-3@@KO",2.0258862443230594,0.5269570920945758,39.95153481684727,0.22511215706723522,"","","","","","","","","","","","","","","","","",""]
["Contig14842",3.466516462508346,1.7521323312144643,0.8860538414825533,2.1010467992941955,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33387_c1_g1_i1@@W-35D-3@@KO",0,0,2.2178228738565124,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14555_c0_g1_i1@@W-25D-2@@KO",1.5627738150652382,1.1640568550777717,1.1983515069231252,0.18943864583800124,"","","","","","","","","","","","","","","","","",""]
["Contig7520",1.6992727757393853,1.1050026168649874,1.1944353255279516,0.7552782611841878,"","","","","","","","","","","","","","","","","",""]
["Contig3373@@KO",7.37842126307891,0.7851334382988068,10.372727826953264,0.8944084671918014,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28819_c1_g1_i5@@W-25D-2@@KO",3.5644616701400196,3.289398347886503,2.0479695817528616,2.286904777963281,"","","","","","","","","","","","","","","","","",""]
["Contig14708",9.66148187439491,5.983011487990692,5.307711935824611,4.492184510555283,6e-17,"HAF01","HAC13 protein (HAC13) \\\\ This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. \\\\ HAF01; FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding (InterPro:IPR009067), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the TAFII250 family 2 (TAIR:AT3G19040.1); Has 22854 Blast hits to 14376 proteins in 1001 species: Archae - 24; Bacteria - 596; Metazoa - 11292; Fungi - 2677; Plants - 2799; Viruses - 159; Other Eukaryotes - 5307 (source: NCBI BLink).","","","","","","","","","","","","",2e-15,"HAF1502","transcription initiation factor TFIID, subunit TAF1"]
["TRINITY_DN37428_c1_g1_i1@@W-35D-3@@KO",0,0,3.807262600120346,0,"","","","","","","","","","","","","","","","","",""]
["Contig14742",5.020107681986172,3.2782193488383595,2.1543534712876107,3.734482573135719,"","","","","","","","","","","","","","","","","",""]
["Contig14737",4.549113597406234,3.442264779748236,3.2945135542928976,5.545047955189214,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35362_c0_g1_i1@@W-35D-3@@KO",2.660307899167435,1.3194490144147482,1.5213203313696284,1.0221013305619524,"","","","","","","","","","","","","","","","","",""]
["Contig24103@@KO",0.7987365120986973,0.058432742066938846,3.8598975669422866,0.5325233823095887,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54570_c0_g1_i1@@W-35D-3@@KO",0,0,0.8036438206058778,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1938_c0_g1_i1@@W-25D-2@@KO",2.255610026974609,0.5558314533052374,1.0013622181138444,0.9497882791329925,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN472_c0_g1_i1@@W-35D-3@@KO",0.1274454581804539,0,1.433322390633542,0,1E-10,"AT1G19880","Regulator of chromosome condensation (RCC1) family protein \\\\ Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["Contig10269",35.77101948617011,20.736928015401453,33.63081963439639,20.46332038895909,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4027_c0_g1_i1@@W-25D-2@@KO",0.5887426057249229,0,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35462_c0_g1_i1@@W-25D-4@@WT",0.39632429068311886,0.30926597630550556,0.18572012683513883,0.3523096767109169,"","","","","","","","","","","","","","","","","",""]
["Contig10129",18.1079624269053,2.3243033767510335,17.547056435251875,1.1032501605677376,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25249_c1_g4_i1@@W-25D-2@@KO",0.3542080854061662,0.138200599765948,0,0.15743538686809366,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32851_c1_g1_i1@@W-35D-3@@KO",0.137124860067577,0,1.9277278987951119,0,4e-12,"AT3G55580","Regulator of chromosome condensation (RCC1) family protein \\\\ Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G53830.1); Has 20178 Blast hits to 6212 proteins in 476 species: Archae - 78; Bacteria - 2696; Metazoa - 7040; Fungi - 1181; Plants - 2975; Viruses - 2; Other Eukaryotes - 6206 (source: NCBI BLink).","","","","","","","","","","","","",2E-12,"PHYPADRAFT_56756","hypothetical protein"]
["TRINITY_DN14831_c0_g1_i1@@W-35D-3@@KO",0.07642232060203585,0.2683577783814969,2.1487196332248866,0,"","","","","","","","","","","","","","","","","",""]
["Contig17133@@KO",3.4624825023114782,0,215.4987426724441,0,"","","","","","","","","","","","","","","","","",""]
["Contig7134",10.394219018797449,9.540799888198753,9.148358313359395,12.467898164443131,"","","","","","","","","","","","","","","","","",""]
["Contig7178",3.762994844170244,3.870707850813117,4.328256429610499,3.725211265853853,"","","","","","","","","","","","","","","","","",""]
["Contig10071",0.43008889113006776,0,0.6046273111853652,0.4301150395577447,"","","","","","","","","","","","","","","","","",""]
["Contig10089",13.332755625032101,14.23523641456111,9.245078413597847,10.931121861192773,"","","","","","","","","","","","","","","","","",""]
["Contig8415@@KO",2.456106513051528,1.1331648680850466,1.6886162628585069,1.8646029724807816,"","","","","","","","","","","","",8e-11,"SWI5","Transcription factor that recruits Mediator and Swi/Snf complexes; activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; required for expression of the HO gene controlling mating type switching; localization to nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase; SWI5 has a paralog, ACE2, that arose from the whole genome duplication","","",""]
["Contig8030@@KO",1.3528269070810717,1.2475970888994095,5.59022852922117,0.7106189505654444,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43062_c0_g1_i1@@W-35D-3@@KO",0,0,0.8752327816368611,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43283_c0_g1_i1@@W-25D-2@@KO",0.4190663034947227,0.1962074279075548,1.060436778370077,0.22351561694619101,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN12297_c0_g1_i1@@W-35D-3@@KO",0,0,1.589118302658927,0,"","","","","","","","","","","","","","","","","",""]
["Contig6855@@WT",0.08614603535060503,1.210010817831481,0.24221153718459457,0.11486836377850969,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN7563_c0_g1_i1@@W-35D-3@@KO",0.0966141711958848,0,1.3582207715033565,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN12984_c0_g1_i1@@W-35D-3@@KO",0,0,2.3643274594354664,0.1319150387684712,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32795_c0_g1_i1@@W-25D-4@@WT",0.1388828710940844,0.32512576996219816,0.5857327077108224,0.37037683961916906,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN37537_c0_g1_i1@@W-25D-2@@KO",0.28228961421077736,0,0.7936964378101047,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46853_c0_g1_i1@@W-35D-3@@KO",0,0,0.9091970388347095,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28400_c0_g1_i1@@W-25D-4@@WT",0,0.6371811572123482,0.15305578291941088,0.43551849482857063,"","","","","","","","","","","","","","","","","",""]
["Contig14228",2.9573397120805622,1.8060398853686497,4.067105448199776,4.972061787647243,"","","","","","","","","","","","","","","","","",""]
["Contig14216",43.883129408200276,30.17347770676956,32.36173210102294,27.083806397151736,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13360_c1_g4_i1@@W-35D-5@@WT",0.24073030989641295,0.14088783365028587,0.33842334223291964,1.4444696745147594,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47774_c0_g1_i1@@W-35D-3@@KO",0,0,0.3422258516962109,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25976_c1_g1_i1@@W-25D-4@@WT",1.3097669253809874,1.4053295245721211,1.227530510870036,0.7276925312416923,"","","","","","","","","","","","","","","","","",""]
["Contig14141",2.7702667591183663,0.6372753451143751,1.553295606257525,1.2170697922740765,"","","","","","","","","","","","","","","","","",""]
["Contig14159",233.96133804490987,800.9693601014311,360.21758270365183,965.8534034265008,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26874_c0_g1_i1@@W-25D-4@@WT",0.19088747040244197,0.6703033495255891,0,0.12726605061804047,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN56211_c0_g1_i1@@W-35D-3@@KO",0.15989467077990527,0,2.6973963808970716,0,"","","","","","","","","","","","","","","","","",""]
["Contig10036@@KO",0.7894394777979533,0.10267129577753627,6.535543896562861,0,"","","","","","","","","","","","","","","","","",""]
["Contig3138",44.45152889075578,11.953686443516398,38.77888961582285,13.998104499098934,9e-25,"AT5G12260","BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","","","","","","","",4e-26,"PHYPADRAFT_2298","hypothetical protein"]
["Contig3147",10.269825278740942,5.841719239753226,7.269417821102964,6.150257574649121,"","","","","","","","","","","","","","","","","",""]
["Contig3190",5.807641132273849,3.8143571344187595,4.490472046605084,6.79750435065769,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10346_c0_g1_i1@@W-25D-2@@KO",0.4966355963479006,0.43598527318713104,0,0.1655552635547002,"","","","","","","","","","","","","","","","","",""]
["Contig15572@@KO",0.4126805312509936,0,24.430942229766963,0.15285393381108564,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54828_c0_g1_i1@@W-35D-3@@KO",0,0,0.7339301397822354,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42338_c0_g1_i1@@W-35D-3@@KO",0,0.26978521337288786,0.5400372482440207,0,6e-25,"COP9","COP9 signalosome, subunit CSN8 \\\\ Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex. \\\\ CONSTITUTIVE PHOTOMORPHOGENIC 9 (COP9); CONTAINS InterPro DOMAIN/s: COP9 signalosome, subunit CSN8 (InterPro:IPR019280); Has 218 Blast hits to 218 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 17; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","","","","","","","","","","","","",1e-16,"PHYPADRAFT_130004","hypothetical protein"]
["TRINITY_DN6460_c0_g1_i1@@W-35D-3@@KO",0,0,0.8321885464743926,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30567_c0_g1_i1@@W-25D-4@@WT",0.17868641559321372,0.6274592179064278,0.12560041567407326,0.11913151954760902,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5657_c0_g1_i1@@W-25D-2@@KO",0.9764835105657313,0,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig18124@@KO",0.5393957151205933,0.28060647366032043,4.971031665993924,0,"","","","","","","","","","","","","","","","","",""]
["Contig14670",3.0990925204448008,1.8627695531597077,1.6485054557222119,1.5636011940623684,"","","","","","","","","","","","","","","","","",""]
["Contig7713",38.68879980478065,24.21575847553034,52.15663501819,15.476460798372422,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9317_c0_g2_i1@@W-25D-4@@WT",0.33161828404097704,0.25877357201072915,0.6215938938971993,0.589579458985616,"","","","","","","","","","","","","","","","","",""]
["Contig7746",29.158882607171144,22.303933101819904,21.640027799119085,24.3231513267274,"","","","","","","","","","","","","","","","","",""]
["Contig14698",6.22440801279123,6.585144047963638,5.889688000186171,7.022835986591095,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20844_c0_g1_i1@@W-35D-5@@WT",1.4754438348489824,0.5453722592914292,0.6550129204508122,1.2425545587223736,"","","","","","","","","","","","","","","","","",""]
["Contig6367@@KO",3.669008581700956,2.228836468036677,2.3504643704923036,2.539046373209223,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2719_c0_g1_i1@@W-35D-3@@KO",0,0,1.837379630684529,0,"","","","","","","","","","","","","","","","","",""]
["Contig14563",2.2181578554740904,1.5698930035317569,2.175578628640198,2.1323123766646446,"","","","","","","","","","","","","","","","","",""]
["Contig7629",9.175004263976493,7.655791715336289,10.216553727786254,10.538269323503904,"","","","","","","","","","","","","","","","","",""]
["Contig7640",3.6915236162614233,2.3662297416315763,1.7298718507646196,3.1643554735820283,"","","","","","","","","","","","","","","","","",""]
["Contig7672",0.788869155967439,0.3957317564169278,0.9505779183655481,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34193_c0_g1_i4@@W-35D-3@@KO",0.8803230294180339,0.9540936816046448,0.8250501345633255,0.43475385237464537,"","","","","","","","","","","","","","","","","",""]
["Contig14426",1.603384117718939,4.269644246423095,5.015302444561862,8.017407999156852,"","","","","","","","","","","","","","","","","",""]
["Contig14448",18.45531097207555,15.374787468965996,5.6222404526756,9.980417056765821,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32013_c6_g1_i1@@W-25D-2@@KO",3.375063138748704,6.116939109238542,3.520283007146451,1.7420739793142825,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54565_c0_g1_i1@@W-35D-3@@KO",0,0,0.5487946090263561,0,"","","","","","","","","","","","","","","","","",""]
["Contig14454",3.850573681666801,2.2535549617922244,3.4447707772583396,5.534494309739181,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2045_c0_g1_i1@@W-35D-5@@WT",0.5555314843763375,0.5202012319395171,1.093367721060202,1.6296580943243437,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8911_c0_g1_i1@@W-35D-3@@KO",0,0,1.210255660965408,0,1E-10,"AT1G09010","glycoside hydrolase family 2 protein \\\\ glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18; Bacteria - 3983; Metazoa - 234; Fungi - 319; Plants - 43; Viruses - 2; Other Eukaryotes - 473 (source: NCBI BLink).","","","","","","","","","","","","",2e-11,"PHYPADRAFT_134728","hypothetical protein"]
["TRINITY_DN20261_c0_g2_i3@@W-35D-5@@WT",4.769284054138927,2.8279585436538195,9.483695397837792,3.09603927339876,"","","","","","","","","","","","","","","","","",""]
["Contig23360@@KO",4.80738789778144,2.091138760326582,6.575661942036939,1.5592476246636084,"","","","","","","","","","","","","","","","","",""]
["Contig7854",15.318255178922016,5.702530261477516,9.186821755101203,11.64945272635687,"","","","","","","","","","","","","","","","","",""]
["Contig16754@@KO",0.052206573230547386,0,1.908218363433812,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30360_c0_g1_i1@@W-35D-3@@KO",0.40623239795019683,0,5.901257030186537,0,"","","","","","","","","","","","","","","","","",""]
["Contig6325@@KO",1.3562270980079603,0.31749370963444706,0.5719831136331036,0.09042063690233236,"","","","","","","","","","","","","","","","","",""]
["Contig19833@@KO",0.1984041015629777,0,2.3987148982443207,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9708_c0_g1_i1@@W-35D-3@@KO",0,0,0.7209017941056276,0,"","","","","","","","","","","","","","","","","",""]
["Contig3866",1.3977888961727203,1.0225729861714299,1.8422238387679093,1.6308528583231154,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15659_c1_g1_i1@@W-35D-3@@KO",0,0,0.8187661505635153,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN48771_c0_g1_i1@@W-35D-3@@KO",0,0,1.7876086248872054,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49026_c0_g1_i1@@W-35D-3@@KO",0,0,0.34809258058243164,0,"","","","","","","","","","","","","","","","","",""]
["Contig22810@@KO",2.558556813736289,0.8830819550525111,2.905163286087289,2.2744109939369412,"","","","","","","","","","","","","","","","","",""]
["Contig3730",1.4343164805674777,0.7952553676427286,2.0163899484957932,1.6105585221070489,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10298_c0_g1_i1@@W-35D-5@@WT",25.654191434188185,10.259195886716272,8.37597772026476,8.995106609478274,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18019_c0_g1_i1@@W-35D-3@@KO",0,0,1.8358307332087147,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25688_c1_g1_i1@@W-25D-4@@WT",4.61494298142605,2.5335908256809185,2.928111481336666,2.6139319274913646,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29176_c0_g1_i1@@W-35D-3@@KO",0,0,1.605170002685785,0.0761248840323984,2E-16,"SRT1","sirtuin 1 \\\\ Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230). \\\\ sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","","","","","","","",1E-13,"SRT1501","class IV sirtuin"]
["TRINITY_DN14931_c0_g1_i1@@W-25D-2@@KO",1.9108553781660793,1.4472524546177226,0.6320747247930016,1.199040974953886,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36836_c1_g2_i1@@W-35D-3@@KO",20.995653832202613,21.30746927473911,1.884006235111099,2.5315447903866914,"","","","","","","","","","","","","","","","","",""]
["Contig23413@@KO",0.5293546081491802,0,5.102927882883814,0.20167115874551614,"","","","","","","","","","","","","","","","","",""]
["Contig11777@@KO",0,0,1.5429056690919227,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2155_c0_g1_i1@@W-35D-3@@KO",0.16475838700134726,0,3.5322132107580395,0,"","","","","","","","","","","","","","","","","",""]
["Contig3942",4.5612058717215085,2.7907924943166678,2.623185714915454,2.9027620253406647,"","","","","","","","","","","","","","","","","",""]
["Contig3991",1.5102115955967996,2.311618074905495,2.9396558413797846,1.858834969884945,"","","","","","","","","","","","","","","","","",""]
["Contig3895",53.71263140671059,51.57988222204529,40.63950128071923,60.351270075839274,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31332_c0_g1_i1@@W-25D-4@@WT",1.1742941946166485,0.8247092701480149,0.33016911437358015,1.5658207853818529,9e-15,"AT5G10460","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \\\\ Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 (InterPro:IPR006356); Has 4117 Blast hits to 4117 proteins in 1113 species: Archae - 73; Bacteria - 2243; Metazoa - 198; Fungi - 54; Plants - 37; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN25683_c0_g2_i1@@W-25D-4@@WT",4.091382090943327,3.0475308223066127,5.882465819928432,8.183261675362585,"","","","","","","","","","","","","","","","","",""]
["Contig15047",3.518175752031852,0.4691434542928327,3.819001333728117,4.780259354509275,"","","","","","","","","","","","","","","","","",""]
["Contig15048",2.09243151491711,0.7135459863961247,27.771302555402553,1.7794987625200838,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9165_c0_g1_i1@@W-25D-4@@WT",1.609454071878875,1.4491320032600834,2.4366480640770214,1.32065798812778,"","","","","","","","","","","","","","","","","",""]
["Contig3324",5.058358227195756,4.456535658561344,3.2114817580931456,3.408706679608051,"","","","","","","","","","","","","","","","","",""]
["Contig15118",624.0678063831715,805.500651771079,388.05259296803456,590.5134302763211,"","","","","","","","","","","","","","","","","",""]
["Contig13195@@WT",2.9649937524522905,2.100996844247896,2.2616938919401623,2.074292137689191,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24358_c0_g1_i1@@W-35D-3@@KO",0,0,2.1836462873372566,0,"","","","","","","","","","","","","","","","","",""]
["Contig807@@KO",0.5524957932048821,0,1.4424601472222804,0.5262184606611144,"","","","","","","","","","","","","","","","","",""]
["Contig20986@@KO",1.3015706367365507,0.8252253585523628,1.6772921592520174,1.157022017133224,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13027_c0_g1_i1@@W-25D-2@@KO",2.6842494731812416,1.7953847828001033,0.26954071505276783,0.639145873679097,"","","","","","","","","","","","","","","","","",""]
["Contig3254",3.198406556390082,1.6277156647658189,1.4857610146811109,1.5946648524809923,"","","","","","","","","","","","","","","","","",""]
["Contig3282",1.290020439292228,0.23230360357604388,3.441067876749992,0.6615891638998898,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35041_c0_g1_i1@@W-25D-2@@KO",0.9848058132125984,0.2881796597392211,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20734_c0_g1_i1@@W-35D-3@@KO",0,0,1.3939634233850238,0,"","","","","","","","","","","","","","","","","",""]
["Contig18848@@KO",4.851447727433147,0.9600572474276428,17.173314990474378,0.8377109670967594,"","","","","","","","","","","","","","","","","",""]
["Contig3647",9.189378876959319,9.956380022398669,7.751164314763772,4.838462857537204,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33553_c0_g1_i1@@W-25D-2@@KO",1.2537130063321325,0.8254549385658702,0.2203117598622985,0.2089648715392057,"","","","","","","","","","","","","","","","","",""]
["Contig3599",11.177859612387582,4.1251626354439415,13.012966143282476,3.2838507054132693,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26861_c0_g1_i1@@W-35D-5@@WT",1.4379907892042365,0.6732692935500387,0.8086221451583036,0.8948042231507359,"","","","","","","","","","","","","","","","","",""]
["Contig4454@@WT",0.8909271282147619,1.1376363390079158,1.2524826497592165,0.6479863960440042,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13794_c0_g1_i1@@W-35D-3@@KO",1.0905567730206625,0.42550016874247415,0.9198755275458554,0.2908328203720992,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43831_c0_g1_i1@@W-35D-3@@KO",0,0.1258551367595606,0.9825193806762184,0,"","","","","","","","","","","","","","","","","",""]
["Contig3474",1.163861415614889,0.5239630177076747,0.7551595239908124,1.074398931457259,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN25516_c0_g1_i1@@W-35D-3@@KO",0,0,0.8351414735747856,0,7e-22,"AT5G04540","Myotubularin-like phosphatases II superfamily \\\\ Myotubularin-like phosphatases II superfamily; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: Myotubularin-like phosphatases II superfamily (TAIR:AT3G10550.1); Has 1724 Blast hits to 1576 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).","","","","","","","","","",4e-25,"YMR1","Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family",4e-23,"PHYPADRAFT_12645","hypothetical protein"]
["Contig10622",1.2876272389808134,0.6552922495362135,0.3935155142243252,0.29859838232863245,"","","","","","","","","","","","","","","","","",""]
["Contig10606",4.492368775232273,2.9286919750925566,5.276206437962054,2.1989302131720745,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52359_c0_g1_i1@@W-35D-3@@KO",0.08879396676507034,0,1.12345453774043,0,"","","","","","","","","","","","","","","","","",""]
["Contig11778@@KO",0,0,1.0275021956951296,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40752_c0_g1_i1@@W-35D-3@@KO",0,0,1.2011645386295176,0,"","","","","","","","","","","","","","","","","",""]
["Contig12156@@KO",0,0,1.2223986943530207,0,1e-12,"AT1G61850","phospholipases;galactolipases \\\\ Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea. \\\\ phospholipases;galactolipases; FUNCTIONS IN: phospholipase activity, galactolipase activity; INVOLVED IN: response to fungus, jasmonic acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Armadillo-like helical (InterPro:IPR011989), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 20427 Blast hits to 10030 proteins in 743 species: Archae - 51; Bacteria - 3224; Metazoa - 10329; Fungi - 1071; Plants - 3980; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN40597_c0_g1_i1@@W-35D-3@@KO",0,0,1.1866792519855625,0.18759346422269602,"","","","","","","","","","","","","","","","","",""]
["Contig10584",704.1461039804747,1194.2863716950264,358.7287427668948,452.25562922181115,"","","","","","","","","","","","","","","","","",""]
["Contig10568",9.851853144893662,10.358920485732003,11.737225742182185,12.691294250071874,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31359_c0_g1_i1@@W-35D-3@@KO",0,0,0.17207966554216253,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19310_c0_g1_i1@@W-25D-4@@WT",2.008742983241591,4.366589811147933,4.03418553655136,0.7652819467627864,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5910_c0_g1_i1@@W-35D-5@@WT",0.10568647751549837,0,0,0.5636954827374671,"","","","","","","","","","","","","","","","","",""]
["Contig8002",8.941737791693138,6.231680080432948,7.079919066637455,5.481858347304589,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4462_c0_g1_i1@@W-35D-3@@KO",0.6486744877448253,0.1518551500422243,1.6414545341836222,1.0379422810884498,"","","","","","","","","","","","","","","","","",""]
["Contig8062",3.652651584340492,0.7613799786181731,3.4467596749357403,0.6671915355726371,"","","","","","","","","","","","","","","","","",""]
["Contig18020@@KO",0.3968742827601146,0,9.079100821602557,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26400_c1_g1_i2@@W-35D-3@@KO",0.10207645649317863,0,0.5022537234552165,0,"","","","","","","","","","","","","","","","","",""]
["Contig13895@@WT",5.375950418314513,5.003729338611049,4.325141369344489,5.700149388219677,"","","","","","","","","","","","","","","","","",""]
["Contig14853@@KO",0,0,4.771504041926282,0,"","","","","","","","","","","","","","","","","",""]
["Contig15478@@KO",18.558627379223463,34.107961588359906,15.110995746214087,16.5722102192391,"","","","","","","","","","","","","","","","","",""]
["Contig10327",2.429801258767532,1.264040376675462,0.7116378691813731,1.6199659901100105,"","","","","","","","","","","","","","","","","",""]
["Contig14829@@WT",0.09586605261361578,0.8976923914000516,0.5390814301055357,1.7896084463014719,"","","","","","","","","","","","","","","","","",""]
["Contig19737@@KO",0.6506224591794945,0.15231117151382256,1.2805207543948312,0.1735098708125837,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24801_c0_g1_i1@@W-35D-3@@KO",0.1096998880540616,0,2.0048370147469163,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27119_c0_g1_i1@@W-25D-4@@WT",0.2674781221071255,0.6261681495568261,0,0.11888639296417773,"","","","","","","","","","","","","","","","","",""]
["Contig15692@@KO",0,0,1.031312668204157,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42031_c0_g1_i1@@W-35D-3@@KO",0,0,0.7994252178730386,0,"","","","","","","","","","","","","","","","","",""]
["Contig16970@@KO",0.34186552884697696,0.3001160953497214,0.8410520931232323,0.11396210449820587,"","","","","","","","","","","","","","","","","",""]
["Contig10995",21.40199072132678,15.99356060319096,12.95317314560499,11.73234110147186,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13339_c0_g1_i1@@W-35D-3@@KO",0.11025815720446394,0,1.0850214025788263,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30456_c0_g2_i1@@W-35D-3@@KO",1.261206613178712,0.6326771739804937,1.0764817330901604,1.0210388551663578,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9836_c0_g2_i1@@W-35D-3@@KO",0.184389173537678,0.43165634139662057,0.3888268187356949,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33864_c0_g1_i1@@W-25D-4@@WT",0.3037251573459416,1.066534067819921,0.5693102953450985,0.40499149752750263,"","","","","","","","","","","","","","","","","",""]
["Contig10879",2.7916624172861333,0.9945023551784885,1.7063361793256453,5.826432300563735,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32216_c0_g3_i1@@W-25D-2@@KO",2.8449945715030616,0.9392522243352391,0.8204202235949567,2.139955073355199,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35720_c0_g1_i1@@W-35D-3@@KO",24.069179304682947,20.53130222218886,7.95971700931827,6.055216875565871,"","","","","","","","","","","","","","","","","",""]
["Contig16638@@WT",11.01241417647679,5.408224686199924,3.769400320119149,4.564843391284212,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15047_c0_g1_i1@@W-35D-3@@KO",0.12559842255465023,0,3.178236605317854,0,"","","","","","","","","","","","","","","","","",""]
["Contig24391@@KO",2.4196845256303665,0.07453287305525777,80.3413533250965,0.0424531866132185,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13675_c0_g1_i1@@W-25D-2@@KO",4.581875988964959,2.758166652730672,3.8647741197596264,2.792932301176574,"","","","","","","","","","","","","","","","","",""]
["Contig18412@@KO",0,0,1.2895566871375366,0,"","","","","","","","","","","","","","","","","",""]
["Contig3581@@WT",0.12292611569178533,1.9424535362847926,0,0.5736900834952235,"","","","","","","","","","","","","","","","","",""]
["Contig10791",8.223706238697336,18.516686708323288,11.56104585267738,17.146223879678303,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50755_c0_g1_i1@@W-35D-3@@KO",0,0,0.738378201235461,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55007_c0_g1_i1@@W-35D-3@@KO",0,0,0.9160331067958727,0.086885393955775,"","","","","","","","","","","","","","","","","",""]
["Contig11832@@KO",0.30862860243129864,0.03612508555135535,6.681691628701235,0.04115298217990768,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24590_c1_g1_i1@@W-35D-3@@KO",0,0,1.512104295083258,0,"","","","","","","","","","","","","","","","","",""]
["Contig13741",1.5969823998042134,0.3738546937157463,0.9728631705467223,1.5615888373132532,"","","","","","","","","","","","","","","","","",""]
["Contig13709",5.545834784303028,1.9041495605977203,2.7027666239762183,2.1691694770870105,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN865_c0_g1_i1@@W-25D-2@@KO",2.548909163609078,1.3425781794909595,1.6124876894627347,2.379126522730192,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26993_c0_g1_i1@@W-25D-4@@WT",0,0.4555654501266729,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig8634",1.3452576141270134,1.1602527477082365,0.1990725542546586,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5799_c0_g1_i1@@W-25D-2@@KO",1.1403014679303771,0.4449089483693238,0.2671763228154629,0.5068314647420208,"","","","","","","","","","","","","","","","","",""]
["Contig8598",3.6924047532983635,1.9067526358685307,3.81680461164947,1.303280909336625,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55012_c0_g1_i1@@W-35D-3@@KO",0.12003173346635548,0,1.349943525804444,0,"","","","","","","","","","","","","","","","","",""]
["Contig7219@@KO",0.4273319110587212,0.20007739689981427,0.24030059803520923,0.22792420899641175,"","","","","","","","","","","","","","","","","",""]
["Contig13646",5.0595763762964285,2.9280406915186616,2.8610349088966984,3.147115924904955,"","","","","","","","","","","","","","","","","",""]
["Contig24830@@KO",15.964220551025278,6.8404750811783535,156.89929557338056,5.511792179069476,"","","","","","","","","","","","","","","","","",""]
["Contig8538",1.0378791803917204,0.8098941335585296,0.36476767426302714,0.4613076804837555,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38867_c0_g1_i1@@W-35D-3@@KO",0,0,5.79093689817208,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17651_c0_g1_i1@@W-35D-3@@KO",0,0,2.499800929668651,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4235_c0_g1_i1@@W-35D-3@@KO",0,0,0.7925899836681761,0,"","","","","","","","","","","","","","","","","",""]
["Contig13586",3.526978958947445,4.069364869619885,2.9041444949755197,2.418646896861923,"","","","","","","","","","","","","","","","","",""]
["Contig8828",6.374723783218473,5.7547261283309075,2.401504101614372,3.277835030629646,"","","","","","","","","","","","","","","","","",""]
["Contig8821",2.1864496036463192,1.6286116550400018,1.2574445284801143,2.1203224580033164,"","","","","","","","","","","","","","","","","",""]
["Contig24120@@KO",3.0720061934542247,0.09462615692929649,70.34912087983565,0.5389812218338654,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42411_c0_g1_i1@@W-35D-3@@KO",0.0368778347075356,0,1.2442458199542237,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22025_c2_g1_i1@@W-25D-2@@KO",4.433251251557703,0.6695659421003686,3.015653544649779,1.9068906594254247,"","","","","","","","","","","","","","","","","",""]
["Contig20766@@KO",0.6111629870430794,0.4292210446891643,1.1169402268336135,0.9779202309831939,"","","","","","","","","","","","","","","","","",""]
["Contig13419",8.984491911468716,5.148643942468331,3.289211749564014,2.4958439300471005,"","","","","","","","","","","","","","","","","",""]
["Contig13424",3.0374284406350425,2.185617637760149,2.824546543923902,1.446782844760743,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42375_c0_g1_i1@@W-35D-3@@KO",0.07980010272809268,0.09340629855267572,1.6827680000531917,0,"","","","","","","","","","","","","","","","","",""]
["Contig13487",1.8708184083378376,0.3864352008693555,3.287541038834077,4.292138461415285,"","","","","","","","","","","","","","","","","",""]
["Contig8205",5.342234274413547,4.747726996982236,2.3643274594354664,3.8255361242856636,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38883_c0_g1_i1@@W-25D-2@@KO",1.5804786303229543,1.0791408534915512,0.5554668839081356,0.3512388266297287,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33598_c0_g1_i1@@W-35D-3@@KO",0,0,1.3084625642418373,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23327_c0_g2_i1@@W-25D-2@@KO",15.71253238918479,31.64264588199664,38.69001993635811,77.55891225322492,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1650_c0_g1_i1@@W-25D-4@@WT",3.8284820369068084,3.1572454287895386,3.0580422490926478,1.3922599272431415,"","","","","","","","","","","","","","","","","",""]
["Contig4282@@KO",1.5139906236858742,0.794403688534142,2.715541517194271,2.1580028872268695,"","","","","","","","","","","","","","","","","",""]
["Contig8103",1.6732519542733362,1.350722240056003,0.7300210578126896,0.6924222141482202,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30233_c0_g1_i1@@W-35D-5@@WT",0.9558409363534043,0.24862558879462213,1.3437397412189456,0.28322934794407045,"","","","","","","","","","","","","","","",8e-20,"PHYPADRAFT_124552","hypothetical protein"]
["Contig11369@@WT",1.0364015619686113,0.8665083163001638,0.2775225585509136,1.3819527637726627,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24492_c1_g1_i1@@W-25D-4@@WT",2.20084829530609,1.3302814601117752,1.394833925106538,1.154613561643771,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22454_c0_g3_i1@@W-25D-4@@WT",1.3163986566487391,2.8248902342032003,1.2337458552288716,1.9015803310067716,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29446_c0_g1_i1@@W-25D-4@@WT",0.2311010975005564,1.0820185624341956,0.16244320427180142,0,"","","","","","","","","","","","","","","","","",""]
["Contig8435",10.16715722244068,16.575965232821346,9.69894829974792,6.132943869448139,"","","","","","","","","","","","","","","","","",""]
["Contig13907",1.6929924645302112,2.731468453874603,3.6022252267242134,4.331883712377947,"","","","","","","","","","","","","","","","","",""]
["Contig15679@@KO",0,0,1.1520794629205775,0,"","","","","","","","","","","","","","","","","",""]
["Contig13999",11.346831942745156,4.5659998642866375,17.989547370884942,18.57426333287227,"","","","","","","","","","","","","","","","","",""]
["Contig13952",6.098501184042461,3.381308007606861,1.5793089304202916,3.851919132039358,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40410_c0_g1_i1@@W-35D-3@@KO",0.13170655252691285,0,0.5554668839081356,0.17561941331486436,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24570_c0_g1_i1@@W-25D-2@@KO",1.2987629798226092,0.41460179929784396,0.9959052033012349,0.3148707737361873,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26843_c0_g1_i1@@W-35D-3@@KO",0,0.1461660522020257,3.072142732085582,0,"","","","","","","","","","","","","","","","","",""]
["Contig16447@@KO",1.5533918110296836,0.3827895857668145,1.609107212126335,0.8721326336692887,"","","","","","","","","","","","","","","","","",""]
["Contig8387",1.7665101877290732,1.1554829522397547,1.168656145840298,2.6326066010340936,"","","","","","","","","","","","","","","","","",""]
["Contig13867",2.237424567023459,1.920536389862761,3.6696506989111772,2.983414129806732,"","","","","","","","","","","","","","","","","",""]
["Contig19278@@KO",0,0,2.451972894668701,0.07267771947244073,"","","","","","","","","","","","","","","","","",""]
["Contig13888",13.537126331693177,2.443426954402038,11.205023944295792,4.9765670538026745,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29463_c0_g1_i1@@W-25D-2@@KO",0.2058501462297118,0.240948314081249,0.28938813112553696,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54063_c0_g1_i1@@W-35D-3@@KO",0,0.1584988128565716,0.5710893900180519,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50081_c0_g1_i1@@W-35D-3@@KO",0,0.30100664756144163,0.36152048428442457,0,"","","","","","","","","","","","","","","","","",""]
["Contig4203",0.1805477324223097,0,2.2843575600722077,0.2407449457524599,"","","","","","","","","","","","","","","","","",""]
["Contig4237",5.058517965664712,2.178485885958165,49.17574424472624,1.8453577339615868,"","","","","","","","","","","","","","","","","",""]
["Contig6541@@KO",9.788732480727635,8.147730138811713,3.3026856290200595,6.555223824103124,"","","","","","","","","","","","","","","","","",""]
["Contig3489@@KO",3.375292345073916,0.21355629521727543,3.975583683494088,0.121639551538085,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN11894_c0_g1_i1@@W-35D-3@@KO",0.3877535192962356,0,1.3627785593271933,0,"","","","","","","","","","","","","","","","","",""]
["Contig14176@@KO",298.15703813529746,354.0886537581379,229.23228756609598,425.6857634489633,"","","","","","","","","","","","",6e-15,"RRT15","Putative protein of unknown function identified by fungal homology comparisons and RT-PCR; identified in a screen for mutants with decreased levels of rDNA transcription",1e-39,"PHYPADRAFT_157898","hypothetical protein"]
["TRINITY_DN13105_c0_g1_i1@@W-35D-3@@KO",0,0,1.0771037611342433,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14898_c0_g1_i1@@W-25D-2@@KO",1.7373461044410934,0,0.5746811471879768,0.6813536200541317,"","","","","","","","","","","","","","","","","",""]
["Contig4153",3.9749621734911735,1.5082951546028587,2.916854411382523,1.3105067611525034,"","","","","","","","","","","","","","","","","",""]
["Contig4174",0.9548379553079127,1.0111991418341608,3.3877845591836864,1.1519380405364292,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38143_c0_g1_i3@@W-35D-3@@KO",71.74824940977845,65.57565457705445,27.917492201074214,35.75858772384572,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33136_c0_g1_i1@@W-25D-2@@KO",0.35228825838499456,0,0.16508455718679008,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34057_c0_g1_i1@@W-35D-3@@KO",0.054062951692269906,0.09492131025721069,3.0401098740823724,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN6221_c0_g1_i1@@W-25D-2@@KO",0.5990523840740231,0.11686548413387769,0.2807198230503481,0.5325233823095887,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21854_c0_g5_i1@@W-25D-4@@WT",2.8868951781885483,2.099647921929228,1.1426713107735063,1.7191618377148492,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5080_c0_g1_i1@@W-35D-3@@KO",0,0,0.8015289684463887,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32394_c0_g1_i1@@W-25D-4@@WT",0,0.4449089483693238,0.5343526456309258,0,"","","","","","","","","","","","","","","","","",""]
["Contig4302",31.958657292367953,22.49583150802167,17.717582926490643,26.90267810200359,"","","","","","","","","","","","","","","","","",""]
["Contig4355",5.106653367646611,3.516091515709041,4.0118122372152,1.1015020048292792,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28885_c0_g1_i1@@W-25D-4@@WT",1.7894996487874943,0.29923079713335055,0.8984690501758928,0.6817555985910368,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40332_c0_g1_i1@@W-35D-3@@KO",0,0,0.8849811370739787,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34512_c0_g1_i1@@W-35D-3@@KO",0.05919597784338023,0,1.7475959475962246,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28072_c1_g1_i1@@W-35D-3@@KO",0,0,1.5454427467718952,0,"","","","","","","","","","","","","","","","","",""]
["Contig13314",6.000444722365135,13.135631002066823,18.54531296126274,15.208158518146938,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN56252_c0_g1_i1@@W-35D-3@@KO",0,0,0.7997750757364402,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55300_c0_g1_i1@@W-35D-3@@KO",0.14300810488895818,0,0.4020871392866372,0.19068906594254248,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN902_c0_g2_i1@@W-25D-2@@KO",0.8003171252492883,0.2676497103646592,0.6429150564847023,0.15245062527860256,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28053_c0_g1_i1@@W-35D-3@@KO",0,0,1.6583357967856316,0.10486168236041811,"","","","","","","","","","","","","","","","","",""]
["Contig13226",28.927870665546667,21.80425637217238,31.108552350101252,24.034258651164798,"","","","","","","","","","","","","","","","","",""]
["Contig8902",9.230369278868377,9.453657003516225,7.569468838109091,11.111305188575072,"","","","","","","","","","","","","","","","","",""]
["Contig8932",1.9943347849158897,0.530539959352541,2.0390360368845366,0.4835044935614257,"","","","","","","","","","","","","","","","","",""]
["Contig8988",7.996432902646064,2.3522142661612944,7.357029178976514,5.024242346138293,"","","","","","","","","","","","","","","","","",""]
["Contig8991",1.9102772570766051,0.8943944766630932,0.8504098680650883,0.679250985811496,"","","","","","","","","","","","","","","","","",""]
["Contig4066",9.778734327469195,7.035640885393159,4.918699508230013,5.622366434964281,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31017_c0_g1_i1@@W-25D-4@@WT",0.2634131050538257,0.3083259581404433,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15106_c0_g1_i1@@W-35D-3@@KO",0.5535039972070808,0.37021620521243004,0.8892876146266502,0.3163072279959327,"","","","","","","","","","","","","","","","","",""]
["Contig12159@@KO",0.7499675039080557,0.09753773098865945,5.74018053556606,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44960_c0_g1_i1@@W-35D-3@@KO",0.0952339687502293,0,0.9371723323373159,0,"","","","","","","","","","","","","","","","","",""]
["Contig13189",3.6109546484461936,3.0739163705516916,5.076350133493795,3.6476506932190893,"","","","","","","","","","","","","","","","","",""]
["Contig13130",120.83945630227747,118.15723149258177,100.84763982673174,111.36914888266212,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26469_c0_g1_i1@@W-35D-3@@KO",0.4189143761339391,0.12258518456580765,4.784958433988108,0.17455826882353587,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19632_c0_g1_i1@@W-35D-3@@KO",0,0,1.2960893957856496,0,1E-13,"AT2G24320","alpha/beta-Hydrolases superfamily protein \\\\ alpha/beta-Hydrolases superfamily protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G31020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","","","","","","","","","","","","",3e-12,"PHYPADRAFT_107060","hypothetical protein"]
["Contig4933@@WT",3.130175984205483,0.5028857518395473,2.5885071502234647,0.4910378496934026,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23801_c0_g2_i1@@W-25D-2@@KO",0.4622021950011128,0.6762616015213723,0.6497728170872057,2.0029979486604663,"","","","","","","","","","","","","","","","","",""]
["Contig3566@@KO",2.363533951710236,0.5674922530249277,2.1157375381554555,0.8619679176591571,"","","","","","","","","","","","","","","","","",""]
["Contig13019",1.051734363625105,1.3541646146969224,0.739274291285504,0.8414386453484035,"","","","","","","","","","","","","","","","","",""]
["Contig23890@@KO",0.5374005612570054,0,6.123430187138729,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52227_c0_g1_i1@@W-35D-3@@KO",0,0,0.5554668839081356,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39794_c0_g2_i2@@W-35D-3@@KO",0.46097293384419497,0.10791408534915514,1.4256983353642148,0.24586717864081012,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42951_c0_g1_i1@@W-35D-3@@KO",0.12782140348482102,0,0.7187752401407143,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10383_c0_g1_i1@@W-35D-3@@KO",0.0952339687502293,0,3.0792805205368956,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29500_c0_g1_i1@@W-25D-4@@WT",0.2841406936482251,0.33258767287936336,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig4996",2.536158242330393,1.4208597930914273,1.0665668114394167,1.4451922706500844,"","","","","","","","","","","","","","","","","",""]
["Contig2748@@KO",7.401335614827603,3.4653156599697645,7.5672300126615575,7.715800745855236,"","","","","","","","","","","","","","","","","",""]
["Contig9914@@WT",5.065195769663433,2.553291456256034,2.390908936594347,1.3803805763280976,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN41580_c0_g1_i1@@W-35D-3@@KO",0.06419474930571012,0,1.2634471443362334,0,"","","","","","","","","","","","","","","","","",""]
["Contig2063@@WT",4.519231584558427,0.7779082839586338,1.308016598814352,1.4178843430819723,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28645_c0_g1_i1@@W-35D-3@@KO",0.0749679165767376,0,1.8970443405443937,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9414_c0_g1_i1@@W-25D-2@@KO",0.26502419438137204,0,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27014_c0_g1_i1@@W-25D-2@@KO",13.023780248890205,5.841304563702864,6.673404108076112,8.601898061717106,"","","","","","","","","","","","","","","","","",""]
["Contig10188@@KO",185.02566648109422,78.80607102611624,57.6660243135447,91.96962939756058,"","","","","","","","","","","","","","","","","",""]
["Contig7820@@WT",3.854448003506411,2.183053950391804,1.1361701876973198,1.906617073964962,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45649_c0_g1_i1@@W-35D-3@@KO",0.1384391558509723,0.3240870294830857,0.583861357206954,0,"","","","","","","","","","","","","","","","","",""]
["Contig15863@@KO",0.5491946233378242,0,4.709617614344053,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32595_c0_g1_i1@@W-35D-3@@KO",0.274249720135154,0.24075769041504547,6.0723428812046025,0,1e-11,"AT1G33840","Protein of unknown function (DUF567) \\\\ Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT5G01750.2); Has 377 Blast hits to 376 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["Contig4624",6.646712981210693,2.8925643722890553,4.252753504165893,2.272518661970123,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8269_c1_g1_i1@@W-35D-3@@KO",0,0,0.5266530397860998,0,"","","","","","","","","","","","","","","","","",""]
["Contig4679",6.702608126714508,2.247608583651718,4.940528056343459,3.864801804721764,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30246_c1_g1_i1@@W-35D-3@@KO",0,0,4.7777413021118065,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10548_c0_g1_i1@@W-25D-4@@WT",0.5591155584690881,0.9816700667245726,0.589511628405731,0.7455327352334242,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN41151_c0_g1_i1@@W-35D-3@@KO",2.1413800822180917,1.0320852930195359,1.2395738698066243,1.6796159005985574,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32204_c0_g1_i1@@W-35D-5@@WT",0.45136933105577426,0.528329376188572,0.3807262600120346,1.4444696745147594,"","","","","","","","","","","","","","","","","",""]
["Contig4505",5.0647156108076485,0.47572515258538084,22.898514454980667,0.0833748729878649,"","","","","","","","","","","","","","","","","",""]
["Contig4511",2.9911639252054294,1.5140185108687438,1.818394077669419,1.9403323986019156,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39964_c0_g1_i1@@W-25D-2@@KO",0.6988944480863601,0.11686548413387769,0.8421594691510442,0.798785073464383,"","","","","","","","","","","","","","","","","",""]
["Contig4593",3.66248309019131,1.3918666332080933,12.23673424056243,1.3318930039433565,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32190_c2_g3_i1@@W-25D-2@@KO",0.3746235370145908,0,0.17555101326203323,0.3330189451330857,"","","","","","","","","","","","","","","","","",""]
["Contig4910",0.6749447941020923,0.07900252354221637,1.138620590690197,0.6299867739316708,"","","","","","","","","","","","","","","","","",""]
["Contig4944",1.1886434254236848,2.403174020368966,3.1901252709237813,2.161301258625575,"","","","","","","","","","","","","","","","","",""]
["Contig4887",7.4863735810039405,4.9529018702973735,14.585569397644143,6.510285856967929,"","","","","","","","","","","","","","","","","",""]
["Contig18238@@KO",1.8700381656564753,0.96936388627447,7.023014611319406,0.997414325188983,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29311_c0_g1_i3@@W-25D-2@@KO",0.969285233543259,0.15471160177153914,36.233836235004006,0.0587481311444742,"","","","","","","","","","","","","","","","","",""]
["Contig4802",212.2411455884257,124.78691761315196,289.4977898291236,235.81807244403745,"","","","","","","","","","","","","","","","","",""]
["Contig4701@@KO",8.761177555792079,3.1838593648268985,3.1569710319246083,2.4039349327690887,"","","","","","","","","","","","","","","","","",""]
["Contig4776",5.53167520613034,5.515608806734597,3.0242085901665163,4.370972064725513,"","","","","","","","","","","","","","","","","",""]
["Contig4781",6.754440927608733,9.179112226726684,5.230585342305363,16.41009141456662,"","","","","","","","","","","","","","","","","",""]
["Contig22128@@KO",1.068263932976378,0.03907520810023337,30.64582407246331,0,"","","","","","","","","","","","","","","","","",""]
["Contig460@@WT",7.18639171018636,2.6329857436282933,5.792032283461772,3.7729863629401907,"","","","","","","","","","","","","","","","","",""]
["Contig9115",0.4049668764612554,0.6636211977546175,0.3415861772070591,0.1079977326740007,"","","","","","","","","","","","","","","","","",""]
["Contig9167",3.062930346291158,0.6326771739804937,13.171070616632548,0.3603666547645969,"","","","","","","","","","","","","","","","","",""]
["Contig9072",2.560299522334243,0.6547716598642879,3.024637616778825,1.4631172472741356,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52070_c0_g1_i1@@W-35D-3@@KO",0,0,0.45347048338902385,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21807_c1_g2_i1@@W-35D-5@@WT",1.0645010813338491,0.0732942487198019,0.26408757919909914,3.924281774693277,"","","","","","","","","","","","","","","","","",""]
["Contig5894@@KO",8.331935181355623,7.322309811121267,7.240195709998617,6.43584497170235,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24458_c1_g1_i1@@W-35D-3@@KO",0,0,1.3053471771841185,0,"","","","","","","","","","","","","","","","","",""]
["Contig9049",0.4034586199381222,0.9444994434656037,0.2268759836198344,0.4303820259261853,"","","","","","","","","","","","","","","","","",""]
["Contig9061",0.5321406850341759,0.9787996864125124,0.2137410582523703,0.20273258589680834,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32759_c0_g1_i1@@W-25D-2@@KO",0.2647543123097006,0.20659723060734386,0.12406558371064264,0.3530272116940349,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34908_c1_g1_i3@@W-35D-3@@KO",0.06797091102957542,0,2.341093238034785,0.045316695671051274,"","","","","","","","","","","","","","","","","",""]
["Contig9337",1.3731799367330595,0.35718042333875294,0.42898733522482774,0.40689286606049563,"","","","","","","","","","","","","","","","","",""]
["Contig9361",0.40591527664032157,0.11878131174262978,0.2853217873626489,0.13531331845571518,"","","","","","","","","","","","","","","","","",""]
["Contig9380",3.9429377490812754,2.4630461441549274,1.0913793780637298,2.2610274961758607,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN46209_c0_g1_i1@@W-35D-3@@KO",72.30982047265368,42.11767449173621,64.05384515177346,19.743505098895202,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40980_c0_g1_i1@@W-25D-2@@KO",0.26261488352335954,0,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig10473@@KO",2.112719163335632,3.151792836918441,4.367796481973628,3.093319379457993,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21922_c0_g5_i1@@W-25D-2@@KO",1.1653936762711434,0.4960354045389038,0.44681810465960053,0.423805283476213,"","","","","","","","","","","","","","","","","",""]
["Contig13049@@WT",0.3279137194264652,0.32899213046985676,0.4609874715821392,0.6246355349253013,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40406_c0_g1_i1@@W-35D-3@@KO",0,0,0.6356473210635708,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23293_c0_g1_i1@@W-35D-3@@KO",0.6506224591794945,0.6092446860552903,0.7317261453684749,0.3470197416251674,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9189_c0_g1_i1@@W-25D-4@@WT",0.40245934162248603,1.2562135012780908,0.9429752569957514,0.7155267737534412,"","","","","","","","","","","","","","","","","",""]
["Contig13238@@KO",0.5690810327757604,1.1419051432818668,2.400075485254102,0.6504178646970774,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30261_c0_g1_i1@@W-35D-5@@WT",8.59065021101663,57.8026593320325,44.8896198837132,92.50369386917461,"","","","","","","","","","","","","","","","","",""]
["Contig19256@@KO",0.18798896217507302,0,1.1892533935299996,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36430_c0_g1_i1@@W-25D-4@@WT",0,0.33258767287936336,0,0.18943864583800124,"","","","","","","","","","","","","","","","","",""]
["Contig20591@@KO",4.0951822832953,1.2307442939565203,1.7893647980131384,3.5419946041741226,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21889_c0_g1_i1@@W-35D-3@@KO",0,0,0.8402234703713867,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN3739_c0_g1_i1@@W-25D-2@@KO",1.1303858029918519,1.0290937414455663,0.529706100886309,0.6698989794851058,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35032_c0_g1_i1@@W-25D-2@@KO",0.6770539965836614,0.1584988128565716,0.3807262600120346,0,"","","","","","","","","","","","","","","","","",""]
["Contig22245@@KO",0.052143749436046126,0,2.7122737175345906,0,"","","","","","","","","","","","","","","",1e-12,"PHYPADRAFT_162342","hypothetical protein"]
["TRINITY_DN37853_c1_g1_i1@@W-35D-3@@KO",0,0,0.8907880999156715,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35837_c0_g1_i1@@W-25D-2@@KO",0.3186136454511348,0,0,0.28322934794407045,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50217_c0_g1_i1@@W-35D-3@@KO",0,0,0.5657851541974508,0,"","","","","","","","","","","","","","","","","",""]
["Contig20816@@KO",0.3918865509941606,0.06552922495362135,10.349458024099752,0.037324797791079056,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32220_c0_g1_i8@@W-25D-2@@KO",5.641180187302871,2.8674474027163996,2.022114575997528,2.2176505376367674,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26152_c0_g2_i2@@W-25D-4@@WT",5.248354504047922,1.5231117151382259,4.207425335868731,2.02428182614681,"","","","","","","","","","","","","","","","","",""]
["Contig24338@@KO",0,0,2.025139680915078,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36768_c0_g1_i1@@W-25D-2@@KO",0.4040228977282455,0.23645510542705322,0.14199580792989636,0.4040474614027299,"","","","","","","","","","","","","","","","","",""]
["Contig11418@@KO",1.7427642178972491,0.2781697629658295,16.48189732556669,0.10562849539413231,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36274_c0_g1_i1@@W-35D-3@@KO",0,0,1.8772327150054093,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13044_c1_g1_i1@@W-25D-4@@WT",1.2111276460626985,1.4176291336239946,0.18918075031653894,0.7177489065911847,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43807_c0_g1_i1@@W-25D-2@@KO",0.9146481431420439,0.40147456554698874,0.9643725847270533,0.30490125055720513,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN24543_c0_g1_i4@@W-35D-3@@KO",0.2024834382306277,0.11850378531332457,0.28465514767254924,0.26999433168500175,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18585_c0_g1_i1@@W-35D-3@@KO",0,0,1.5252883030216096,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40860_c0_g1_i1@@W-25D-2@@KO",0.6155036332578739,0,0.6922295636582447,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1591_c0_g1_i1@@W-35D-3@@KO",0.045420813188002444,0.053165220245390894,1.340922676771946,0,"","","","","","","","","","","","","","","","","",""]
["Contig18607@@KO",1.868254699891494,1.1286702667950579,0.9319585780544936,0.4821595575570824,"","","","","","","","","","","","","","","","","",""]
["Contig12281@@KO",3.4721622547925612,0.8590945426493002,4.206591120393555,1.5056361428166871,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39013_c1_g1_i1@@W-35D-3@@KO",0,0,0.8402234703713867,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10031_c0_g1_i1@@W-35D-3@@KO",2.7082159863346456,0.6339952514262864,1.5229050400481383,0.18055870931434492,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35048_c0_g1_i1@@W-35D-3@@KO",0,0,3.8105250359387868,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN3112_c0_g1_i1@@W-25D-4@@WT",1.2956249236949797,1.011022327855872,0.809517629261469,0.5758683087766482,"","","","","","","","","","","","","","","","","",""]
["Contig10093@@KO",5.467965376515418,1.777853484219932,4.545074631290388,2.285690621665818,"","","","","","","","","","","","","","","","","",""]
["Contig21940@@KO",0,0.059113776356763306,1.7749475991237045,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31454_c0_g2_i1@@W-25D-2@@KO",0.8883441959730956,0,0.2775225585509136,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40861_c0_g1_i1@@W-35D-3@@KO",0,0.10907445185828585,1.5720310090819494,0,"","","","","","","","","","","","","","","","","",""]
["Contig1375@@WT",2.5705100887244092,1.4184300540384713,14.91930700250549,1.0527490848158414,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43380_c0_g1_i1@@W-25D-2@@KO",1.1088758369244218,0.1996835437563107,0.5995689134047789,1.023639926821483,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55670_c0_g1_i1@@W-35D-3@@KO",0.8262353856614172,0.32237046682692533,1.8068364881927066,0.48965073712364726,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16200_c0_g1_i1@@W-25D-2@@KO",2.2433178742390525,0.8292035985956879,0.9959052033012349,0.6297415474723747,"","","","","","","","","","","","","","","","","",""]
["Contig12328@@KO",4.052017249579346,2.4266001649371454,2.9806767728379655,2.8481025840378003,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14612_c0_g1_i1@@W-35D-3@@KO",0,0,1.8945230163278277,0,"","","","","","","","","","","","","","","","","",""]
["Contig11608@@KO",0,0.07103588251274918,2.132920224157057,0,"","","","","","","","","","","","","","","","","",""]
["Contig3445@@KO",0.5739265666404547,0.3358915239344564,0.201709276827568,0.5739614600720898,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50110_c0_g1_i1@@W-35D-3@@KO",0.4896209692808399,0.286551526068378,0.5735988851405418,0.4352450996654642,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21758_c0_g2_i7@@W-35D-5@@WT",1.3861958603039892,2.0432074453548568,0.5774047545206212,1.0953324546083483,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39804_c0_g1_i1@@W-25D-2@@KO",0.2961147319910319,0.46213776869342066,0,0.2632290978614596,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26772_c1_g1_i3@@W-25D-2@@KO",1.7059628260375719,0.9984177187815535,1.4389653921714693,1.1373776964683144,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN6153_c0_g1_i1@@W-35D-3@@KO",0.0878934194347958,0,1.235622750546157,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33731_c1_g1_i1@@W-35D-3@@KO",29.865038445795587,9.533763179342653,5.801543009707195,9.412584345208957,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16062_c0_g1_i3@@W-35D-5@@WT",10.983022455471989,8.988922772697446,5.428176380369602,9.553522203721379,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17817_c0_g1_i1@@W-25D-2@@KO",1.0521987055075002,0.6717830478689127,0.6723642560918933,0.5101879645085243,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8764_c0_g1_i1@@W-35D-3@@KO",0.07057240355269434,0.08260524448550964,2.5795134228828402,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26702_c1_g1_i1@@W-35D-3@@KO",0,0,1.6804469407427733,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26498_c3_g1_i2@@W-25D-4@@WT",13.19255138460863,11.378262299007563,13.482704610941957,7.37786213322511,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN14508_c0_g1_i1@@W-35D-3@@KO",0,0,1.5181607875869292,0,"","","","","","","","","","","","","","","","","",""]
["Contig13926@@WT",0.04491237124933077,9.956774512449307,0.10102189320385661,11.282673577055583,"","","","","","","","","","","","","","","","","",""]
["Contig17140@@KO",0.9693837982405888,0.07564447444310651,27.618978802364452,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN3033_c0_g1_i1@@W-25D-2@@KO",5.017326458893659,2.8029263747267397,5.129785398056887,3.8012359855651563,"","","","","","","","","","","","","","","","","",""]
["Contig17957@@KO",0,0,1.556963619218544,0,1e-12,"AT1G01760","adenosine deaminases;RNA binding;RNA binding;adenosine deaminases \\\\ adenosine deaminases;RNA binding;RNA binding;adenosine deaminases; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","","","","","","","",2E-16,"PHYPADRAFT_144740","hypothetical protein"]
["TRINITY_DN22996_c0_g1_i1@@W-35D-3@@KO",4.066706206017073,3.4469644737739844,3.942796220189355,4.487672775191485,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49876_c0_g1_i1@@W-35D-3@@KO",0.24073030989641295,0.14088783365028587,0.33842334223291964,0.4814898915049198,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30966_c0_g1_i1@@W-35D-3@@KO",0.18981238452408028,0,3.0496221077309404,0.03615693803541325,4e-19,"SUA","suppressor of abi3-5 \\\\ Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5.  Controls alternative splicing of the developmental regulator ABI3. \\\\ suppressor of abi3-5 (SUA); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 996294 Blast hits to 498601 proteins in 22091 species: Archae - 21896; Bacteria - 611740; Metazoa - 183692; Fungi - 26269; Plants - 56661; Viruses - 72133; Other Eukaryotes - 23903 (source: NCBI BLink).","","","","","","","","","","","","",7e-19,"PHYPADRAFT_56617","hypothetical protein"]
["Contig11004@@KO",0.11843240391214029,0.017328192727742713,9.21963693531022,0.11843960433329083,"","","","","","","","","","","","","","","","","",""]
["Contig12542@@KO",0.9598740204730388,0.08025256347168183,7.518138805300937,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50068_c0_g1_i1@@W-35D-3@@KO",0,0,0.36807372569139296,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29634_c0_g1_i1@@W-35D-5@@WT",0,0.3538578147495552,0.14166558512075705,0.40310781614365376,"","","","","","","","","","","","","","","","","",""]
["Contig21998@@KO",0,0.03195943296414803,2.264685503789292,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN35302_c0_g1_i1@@W-25D-4@@WT",0,0.5310954985769939,0.3189329926802384,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29792_c0_g1_i1@@W-25D-2@@KO",1.7427642178972491,0.2781697629658295,0.779549197830857,1.5844274309119846,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36173_c0_g1_i2@@W-35D-3@@KO",0.37597792435014604,0.05501043396323527,4.030247611407221,0.12533359431798347,"","","","","","","","","","","","","","","",1e-12,"PHYPADRAFT_232165","hypothetical protein"]
["TRINITY_DN48009_c0_g1_i1@@W-35D-3@@KO",0,0,0.7595536359342336,0,"","","","","","","","","","","","","","","","","",""]
["Contig15510@@KO",8.262996291405916,3.655787873864661,5.115426306669744,3.5581058462504913,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN41074_c0_g1_i1@@W-35D-3@@KO",0.3834642104544631,0,0.5390814301055357,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49199_c0_g1_i1@@W-35D-3@@KO",0.2602489836717978,0.15231117151382256,0.5487946090263561,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54470_c0_g1_i1@@W-35D-3@@KO",0.28601620977791636,0,1.4073049875032302,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27182_c0_g1_i1@@W-35D-3@@KO",3.7776140937590954,3.4333281308008123,3.12390777445772,1.8370691245110786,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16800_c0_g1_i1@@W-35D-3@@KO",1.8551693606696043,1.5510587190857161,2.4217450178135533,1.5902418435024874,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19876_c0_g1_i1@@W-25D-2@@KO",4.757459536825253,3.160569799395137,0.9038012107110613,0.3429008129411892,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29788_c0_g1_i1@@W-25D-4@@WT",0.10147881916008039,0.8314691821984084,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig16052@@KO",0,0,1.3766373243373002,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36634_c0_g1_i1@@W-25D-2@@KO",0.4290243146668746,0,0.2010435696433186,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29444_c0_g3_i1@@W-25D-2@@KO",1.2334449046672642,0.6277180707190955,0.37695669308122237,0.21452519918536028,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN2594_c0_g1_i1@@W-35D-3@@KO",0,0,0.3867695339804796,0.18342472057330278,"","","","","","","","","","","","","","","","","",""]
["Contig1222@@WT",1.6115004216206155,2.095852070830699,0.7551595239908124,0.47751063620322626,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18715_c0_g1_i1@@W-35D-5@@WT",2.4815371152317454,0.7447814994728769,1.7890220734779894,0.9332843711989633,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13019_c0_g1_i1@@W-35D-3@@KO",2.2731255491858007,1.1640568550777717,4.793406027692501,0.947193229190006,7e-13,"AT5G57370","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN27537_c0_g1_i1@@W-35D-3@@KO",1.7040460138734848,2.9918877033600033,5.475613627139374,2.2721994880007452,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49122_c0_g1_i1@@W-35D-3@@KO",0,0,0.9130908163029524,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18727_c0_g1_i5@@W-35D-5@@WT",0.42519715753336096,0.31671484460189153,0.9237960992263463,6.4427728568900955,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26194_c0_g1_i1@@W-35D-3@@KO",0,0,0.9371723323373159,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17313_c0_g3_i1@@W-35D-5@@WT",0.29427134656267795,0.34444563744721846,0.20684618540551963,0.8828677127764234,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23111_c0_g1_i1@@W-35D-3@@KO",0.5009416853335761,0,0.17605838613273275,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5278_c0_g1_i1@@W-35D-3@@KO",0,0,0.7936964378101047,0,"","","","","","","","","","","","","","","","","",""]
["Contig2582@@KO",0.9048331833693478,0,0.2826737893360814,0,"","","","","","","","","","","","","","","","","",""]
["Contig14516@@KO",0.6551192018779272,0.5477280789859926,1.447253169808166,0.6863570807629525,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13634_c0_g3_i1@@W-25D-4@@WT",0.5959139301954426,1.7936211435242682,0.7180691740894956,0.5675715813417521,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN4755_c0_g1_i1@@W-35D-3@@KO",0.13541079931673228,0,1.5229050400481383,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33206_c0_g1_i1@@W-35D-3@@KO",0,0,1.433322390633542,0,8e-44,"AT5G04540","Myotubularin-like phosphatases II superfamily \\\\ Myotubularin-like phosphatases II superfamily; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: Myotubularin-like phosphatases II superfamily (TAIR:AT3G10550.1); Has 1724 Blast hits to 1576 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).","","","","","","","","","",2e-30,"YMR1","Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family",2e-44,"PHYPADRAFT_12645","hypothetical protein"]
["TRINITY_DN54795_c0_g1_i1@@W-35D-3@@KO",0,0,0.46265469571082685,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN37428_c0_g2_i1@@W-35D-3@@KO",0.33331889062580256,0,2.967712385734834,0,"","","","","","","","","","","","","","","","","",""]
["Contig11998@@KO",0.060434387421693624,0,1.6991966974037807,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26444_c0_g2_i1@@W-25D-4@@WT",0.27252487912801465,0.7974783036808635,0.5746811471879768,0.18169429868110182,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23959_c0_g2_i1@@W-35D-3@@KO",0.18386756342866054,0.14347841616436469,0.947776828318502,0.32689554161578716,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23702_c1_g1_i1@@W-35D-3@@KO",0,0,1.038344345487367,0,"","","","","","","","","","","","","","","","","",""]
["Contig10745@@WT",3.8258643103223244,3.05180186428873,3.14740348368353,3.5143408693230245,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN10630_c0_g1_i1@@W-35D-3@@KO",0,0.11221154892500645,1.752014647842991,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40566_c0_g1_i1@@W-35D-3@@KO",0,0,1.1915149457589347,0,1E-10,"AT4G10430","TMPIT-like protein \\\\ TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN48077_c0_g1_i1@@W-35D-3@@KO",0,0,0.6296248227589203,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23230_c0_g1_i1@@W-35D-3@@KO",0,0.05288802931606144,1.1433697902342645,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23755_c2_g1_i1@@W-25D-2@@KO",0.47616984375114646,0,0.33470440440618426,0.15873293126535817,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN48727_c0_g1_i1@@W-35D-3@@KO",0.09084162637600489,0,0.766241529583969,0,"","","","","","","","","","","","","","","","","",""]
["Contig11810@@WT",1.399991873156444,0.2797772583126244,1.0080695300555054,1.41145972923428,"","","","","","","","","","","","","","","","","",""]
["Contig17934@@KO",0,0,1.0740891970112816,0,"","","","","","","","","","","","","","","","","",""]
["Contig708@@KO",2.132644356129296,7.261869546538225,2.861834974587106,2.197403531700305,"","","","","","","","","","","","","","","","","",""]
["Contig21287@@KO",0.27269638628920284,0.03191920712026615,4.715351036524129,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9752_c0_g1_i1@@W-35D-3@@KO",0.11509018799828508,0,1.5370621918148544,0,"","","","","","","","","","","","","","","","","",""]
["Contig14077@@KO",0,0,1.9212902175004345,0.21439253054022403,2e-21,"AT5G04540","Myotubularin-like phosphatases II superfamily \\\\ Myotubularin-like phosphatases II superfamily; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: Myotubularin-like phosphatases II superfamily (TAIR:AT3G10550.1); Has 1724 Blast hits to 1576 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).","","","","","","","","","",5e-22,"YMR1","Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family",4e-20,"PHYPADRAFT_71628","hypothetical protein"]
["Contig23819@@KO",0.18334889611292382,0.14307368156305478,8.076337024796898,0.08149335258193283,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20555_c0_g1_i1@@W-35D-3@@KO",0,0,2.26414200644325,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN12326_c0_g1_i1@@W-35D-3@@KO",0,0.09772566495973586,0.8216058019527529,0,"","","","","","","","","","","","","","","","","",""]
["Contig17140@@WT",1.240768557615873,2.234344498418631,1.341766555108492,1.0181284049443238,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44998_c0_g1_i1@@W-35D-3@@KO",0,0,0.3636788155338838,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32249_c1_g2_i5@@W-25D-2@@KO",8.023920326697636,7.1309832552932875,5.784709199866313,4.8923742075361405,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN13764_c0_g1_i1@@W-35D-3@@KO",0,0,1.1228792922013924,0,6e-12,"PEX6","peroxin 6 \\\\ Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. \\\\ peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink).","","","","","","","","","","","","",7e-11,"PHYPADRAFT_128012","hypothetical protein"]
["TRINITY_DN41316_c0_g1_i1@@W-35D-3@@KO",0,0,0.54268331048486,0,"","","","","","","","","","","","","","","","","",""]
["Contig1933@@KO",3.6515271725860385,1.4247084301714303,3.080032665265898,1.785299597714871,"","","","","","","","","","","","","","","","","",""]
["Contig6306@@WT",1.2879838236495977,1.9383294311122132,2.0693401818063877,0.981380670583276,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30636_c0_g1_i1@@W-25D-4@@WT",0,0.297475777795325,0.5359196621870281,0.1694392580075964,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN30886_c1_g1_i1@@W-35D-3@@KO",0,0,1.6886421388624122,0,1e-12,"SPK1","guanyl-nucleotide exchange factors;GTPase binding;GTP binding \\\\ mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein \\\\ SPIKE1 (SPK1); FUNCTIONS IN: GTPase binding, GTP binding, guanyl-nucleotide exchange factor activity; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dedicator of cytokinesis (InterPro:IPR010703); Has 1667 Blast hits to 1104 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 1334; Fungi - 77; Plants - 63; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).","","","","","","","","","","","","",2e-15,"PHYPADRAFT_198239","hypothetical protein"]
["TRINITY_DN4741_c0_g1_i1@@W-25D-4@@WT",0,0.5175471440214583,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig11810@@KO",1.5644836332436463,0.6104111829924859,5.198537992286862,0.8850142425910998,"","","","","","","","","","","","","","","","","",""]
["Contig5100@@KO",83.10490346335992,1.413009944527794,54.425619026549306,1.6096729510721657,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43876_c0_g1_i1@@W-35D-3@@KO",0,0.21400683592448486,1.1137983415260646,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26359_c0_g1_i1@@W-25D-4@@WT",0.23808492187557323,1.5327357726789343,0.5020566066092764,0.15873293126535817,"","","","","","","","","","","","","","","","","",""]
["Contig19861@@KO",1.6475838700134726,0.48212566648386807,6.022133998669444,0.8787648209975722,"","","","","","","","","","","","","","","","","",""]
["Contig2523@@WT",0.4942751610040418,0.3857005331870944,1.3897232304621796,1.2083016288716617,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36255_c0_g2_i1@@W-35D-3@@KO",0,0,0.36586307268423746,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36819_c0_g1_i1@@W-25D-2@@KO",0.33077447161339185,0,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig21939@@KO",0.39753629157205805,0.11632940393142871,0.5588642348800508,0.26504030725041455,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44449_c0_g1_i1@@W-25D-2@@KO",0.19651453869094934,0,0.6906598821079992,0.3930529726570774,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN19587_c0_g1_i1@@W-25D-2@@KO",2.24583764720434,1.8555958578330334,0.37144025367027766,0.5284645150663754,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN51712_c0_g1_i1@@W-35D-3@@KO",0.5416431972669291,0.3169976257131432,0.3807262600120346,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17803_c0_g1_i1@@W-35D-3@@KO",0.09358845741113246,0,1.3156846998256055,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26725_c0_g1_i1@@W-35D-3@@KO",0,0,3.3196840110041164,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN8004_c0_g1_i1@@W-35D-3@@KO",0.24481048464041993,0.42982728910256707,0.6883186621686501,0,"","","","","","","","","","","","","","","","","",""]
["Contig16395@@WT",0.6467381459903631,0.7570092554343718,0.9091970388347095,1.7247399098683693,"","","","","","","","","","","","","","","","","",""]
["Contig17673@@KO",3.4766921468405627,0.5955336999698972,2.145776181672524,2.8267508307529536,"","","","","","","","","","","","","","","","","",""]
["Contig5680@@KO",3.743538296445298,1.9718210843495734,2.039311284729689,1.7470907510329703,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45873_c0_g1_i1@@W-35D-3@@KO",0.6467381459903632,0,1.0607298786404944,0,"","","","","","","","","","","","","","","","","",""]
["Contig18003@@KO",0,0,3.6951843969053852,0,"","","","","","","","","","","","","","","","","",""]
["Contig21750@@KO",37.79778502139782,40.125586908451545,10.15270026698759,16.44569369685635,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38956_c0_g1_i1@@W-25D-2@@KO",0.6878008854183227,0,0,0,"","","","","","","","","","","","","","","","","",""]
["Contig269@@KO",5.33310225001284,0.09180021740109125,95.48132232989596,0.36601946503541416,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN6323_c0_g1_i1@@W-35D-3@@KO",0,0,0.8402234703713867,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29943_c0_g2_i1@@W-25D-2@@KO",1.805477324223097,0.6502515399243963,0.9762211795180374,0.9259420990479226,"","","","","","","","","","","","","","","","","",""]
["Contig24883@@KO",0.11970015409213904,0,2.6924288000851067,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47074_c0_g1_i1@@W-35D-3@@KO",0,0,0.9395815157109337,0,"","","","","","","","","","","","","","","",5e-12,"PHYPADRAFT_136590","hypothetical protein"]
["TRINITY_DN41739_c0_g1_i1@@W-35D-3@@KO",0,0,0.9618347621356663,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN43995_c0_g1_i1@@W-35D-3@@KO",0,0,1.038344345487367,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39251_c1_g1_i1@@W-35D-3@@KO",0,0,1.4097537520543062,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53527_c0_g1_i1@@W-35D-3@@KO",0,0,0.8971458262433805,0,"","","","","","","","","","","","","","","","","",""]
["Contig13949@@KO",0.26314649259931777,0.03422376525917876,4.192613065719572,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN18101_c0_g2_i1@@W-35D-3@@KO",1.2415889908697515,0.29065684879142073,0.5236349707901908,0.3311105271094004,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN44569_c0_g1_i1@@W-35D-3@@KO",0,0,0.8531680896628226,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN52184_c0_g1_i1@@W-35D-3@@KO",0,0,1.532483059167938,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20225_c0_g1_i1@@W-25D-4@@WT",0.6841808807582263,1.3347268451079715,0.32061158737855544,0.15204943942260626,"","","","","","","","","","","","","","","","","",""]
["Contig317@@KO",7.39417502324028,6.421383097014864,8.299133887968754,13.066487147445438,"","","","","","","","","","","","","","","","","",""]
["Contig14125@@KO",0,0.073720378072824,3.276016655917507,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36141_c0_g1_i1@@W-25D-4@@WT",0,0.5829841392425622,0.17504655632737223,0.332061994141324,"","","","","","","","","","","","","","","","","",""]
["Contig10792@@KO",0.11945266928009464,0,3.7783998236893854,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15445_c0_g1_i1@@W-35D-3@@KO",0,0,1.2724010778470085,0,"","","","","","","","","","","","","","","","","",""]
["Contig10745@@KO",0.17160972586674983,0.10043489131505529,2.412522835719823,0,"","","","","","","","","","","","","","","","","",""]
["Contig7559@@WT",0.6264788787665686,2.0776711853969867,0.7339301397822354,0.13922599272431416,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN20554_c0_g1_i1@@W-25D-2@@KO",0.6813121978200366,0.47848698220851804,1.7240434415639303,0.36338859736220364,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN37644_c0_g1_i1@@W-35D-3@@KO",0.18793072519794318,0,4.189404199388931,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN5934_c0_g1_i1@@W-35D-3@@KO",0,0,2.7599573541325486,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN41569_c0_g1_i1@@W-35D-3@@KO",0,0,2.2170541310926106,0,"","","","","","","","","","","","","","","","","",""]
["Contig104@@WT",3.213343911875714,2.9633935347565745,3.1484778356051404,2.2072795026292953,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31809_c0_g1_i1@@W-25D-4@@WT",0,0.41235463507400744,0.6603382287471603,0,"","","","","","","","","","","","","","","","","",""]
["Contig6981@@KO",1.8517716145877916,1.1560027376433712,1.5619538872288599,1.1522835010374148,"","","","","","","","","","","","","","","","","",""]
["Contig16999@@WT",5.224359916900877,6.115131503118791,8.813407891342418,10.736200133982042,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN21421_c0_g1_i2@@W-35D-3@@KO",0,0,0.5670391106562217,0,"","","","","","","","","","","","","","","","","",""]
["Contig15378@@WT",10.994437606103961,2.4085950234195965,5.576761813034157,3.803712360800052,"","","","","","","","","","","","","","","","","",""]
["Contig20081@@KO",1.2292611569178533,0.47961815710735617,0.8640595971904331,0.8195572621360336,"","","","","","","","","","","","","","","","","",""]
["Contig13002@@KO",1.1988940334762066,0.20047280677511034,10.232958767121879,0.22837465209719515,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45128_c0_g1_i1@@W-35D-3@@KO",0.12973489754896506,0,1.0943030227890815,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN31030_c0_g1_i1@@W-35D-3@@KO",0.8355928112106895,0.13972347138871327,3.1884513235167637,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27824_c1_g1_i1@@W-35D-3@@KO",1.6992727757393853,1.2786458852294853,2.7301378869210327,0.9710720500939558,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28785_c0_g1_i1@@W-25D-4@@WT",0,0.5776722108667758,0.1387612792754568,0.1316145489307298,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39464_c0_g1_i1@@W-25D-2@@KO",0.28228961421077736,0.16521048897101928,0.19842410945252617,0.18820451785208592,"","","","","","","","","","","","","","","","","",""]
["Contig9060@@KO",3.0700424136587077,0.7186990704427538,4.315925214711323,1.0526499652334278,"","","","","","","","","","","","","","","","","",""]
["Contig2500@@KO",20.254724603679282,4.049045303226703,115.30566731793047,5.098128262993268,"","","","","","","","","","","","","","","","","",""]
["Contig19280@@KO",0,0,2.0907276680848077,0,"","","","","","","","","","","","","","","","","",""]
["Contig20638@@KO",0,0,7.844004041891782,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN23060_c0_g1_i1@@W-35D-3@@KO",0.05627461789786276,0,2.6106943543682375,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN29335_c1_g1_i1@@W-35D-3@@KO",0.07994733538995263,0,2.4726133491556492,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN17013_c0_g1_i1@@W-35D-3@@KO",0,0,1.2824463495142218,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1016_c0_g1_i1@@W-35D-3@@KO",0.41798831943428616,0.32617119044439175,1.7628482778692278,0.7431355238661141,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42614_c0_g1_i1@@W-35D-3@@KO",0,0,1.025322205180925,0,9e-12,"SIK1","Protein kinase superfamily protein \\\\ Encodes a putative serine/threonine kinase (SIK1). \\\\ SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 137554 Blast hits to 133946 proteins in 4802 species: Archae - 182; Bacteria - 16401; Metazoa - 51341; Fungi - 13391; Plants - 33553; Viruses - 570; Other Eukaryotes - 22116 (source: NCBI BLink).","","","","","","","","","",2e-11,"RAD53","Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p; also interacts with ARS1 and plays a role in initiation of DNA replication","","",""]
["TRINITY_DN22476_c0_g1_i1@@W-35D-5@@WT",1.8289250816805398,8.3983786552573,0.5933396259927812,0.93796732111348,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27177_c0_g1_i1@@W-25D-4@@WT",0.13583528458104804,0.7949783716944031,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36470_c0_g1_i1@@W-25D-2@@KO",0.2519270684962461,0,0.35416396280189266,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN3766_c0_g1_i1@@W-25D-2@@KO",0.1393294398114287,0,0.19587203087435864,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40395_c0_g1_i1@@W-25D-2@@KO",0.2642161937887459,0,0,0.3523096767109169,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN9802_c0_g1_i1@@W-25D-2@@KO",0.5777527437513911,0,0,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN33035_c0_g1_i1@@W-25D-2@@KO",0.27599653363919957,0,0.38800128408869766,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN1326_c0_g1_i1@@W-35D-3@@KO",0.11953505043132229,0,0.9242458174085254,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22242_c0_g1_i1@@W-35D-3@@KO",1.6574873796146463,0.9700473792314764,3.32875418589757,1.5786553819833435,1E-10,"GATA3","GATA transcription factor 3 \\\\ Encodes a member of the GATA factor family of zinc finger transcription factors. \\\\ GATA transcription factor 3 (GATA3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 7 (TAIR:AT4G36240.1); Has 1460 Blast hits to 1422 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 551; Plants - 835; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["TRINITY_DN31514_c0_g4_i1@@W-25D-2@@KO",0.49901868462212284,0.2920515553595177,0.35076507640264226,0.776298481505053,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN42438_c0_g1_i1@@W-35D-3@@KO",0,0,2.784740644659453,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32647_c0_g1_i1@@W-35D-3@@KO",0.13360161083665262,0,3.255542120555116,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN55968_c0_g1_i1@@W-35D-3@@KO",0,0,1.549727242319045,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN22551_c0_g1_i1@@W-25D-2@@KO",1.9286998122264536,0.9030199426843248,0.18076024214221229,1.0287024388235675,"","","","","","","","","","","","","","","","","",""]
["Contig11027@@WT",1.523371492313238,1.7831116446364306,0.47590782501504325,0.3385475799643967,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40262_c0_g1_i1@@W-35D-3@@KO",3.6362060795542095,0.1773413290702899,78.48818283325022,0.6060711921040948,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN54831_c0_g1_i1@@W-35D-3@@KO",0,0.29923079713335055,0.5390814301055357,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN27367_c0_g1_i1@@W-35D-3@@KO",0.04735678227470418,0,0.5326006697436112,0,"","","","","","","","","","","","","","","","","",""]
["Contig18240@@KO",0.8763665214206493,0.9118133953097154,0.821342044070906,0.1298399707428997,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN45387_c0_g1_i1@@W-35D-3@@KO",0,0,0.6603382287471603,0.1565820785381853,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN50408_c0_g1_i1@@W-35D-3@@KO",0.13051643307636845,0,0.7339301397822354,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40617_c0_g1_i1@@W-35D-3@@KO",0,0,1.845945503088653,0,2E-12,"AT2G28960","Leucine-rich repeat protein kinase family protein \\\\ Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","","","","","","","","","","","","","","",""]
["Contig16443@@WT",2.379947381930446,0.9605988657974037,3.230404630405142,2.407449457524599,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN15889_c0_g1_i1@@W-35D-3@@KO",1.782623180878501,0.3210102538867273,2.3132734785541342,0.5485327877904149,"","","","","","","","","","","","","","","","","",""]
["Contig17721@@KO",0.18360786348031494,0,13.090345985885936,0.06995010530337818,"","","","","","","","","","","","","","","","","",""]
["Contig19078@@KO",3.704279520076016,0.10083423481929009,13.200528776560406,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40926_c0_g1_i1@@W-25D-2@@KO",0.3621013017940473,0.14128027886936745,0.5090490384562022,0.16094369632476427,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN48128_c0_g1_i1@@W-35D-3@@KO",0.10699124884285019,1.127102669202287,1.3536933689316786,0,"","","","","","","","","","","","","","","","","",""]
["Contig7844@@KO",8.824015097629461,5.750552108362382,6.53208654659113,4.888318426296873,"","","","","","","","","","","","","","","",1E-10,"PHYPADRAFT_135179","hypothetical protein"]
["TRINITY_DN9271_c0_g1_i1@@W-25D-2@@KO",0.8879396676507034,0.20786729554960212,0.24965656394231778,0.23679830729750154,"","","","","","","","","","","","","","","","","",""]
["Contig6566@@WT",5.5858130975964055,7.0316638031713214,3.132591326297769,2.569730623181226,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN26950_c0_g1_i1@@W-35D-5@@WT",0,0,0,0.3330189451330857,"","","","","","","","","","","","","","","","","",""]
["Contig24516@@KO",0.07535905353279014,0,2.118824403545236,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28477_c3_g2_i1@@W-25D-2@@KO",1.31614234849908,0.4740151412532983,0.5693102953450985,0.26999433168500175,"","","","","","","","","","","","","","","","","",""]
["Contig2475@@WT",0.11493754849165605,0.8072088081820092,0,0.1532593819113803,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN40312_c0_g1_i1@@W-25D-2@@KO",0.8449030375194437,0.9889619520855721,1.6968301281873408,0.9656621779485857,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN16933_c0_g1_i1@@W-25D-2@@KO",1.6081777403389235,1.4640715084483316,0.3768012470222198,0.4765260781904361,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN47998_c0_g1_i1@@W-35D-3@@KO",0,0,1.7509952048964983,0,1e-19,"AT4G32060","calcium-binding EF hand family protein \\\\ calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).","","","","","","","","","","","","",1e-20,"PHYPADRAFT_126191","hypothetical protein"]
["Contig21074@@KO",7.274623963293061,0.37021620521243004,79.44302690664742,0.8434859413224872,"","","","","","","","","","","","","","","","","",""]
["Contig13558@@KO",5.552219960842058,0.14128027886936745,2.714928205099745,1.2875495705981141,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN39022_c1_g3_i1@@W-35D-3@@KO",0.7950725831441162,0,0.745152313173401,0,"","","","","","","","","","","","","","","","","",""]
["Contig22613@@KO",0.19904205687346957,0.02329794217459941,2.182574058314282,0,"","","","","","","","","","","","","","","","","",""]
["Contig13215@@KO",0.049128634672737335,0,0.897857846740399,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN53357_c0_g1_i1@@W-35D-3@@KO",0,0.1487378888976625,3.036878085726493,0.5083177740227892,"","","","","","","","","","","","","","","","","",""]
["Contig24859@@KO",0.07000235182771297,0,2.165034628824494,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN34510_c0_g1_i1@@W-35D-3@@KO",0.6972877941827132,0,0.8402234703713867,0.2656495953130592,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36294_c0_g1_i1@@W-25D-2@@KO",2.588986351716139,0.9569739644170361,1.1493622943759536,0.18169429868110182,"","","","","","","","","","","","","","","","","",""]
["Contig5656@@KO",1.5086386925810016,0.6867259976764417,2.827831408986872,1.564609318623337,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49861_c0_g1_i1@@W-35D-3@@KO",0,0,0.35416396280189266,0,2E-12,"UVR8","Regulator of chromosome condensation (RCC1) family protein \\\\ UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus. \\\\ UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","","","","","","","","","","","","",8e-11,"PHYPADRAFT_195710","hypothetical protein"]
["Contig10532@@KO",8.506174922436761,9.136559743418077,2.6729972989297583,4.67034074900846,"","","","","","","","","","","","","","","","","",""]
["Contig16999@@KO",4.977615839454246,2.6371749273354603,1.2522072880686024,1.0479828351981324,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN28372_c0_g1_i2@@W-25D-2@@KO",0.5739265666404547,0.11196384131148547,0.5378914048735147,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN49602_c0_g1_i1@@W-35D-3@@KO",0,0,1.7916529882919274,0,"","","","","","","","","","","","","","",null,"","",""]
["Contig9404@@KO",2.1186204738167205,1.5817990176430485,1.8507739319699708,1.6275714642419823,"","","","","","","","","","","","","","","","","",""]
["Contig12980@@WT",13.44014200167086,9.131454031913664,8.850743125990444,6.533419374305544,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN37643_c0_g1_i1@@W-25D-2@@KO",1.0725607866671862,0.6277180707190955,0.15078267723248895,1.001117596198348,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN36206_c0_g1_i1@@W-35D-3@@KO",0,0.06428342219784906,6.794202460037322,0.07323040174979768,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN38087_c1_g1_i1@@W-35D-3@@KO",0,0,0.7295353485260543,0,"","","","","","","","","","","","","","","","","",""]
["TRINITY_DN32274_c1_g1_i2@@W-25D-2@@KO",0.911601454025687,0.42681307248894457,0.3417458715395542,0.08103616687319828,"","","","","","","","","","","","","","","","","",""]
["Contig12909@@KO",1.753295898667516,0.1465884974396038,1.9366422474600604,0.3339814276334704,"","","","","","","","","","","","","","","","","",""]
["Contig23262@@KO",0,0,1.4367028679699418,0,"","","","","","","","","","","","","","","","","",""]